Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN1_chr12_40687439_41077415	40773696	C C	CATATATA others(1): Show CATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG03041.hp2 NA19043.hp2 HG02109.hp1 HG03041.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0003t0003 a0001c0004t0003 a0001c0001t0001 a0001c0003t0003 a0001c0004t0003	a0001c0001t0001g0063 a0001c0003t0003g0066 a0001c0004t0003g0168 a0001c0001t0001g0063 a0001c0003t0003g0066 a0001c0004t0003g0168	3	230	0.0130	8	c.-77 others(27): Show c.-77+81116_-77+81123dupTATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40809812	T T	TCACACAC others(1): Show TCACACACA	intron_variant intron_variant	MODIFIER	HG02004.hp1 NA18970.hp1 HG02004.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0218 a0001c0001t0002g0141 a0001c0001t0001g0218 a0001c0001t0002g0141	2	230	0.0087	8	c.-76 others(27): Show c.-76-98544_-76-98543insACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40809814	T T	TCACACAC others(1): Show TCACACACA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01069.hp2 HG01255.hp1 others(18): Show HG00099.hp1 HG01069.hp2 HG01255.hp1 HG02273.hp1 HG02559.hp1 HG02717.hp2 HG03041.hp2 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03704.hp2 NA18747.hp1 NA18957.hp2 NA18959.hp1 NA18984.hp2 NA19006.hp2 NA19010.hp1 NA19030.hp2 NA19043.hp1 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0001c0006 a0001c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 a0001c0003t0003 a0001c0004t0001 a0001c0004t0007 a0001c0006t0006 a0001c0012t0021	a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0230 others(18): Show a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0230 a0001c0001t0002g0091 a0001c0001t0002g0131 a0001c0001t0002g0175 a0001c0001t0002g0180 a0001c0001t0013g0211 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0004t0001g0217 a0001c0004t0007g0213 a0001c0004t0007g0214 a0001c0006t0006g0015 a0001c0006t0006g0017 a0001c0006t0006g0018 a0001c0006t0006g0021 a0001c0006t0006g0051 a0001c0006t0006g0119 a0001c0012t0021g0204	21	230	0.0913	8	c.-76 others(27): Show c.-76-98514_-76-98507dupCACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40813058	T T	TCTTCCTT others(1): Show TCTTCCTTC	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01167.hp2 HG01169.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0002t0001g0195 a0001c0002t0001g0196	2	230	0.0087	8	c.-76 others(27): Show c.-76-95275_-76-95268dupCCTTCCTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40830832	T T	TATATATA others(1): Show TATATATAC	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01258.hp2 HG02486.hp2 others(1): Show HG01256.hp1 HG01258.hp2 HG02486.hp2 NA19065.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0047 a0001c0002t0001g0121 a0001c0002t0001g0124 others(1): Show a0001c0002t0001g0047 a0001c0002t0001g0121 a0001c0002t0001g0124 a0001c0002t0001g0149	4	230	0.0174	8	c.-76 others(27): Show c.-76-77522_-76-77521insTATACATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40862206	A A	AACACACA others(1): Show AACACACAC	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00438.hp1 HG03834.hp2 HG00323.hp1 HG00438.hp1 HG03834.hp2	a0001 a0003 a0001 a0003	a0001c0003 a0003c0008 a0001c0003 a0003c0008	a0001c0003t0005 a0001c0003t0011 a0003c0008t0002 a0001c0003t0005 a0001c0003t0011 a0003c0008t0002	a0001c0003t0005g0104 a0001c0003t0011g0227 a0003c0008t0002g0143 a0001c0003t0005g0104 a0001c0003t0011g0227 a0003c0008t0002g0143	3	230	0.0130	8	c.-76 others(27): Show c.-76-46150_-76-46149insCACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40862208	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01167.hp2 HG01169.hp2 others(27): Show HG00673.hp1 HG01167.hp2 HG01169.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp2 HG01517.hp1 HG02071.hp1 HG02083.hp2 HG02109.hp2 HG02257.hp2 HG02273.hp2 HG02559.hp1 HG02818.hp2 HG03041.hp1 HG03098.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp2 HG03927.hp1 HG03927.hp2 NA18952.hp1 NA18952.hp2 NA18961.hp2 NA18972.hp1 NA18989.hp2 NA19043.hp2 NA19065.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 a0001c0002t0004 a0001c0004t0001 a0001c0004t0003 a0001c0004t0007	a0001c0001t0001g0038 a0001c0001t0001g0114 a0001c0001t0001g0201 others(27): Show a0001c0001t0001g0038 a0001c0001t0001g0114 a0001c0001t0001g0201 a0001c0001t0001g0208 a0001c0001t0001g0228 a0001c0001t0002g0045 a0001c0001t0002g0158 a0001c0001t0002g0176 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0029 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0216 a0001c0001t0006g0138 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0007g0002 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0002t0004g0117 a0001c0004t0001g0217 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0057 a0001c0004t0007g0214	30	230	0.1304	8	c.-76 others(27): Show c.-76-46128_-76-46121dupACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40925800	T T	TTATATAT others(1): Show TTATATATA	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG03516.hp1 HG03654.hp2 others(1): Show HG00741.hp1 HG03516.hp1 HG03654.hp2 NA18977.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0001 a0001c0002t0005 a0001c0005t0002 others(1): Show a0001c0002t0001 a0001c0002t0005 a0001c0005t0002 a0001c0005t0025	a0001c0002t0001g0024 a0001c0002t0005g0098 a0001c0005t0002g0210 others(1): Show a0001c0002t0001g0024 a0001c0002t0005g0098 a0001c0005t0002g0210 a0001c0005t0025g0052	4	230	0.0174	8	c.496 others(25): Show c.496+1170_496+1177dupATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40926171	G G	GGATAGAT others(1): Show GGATAGATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG00323.hp1 others(68): Show HG00099.hp2 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00621.hp1 HG00642.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01258.hp2 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02015.hp2 HG02055.hp1 HG02148.hp2 HG02273.hp1 HG02280.hp2 HG02486.hp2 HG02572.hp2 HG02717.hp1 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03225.hp2 HG03239.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp2 HG03540.hp2 HG03704.hp1 HG03834.hp1 HG04115.hp2 NA18747.hp1 NA18943.hp2 NA18950.hp1 NA18950.hp2 NA18953.hp2 NA18964.hp1 NA18970.hp1 NA18974.hp2 NA18980.hp2 NA18984.hp2 NA19011.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19062.hp1 NA19065.hp1 NA19083.hp1 NA19091.hp1 NA19091.hp2 NA21309.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0009 a0002c0007 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0013 a0001c0001t0017 a0001c0001t0018 a0001c0001t0024 a0001c0002t0001 a0001c0002t0002 a0001c0002t0027 a0001c0003t0003 a0001c0003t0011 a0001c0003t0016 a0001c0003t0019 a0001c0004t0003 a0001c0005t0002 a0001c0006t0006 a0001c0009t0004 a0002c0007t0008 a0004c0011t0001	a0001c0001t0001g0049 a0001c0001t0001g0077 a0001c0001t0001g0105 others(68): Show a0001c0001t0001g0049 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0188 a0001c0001t0001g0208 a0001c0001t0001g0218 a0001c0001t0002g0005 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0067 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0153 a0001c0001t0002g0175 a0001c0001t0002g0209 a0001c0001t0003g0120 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0004g0054 a0001c0001t0004g0086 a0001c0001t0004g0170 a0001c0001t0013g0211 a0001c0001t0017g0187 a0001c0001t0018g0048 a0001c0001t0024g0167 a0001c0002t0001g0025 a0001c0002t0001g0036 a0001c0002t0001g0039 a0001c0002t0001g0044 a0001c0002t0001g0047 a0001c0002t0001g0068 a0001c0002t0001g0088 a0001c0002t0001g0102 a0001c0002t0001g0103 a0001c0002t0001g0121 a0001c0002t0001g0124 a0001c0002t0001g0129 a0001c0002t0001g0132 a0001c0002t0001g0136 a0001c0002t0001g0147 a0001c0002t0001g0149 a0001c0002t0001g0156 a0001c0002t0001g0169 a0001c0002t0001g0189 a0001c0002t0001g0197 a0001c0002t0001g0215 a0001c0002t0002g0221 a0001c0002t0027g0041 a0001c0003t0003g0061 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0019g0056 a0001c0004t0003g0168 a0001c0005t0002g0173 a0001c0005t0002g0207 a0001c0006t0006g0021 a0001c0006t0006g0051 a0001c0006t0006g0119 a0001c0009t0004g0046 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192 a0004c0011t0001g0097	71	230	0.3087	8	c.496 others(25): Show c.496+1564_496+1571dupGATAGATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40947782	T T	TATATATA others(1): Show TATATATAC	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG02145.hp2 HG01123.hp2 HG02145.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0062 a0001c0005t0002g0081	2	230	0.0087	8	c.168 others(27): Show c.1683+3613_1683+3614insTATATACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40957592	A A	AAAATAAA others(1): Show AAAATAAAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00408.hp2 others(75): Show HG00140.hp2 HG00280.hp2 HG00408.hp2 HG00621.hp1 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG00741.hp1 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01258.hp1 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02257.hp2 HG02273.hp1 HG02615.hp2 HG02818.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03195.hp1 HG03239.hp1 HG03516.hp1 HG03579.hp1 HG03704.hp1 HG03704.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp2 NA18944.hp2 NA18950.hp1 NA18952.hp1 NA18953.hp2 NA18957.hp2 NA18959.hp1 NA18961.hp2 NA18964.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp2 NA18980.hp1 NA18983.hp2 NA18984.hp2 NA18989.hp2 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA19079.hp1 NA19083.hp2 NA19090.hp1 NA20129.hp2 NA21309.hp1	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0004c0011 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0018 a0001c0001t0024 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0003t0003 a0001c0004t0003 a0001c0004t0007 a0001c0005t0002 a0001c0005t0025 a0001c0006t0006 a0004c0011t0001 a0005c0010t0002	a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 others(75): Show a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0160 a0001c0001t0001g0177 a0001c0001t0001g0188 a0001c0001t0001g0201 a0001c0001t0001g0206 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0002g0005 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0069 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0002g0220 a0001c0001t0004g0029 a0001c0001t0004g0073 a0001c0001t0004g0086 a0001c0001t0004g0093 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0216 a0001c0001t0005g0020 a0001c0001t0005g0135 a0001c0001t0007g0002 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0012g0012 a0001c0001t0018g0048 a0001c0001t0024g0167 a0001c0002t0001g0022 a0001c0002t0001g0090 a0001c0002t0003g0060 a0001c0002t0004g0117 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0057 a0001c0005t0002g0053 a0001c0005t0002g0081 a0001c0005t0002g0210 a0001c0005t0025g0052 a0001c0006t0006g0017 a0001c0006t0006g0018 a0001c0006t0006g0051 a0001c0006t0006g0119 a0004c0011t0001g0097 a0005c0010t0002g0026	78	230	0.3391	8	c.168 others(27): Show c.1684-1495_1684-1488dupATAAATAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40964525	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02083.hp2 HG03225.hp2 others(1): Show HG00438.hp1 HG02083.hp2 HG03225.hp2 NA18988.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0001c0005 others(1): Show a0001c0001 a0001c0003 a0001c0005 a0003c0008	a0001c0001t0006 a0001c0003t0002 a0001c0005t0002 others(1): Show a0001c0001t0006 a0001c0003t0002 a0001c0005t0002 a0003c0008t0002	a0001c0001t0006g0138 a0001c0003t0002g0108 a0001c0005t0002g0207 others(1): Show a0001c0001t0006g0138 a0001c0003t0002g0108 a0001c0005t0002g0207 a0003c0008t0002g0143	4	230	0.0174	8	c.180 others(27): Show c.1804+5319_1804+5326dupTGTGTGTG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40965998	C C	CCACACAC others(1): Show CCACACACA	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG02004.hp2 HG02148.hp2 others(4): Show HG01069.hp1 HG02004.hp2 HG02148.hp2 HG02257.hp1 HG02572.hp2 HG03579.hp1 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 a0001c0003t0016 a0001c0003t0020	a0001c0001t0001g0105 a0001c0001t0004g0225 a0001c0002t0001g0142 others(4): Show a0001c0001t0001g0105 a0001c0001t0004g0225 a0001c0002t0001g0142 a0001c0002t0001g0147 a0001c0002t0003g0060 a0001c0003t0016g0226 a0001c0003t0020g0165	7	230	0.0304	8	c.180 others(27): Show c.1804+6798_1804+6805dupACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	T T	TTATATAT others(1): Show TTATATATA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02486.hp2 HG02976.hp2 others(2): Show HG00140.hp1 HG02486.hp2 HG02976.hp2 HG03225.hp1 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0031 a0001c0002t0001g0121 a0001c0002t0001g0169 others(2): Show a0001c0002t0001g0031 a0001c0002t0001g0121 a0001c0002t0001g0169 a0001c0002t0001g0174 a0001c0002t0001g0215	5	230	0.0217	8	c.180 others(27): Show c.1805-5693_1805-5686dupATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41037663	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG02015.hp1 NA18906.hp2 NA19083.hp1 HG02015.hp1 NA18906.hp2 NA19083.hp1	a0001 a0005 a0001 a0005	a0001c0002 a0001c0005 a0005c0010 a0001c0002 a0001c0005 a0005c0010	a0001c0002t0002 a0001c0005t0002 a0005c0010t0002 a0001c0002t0002 a0001c0005t0002 a0005c0010t0002	a0001c0002t0002g0221 a0001c0005t0002g0053 a0005c0010t0002g0026 a0001c0002t0002g0221 a0001c0005t0002g0053 a0005c0010t0002g0026	3	230	0.0130	8	c.298 others(27): Show c.2980+8476_2980+8483dupCACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	A A	AATATATA others(1): Show AATATATAT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01074.hp2 HG02615.hp1 others(10): Show HG01069.hp2 HG01074.hp2 HG02615.hp1 HG03041.hp1 HG03098.hp2 HG03516.hp1 HG03579.hp1 HG03834.hp2 NA18747.hp2 NA18959.hp2 NA18977.hp1 NA18977.hp2 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 a0001c0002t0005 a0001c0003t0005 a0001c0003t0020 a0001c0004t0003 a0001c0004t0007 a0001c0005t0025 a0001c0006t0006	a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0080 others(10): Show a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0002g0146 a0001c0002t0003g0060 a0001c0002t0003g0075 a0001c0002t0005g0098 a0001c0003t0005g0104 a0001c0003t0020g0165 a0001c0004t0003g0171 a0001c0004t0007g0057 a0001c0005t0025g0052 a0001c0006t0006g0017	13	230	0.0565	8	c.298 others(29): Show c.2981-16498_2981-16491dupATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41064769	C C	CTAGATAG others(1): Show CTAGATAGA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00280.hp2 others(67): Show HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG00733.hp2 HG01070.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp2 HG01981.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02717.hp1 HG02717.hp2 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03209.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18950.hp1 NA18953.hp1 NA18957.hp1 NA18959.hp2 NA18964.hp2 NA18970.hp1 NA18972.hp1 NA18972.hp2 NA18974.hp2 NA18977.hp2 NA18984.hp2 NA18988.hp1 NA19006.hp2 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19062.hp1 NA19083.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0003c0008 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(26): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0001c0003t0019 a0001c0003t0020 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0007 a0001c0005t0002 a0003c0008t0002 a0005c0010t0002	a0001c0001t0001g0007 a0001c0001t0001g0063 a0001c0001t0001g0095 others(67): Show a0001c0001t0001g0007 a0001c0001t0001g0063 a0001c0001t0001g0095 a0001c0001t0001g0101 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0230 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0059 a0001c0001t0002g0067 a0001c0001t0002g0087 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0158 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0003g0010 a0001c0001t0003g0084 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0004g0216 a0001c0001t0005g0020 a0001c0001t0005g0135 a0001c0001t0007g0058 a0001c0001t0012g0012 a0001c0001t0013g0133 a0001c0001t0014g0074 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0017g0187 a0001c0001t0018g0048 a0001c0002t0002g0221 a0001c0002t0003g0060 a0001c0002t0005g0098 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0019g0056 a0001c0003t0020g0165 a0001c0004t0001g0217 a0001c0004t0002g0008 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0003 a0001c0004t0007g0004 a0001c0004t0007g0057 a0001c0004t0007g0213 a0001c0005t0002g0053 a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0173 a0003c0008t0002g0143 a0005c0010t0002g0026	70	230	0.3044	8	c.298 others(27): Show c.2981-5164_2981-5157dupAGATAGAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075705	T T	TGAAGGAA others(1): Show TGAAGGAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG01070.hp1 HG01099.hp2 others(23): Show HG00733.hp1 HG01070.hp1 HG01099.hp2 HG01167.hp1 HG01258.hp1 HG01517.hp2 HG02486.hp1 HG02572.hp1 HG02615.hp1 HG02818.hp2 HG03209.hp1 HG03239.hp1 HG03471.hp1 HG03486.hp1 HG03540.hp1 HG03579.hp1 HG03704.hp1 HG04115.hp1 HG04115.hp2 NA18943.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18984.hp2 NA19010.hp1 NA20129.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0012 a0001c0001t0014 a0001c0001t0024 a0001c0001t0026 a0001c0002t0001 a0001c0002t0003 a0001c0003t0002 a0001c0003t0003 a0004c0011t0001	a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0095 others(23): Show a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0095 a0001c0001t0001g0101 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0091 a0001c0001t0002g0096 a0001c0001t0002g0113 a0001c0001t0002g0131 a0001c0001t0002g0176 a0001c0001t0007g0006 a0001c0001t0007g0055 a0001c0001t0012g0012 a0001c0001t0014g0185 a0001c0001t0024g0167 a0001c0001t0026g0190 a0001c0002t0001g0022 a0001c0002t0001g0085 a0001c0002t0003g0060 a0001c0002t0003g0075 a0001c0003t0002g0128 a0001c0003t0003g0064 a0004c0011t0001g0097	26	230	0.1130	8	c.56 others(19): Show c.5670_*5671insGAAGGAAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3291		chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075740	A A	AGGAAGGA others(1): Show AGGAAGGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp1 HG00738.hp2 HG02055.hp2 others(3): Show HG00673.hp1 HG00738.hp2 HG02055.hp2 HG02818.hp1 HG02886.hp1 HG03139.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0007 a0001c0001 a0002c0007	a0001c0001t0004 a0002c0007t0008 a0001c0001t0004 a0002c0007t0008	a0001c0001t0004g0054 a0001c0001t0004g0137 a0001c0001t0004g0184 others(3): Show a0001c0001t0004g0054 a0001c0001t0004g0137 a0001c0001t0004g0184 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0192	6	230	0.0261	8	c.57 others(19): Show c.5705_*5706insGGAAGGAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3326		chr12	TogoVar
CNTN2_chr1_205038212_205083289	205049281	G G	GACACACA others(1): Show GACACACAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03540.hp2 NA20129.hp1 HG01496.hp1 HG03540.hp2 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0004 a0005c0007 a0001c0004 a0005c0007	a0001c0004t0001 a0005c0007t0009 a0001c0004t0001 a0005c0007t0009	a0001c0004t0001g0084 a0005c0007t0009g0038 a0005c0007t0009g0039 a0001c0004t0001g0084 a0005c0007t0009g0038 a0005c0007t0009g0039	3	380	0.0079	8	c.-86 others(25): Show c.-86-3781_-86-3774dupCACACACA	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205050278	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp2 HG00609.hp1 others(43): Show HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00733.hp2 HG01081.hp1 HG01168.hp2 HG01175.hp1 HG01255.hp1 HG01261.hp1 HG01346.hp2 HG01943.hp2 HG01975.hp2 HG02027.hp2 HG02080.hp1 HG02647.hp1 HG02735.hp1 HG03041.hp2 NA18612.hp1 NA18747.hp1 NA18944.hp2 NA18950.hp2 NA18957.hp1 NA18959.hp1 NA18961.hp1 NA18974.hp1 NA18975.hp1 NA18979.hp2 NA18982.hp2 NA18984.hp1 NA18990.hp2 NA18994.hp2 NA18995.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19056.hp2 NA19059.hp1 NA19063.hp1 NA19064.hp2 NA19068.hp1 NA19074.hp1 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19088.hp2 NA19091.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0015	a0001c0004 a0002c0002 a0002c0006 others(2): Show a0001c0004 a0002c0002 a0002c0006 a0003c0003 a0015c0018	a0001c0004t0008 a0002c0002t0002 a0002c0002t0006 others(8): Show a0001c0004t0008 a0002c0002t0002 a0002c0002t0006 a0002c0002t0017 a0002c0006t0008 a0003c0003t0001 a0003c0003t0002 a0003c0003t0040 a0003c0003t0041 a0003c0003t0042 a0015c0018t0005	a0001c0004t0008g0234 a0002c0002t0002g0108 a0002c0002t0006g0228 others(31): Show a0001c0004t0008g0234 a0002c0002t0002g0108 a0002c0002t0006g0228 a0002c0002t0017g0101 a0002c0006t0008g0199 a0003c0003t0001g0001 a0003c0003t0001g0017 a0003c0003t0001g0020 a0003c0003t0001g0021 a0003c0003t0001g0041 a0003c0003t0001g0077 a0003c0003t0001g0127 a0003c0003t0001g0167 a0003c0003t0001g0168 a0003c0003t0001g0174 a0003c0003t0001g0175 a0003c0003t0001g0180 a0003c0003t0001g0181 a0003c0003t0001g0186 a0003c0003t0001g0188 a0003c0003t0001g0189 a0003c0003t0001g0190 a0003c0003t0001g0191 a0003c0003t0001g0192 a0003c0003t0001g0193 a0003c0003t0001g0194 a0003c0003t0001g0198 a0003c0003t0001g0200 a0003c0003t0001g0201 a0003c0003t0002g0128 a0003c0003t0040g0187 a0003c0003t0041g0001 a0003c0003t0042g0021 a0015c0018t0005g0268	46	380	0.1211	8	c.-86 others(25): Show c.-86-2790_-86-2783dupTGTGTGTG	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205080525	T T	TACACACA others(1): Show TACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00280.hp2 others(55): Show HG00099.hp1 HG00099.hp2 HG00280.hp2 HG00323.hp1 HG00544.hp1 HG00733.hp1 HG01099.hp2 HG01106.hp1 HG01123.hp1 HG01168.hp1 HG01169.hp2 HG01175.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01358.hp2 HG01515.hp1 HG01517.hp2 HG01891.hp1 HG02055.hp1 HG02109.hp2 HG02280.hp2 HG02486.hp1 HG02615.hp1 HG02818.hp2 HG02895.hp2 HG02897.hp2 HG02922.hp1 HG02970.hp2 HG03041.hp1 HG03239.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03540.hp2 HG03654.hp2 HG03834.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp2 NA18612.hp2 NA18948.hp2 NA18951.hp2 NA18966.hp2 NA18967.hp1 NA18983.hp1 NA19011.hp1 NA19030.hp1 NA19043.hp2 NA19079.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(4): Show a0001 a0003 a0004 a0005 a0007 a0013 a0014	a0001c0001 a0001c0012 a0003c0013 others(5): Show a0001c0001 a0001c0012 a0003c0013 a0004c0005 a0005c0007 a0007c0014 a0013c0024 a0014c0017	a0001c0001t0003 a0001c0001t0022 a0001c0001t0023 others(12): Show a0001c0001t0003 a0001c0001t0022 a0001c0001t0023 a0001c0001t0025 a0001c0001t0028 a0001c0012t0003 a0003c0013t0014 a0004c0005t0005 a0004c0005t0044 a0004c0005t0045 a0004c0005t0046 a0005c0007t0009 a0007c0014t0005 a0013c0024t0005 a0014c0017t0005	a0001c0001t0003g0008 a0001c0001t0003g0024 a0001c0001t0003g0025 others(47): Show a0001c0001t0003g0008 a0001c0001t0003g0024 a0001c0001t0003g0025 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0003g0132 a0001c0001t0003g0277 a0001c0001t0003g0280 a0001c0001t0003g0286 a0001c0001t0003g0287 a0001c0001t0003g0289 a0001c0001t0003g0290 a0001c0001t0003g0291 a0001c0001t0003g0294 a0001c0001t0003g0295 a0001c0001t0003g0298 a0001c0001t0003g0302 a0001c0001t0003g0305 a0001c0001t0003g0306 a0001c0001t0003g0309 a0001c0001t0022g0133 a0001c0001t0023g0288 a0001c0001t0025g0082 a0001c0001t0028g0214 a0001c0012t0003g0045 a0001c0012t0003g0206 a0001c0012t0003g0307 a0003c0013t0014g0037 a0004c0005t0005g0032 a0004c0005t0005g0149 a0004c0005t0005g0150 a0004c0005t0005g0151 a0004c0005t0005g0252 a0004c0005t0005g0255 a0004c0005t0005g0256 a0004c0005t0005g0260 a0004c0005t0005g0261 a0004c0005t0005g0319 a0004c0005t0044g0247 a0004c0005t0045g0030 a0004c0005t0046g0032 a0005c0007t0009g0038 a0005c0007t0009g0039 a0005c0007t0009g0071 a0005c0007t0009g0155 a0005c0007t0009g0265 a0007c0014t0005g0159 a0013c0024t0005g0148 a0014c0017t0005g0269	58	380	0.1526	8	c.67 others(19): Show c.6760_*6761insACACACAC	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding		2237		chr1	TogoVar
CNTN3_chr3_74257568_74619659	74358596	G G	GATTTATT others(1): Show GATTTATTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp2 HG01081.hp2 others(17): Show HG00438.hp1 HG00609.hp2 HG01081.hp2 HG01257.hp1 HG01261.hp2 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG02293.hp1 HG02622.hp2 HG02735.hp2 NA18955.hp1 NA18961.hp1 NA18977.hp1 NA18977.hp2 NA18998.hp1 NA19065.hp2 NA19077.hp2 NA19085.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0001 a0001c0002 a0001c0010 others(2): Show a0001c0001 a0001c0002 a0001c0010 a0002c0004 a0012c0012	a0001c0001t0001 a0001c0001t0011 a0001c0002t0001 others(9): Show a0001c0001t0001 a0001c0001t0011 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0018 a0001c0010t0003 a0001c0010t0005 a0002c0004t0001 a0002c0004t0004 a0002c0004t0006 a0012c0012t0003	a0001c0001t0001g0133 a0001c0001t0011g0009 a0001c0002t0001g0097 others(17): Show a0001c0001t0001g0133 a0001c0001t0011g0009 a0001c0002t0001g0097 a0001c0002t0001g0107 a0001c0002t0001g0113 a0001c0002t0001g0117 a0001c0002t0001g0124 a0001c0002t0001g0128 a0001c0002t0002g0015 a0001c0002t0002g0044 a0001c0002t0005g0147 a0001c0002t0005g0155 a0001c0002t0005g0166 a0001c0002t0018g0174 a0001c0010t0003g0025 a0001c0010t0005g0163 a0002c0004t0001g0122 a0002c0004t0004g0088 a0002c0004t0006g0151 a0012c0012t0003g0050	20	174	0.1149	8	c.136 others(27): Show c.1364+3286_1364+3293dupAAATAAAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTATATAT others(1): Show GTATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG03209.hp2 HG02109.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0008 a0001c0002t0009 a0001c0001t0008 a0001c0002t0009	a0001c0001t0008g0003 a0001c0002t0009g0085 a0001c0001t0008g0003 a0001c0002t0009g0085	2	174	0.0115	8	c.947 others(25): Show c.947-1086_947-1079dupTATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTATAT others(1): Show GTGTATATA	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG02132.hp2 HG02155.hp1 others(5): Show HG02015.hp2 HG02132.hp2 HG02155.hp1 HG03669.hp2 HG03710.hp1 NA18956.hp1 NA19000.hp2 NA20300.hp2	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0002 a0002c0004 a0009c0017 a0001c0002 a0002c0004 a0009c0017	a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 others(4): Show a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0002c0004t0001 a0002c0004t0004 a0009c0017t0001	a0001c0002t0003g0047 a0001c0002t0004g0100 a0001c0002t0004g0105 others(5): Show a0001c0002t0003g0047 a0001c0002t0004g0100 a0001c0002t0004g0105 a0001c0002t0005g0152 a0001c0002t0006g0167 a0002c0004t0001g0089 a0002c0004t0004g0130 a0009c0017t0001g0115	8	174	0.0460	8	c.947 others(25): Show c.947-1079_947-1078insTATATACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74418342	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp2 HG00408.hp1 others(66): Show HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00597.hp2 HG01071.hp2 HG01081.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01257.hp2 HG01261.hp1 HG01261.hp2 HG01884.hp1 HG01884.hp2 HG01934.hp2 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02451.hp2 HG02559.hp1 HG02622.hp2 HG02647.hp1 HG02735.hp1 HG02895.hp2 HG02897.hp2 HG03041.hp1 HG03098.hp2 HG03139.hp1 HG03209.hp1 HG03225.hp2 HG03486.hp1 HG03579.hp1 HG03579.hp2 HG03710.hp2 HG04199.hp2 NA18906.hp2 NA18945.hp2 NA18951.hp2 NA18955.hp2 NA18956.hp2 NA18959.hp2 NA18977.hp2 NA19043.hp2 NA19065.hp1 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19077.hp1 NA19085.hp2 NA19091.hp2 NA19240.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA20905.hp2	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0009 a0010 a0011 a0012	a0001c0001 a0001c0002 a0001c0006 others(12): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0009 a0001c0018 a0002c0004 a0002c0005 a0003c0003 a0003c0023 a0004c0011 a0009c0017 a0010c0013 a0011c0020 a0012c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(36): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0014 a0001c0001t0018 a0001c0001t0026 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0009 a0001c0006t0001 a0001c0006t0006 a0001c0008t0002 a0001c0008t0015 a0001c0009t0002 a0001c0009t0004 a0001c0018t0001 a0002c0004t0004 a0002c0004t0006 a0002c0004t0028 a0002c0005t0001 a0002c0005t0004 a0002c0005t0005 a0002c0005t0023 a0003c0003t0002 a0003c0003t0007 a0003c0023t0016 a0004c0011t0002 a0009c0017t0001 a0010c0013t0003 a0011c0020t0003 a0012c0012t0003	a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 others(66): Show a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0002g0046 a0001c0001t0002g0062 a0001c0001t0002g0082 a0001c0001t0003g0017 a0001c0001t0003g0024 a0001c0001t0003g0039 a0001c0001t0003g0042 a0001c0001t0003g0049 a0001c0001t0003g0061 a0001c0001t0003g0067 a0001c0001t0004g0090 a0001c0001t0004g0102 a0001c0001t0004g0138 a0001c0001t0005g0154 a0001c0001t0005g0156 a0001c0001t0005g0169 a0001c0001t0006g0144 a0001c0001t0006g0149 a0001c0001t0006g0153 a0001c0001t0008g0006 a0001c0001t0009g0084 a0001c0001t0011g0008 a0001c0001t0011g0009 a0001c0001t0014g0051 a0001c0001t0018g0173 a0001c0001t0026g0093 a0001c0002t0001g0107 a0001c0002t0003g0016 a0001c0002t0003g0028 a0001c0002t0004g0105 a0001c0002t0004g0123 a0001c0002t0005g0146 a0001c0002t0005g0152 a0001c0002t0005g0162 a0001c0002t0005g0164 a0001c0002t0009g0085 a0001c0006t0001g0142 a0001c0006t0006g0168 a0001c0008t0002g0068 a0001c0008t0015g0030 a0001c0009t0002g0031 a0001c0009t0004g0103 a0001c0018t0001g0126 a0002c0004t0004g0095 a0002c0004t0006g0145 a0002c0004t0028g0137 a0002c0005t0001g0127 a0002c0005t0004g0121 a0002c0005t0005g0148 a0002c0005t0005g0158 a0002c0005t0023g0032 a0003c0003t0002g0052 a0003c0003t0002g0078 a0003c0003t0002g0081 a0003c0003t0007g0034 a0003c0003t0007g0074 a0003c0023t0016g0096 a0004c0011t0002g0045 a0009c0017t0001g0115 a0010c0013t0003g0027 a0011c0020t0003g0026 a0012c0012t0003g0050	69	174	0.3966	8	c.454 others(25): Show c.454+6495_454+6502dupAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	5/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74442146	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03041.hp2 HG02258.hp2 HG03041.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0015 a0003c0003t0002 a0001c0001t0015 a0003c0003t0002	a0001c0001t0015g0014 a0003c0003t0002g0081 a0001c0001t0015g0014 a0003c0003t0002g0081	2	174	0.0115	8	c.359 others(27): Show c.359-17214_359-17207dupGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74505502	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03471.hp1 HG03041.hp1 HG03471.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0003 a0001c0002 a0003c0003	a0001c0002t0025 a0003c0003t0002 a0001c0002t0025 a0003c0003t0002	a0001c0002t0025g0087 a0003c0003t0002g0052 a0001c0002t0025g0087 a0003c0003t0002g0052	2	174	0.0115	8	c.56- others(23): Show c.56-5725_56-5718dupGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	2/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74536997	A A	AACACACA others(1): Show AACACACAC	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02109.hp1 HG03225.hp1 others(2): Show HG02080.hp1 HG02109.hp1 HG03225.hp1 HG03579.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0005c0022	a0001c0001t0006 a0001c0002t0007 a0001c0002t0009 others(2): Show a0001c0001t0006 a0001c0002t0007 a0001c0002t0009 a0001c0009t0004 a0005c0022t0002	a0001c0001t0006g0153 a0001c0002t0007g0064 a0001c0002t0009g0085 others(2): Show a0001c0001t0006g0153 a0001c0002t0007g0064 a0001c0002t0009g0085 a0001c0009t0004g0103 a0005c0022t0002g0053	5	174	0.0287	8	c.-80 others(27): Show c.-80-15813_-80-15806dupGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74575606	A A	AACACACA others(1): Show AACACACAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01081.hp1 HG01109.hp2 others(29): Show HG01071.hp1 HG01081.hp1 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01257.hp2 HG01934.hp1 HG02257.hp2 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02559.hp1 HG02735.hp1 HG02735.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03471.hp2 HG03710.hp1 HG04199.hp2 HG06807.hp2 NA18945.hp1 NA19030.hp1 NA19043.hp2 NA19091.hp2 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp2	a0001 a0002 a0003 others(7): Show a0001 a0002 a0003 a0004 a0006 a0007 a0008 a0009 a0010 a0011	a0001c0001 a0001c0002 a0001c0006 others(12): Show a0001c0001 a0001c0002 a0001c0006 a0001c0010 a0002c0005 a0002c0015 a0003c0003 a0003c0007 a0004c0011 a0006c0024 a0007c0025 a0008c0016 a0009c0017 a0010c0013 a0011c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(22): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0018 a0001c0006t0001 a0001c0010t0003 a0002c0005t0002 a0002c0015t0013 a0003c0003t0002 a0003c0003t0007 a0003c0007t0004 a0004c0011t0002 a0006c0024t0002 a0007c0025t0029 a0008c0016t0007 a0009c0017t0001 a0010c0013t0003 a0011c0020t0003	a0001c0001t0001g0141 a0001c0001t0002g0082 a0001c0001t0003g0023 others(29): Show a0001c0001t0001g0141 a0001c0001t0002g0082 a0001c0001t0003g0023 a0001c0001t0003g0024 a0001c0001t0003g0029 a0001c0001t0004g0090 a0001c0001t0004g0138 a0001c0001t0009g0086 a0001c0001t0018g0173 a0001c0002t0001g0124 a0001c0002t0001g0129 a0001c0002t0002g0021 a0001c0002t0002g0070 a0001c0002t0003g0016 a0001c0002t0003g0028 a0001c0002t0003g0047 a0001c0002t0005g0162 a0001c0002t0018g0174 a0001c0006t0001g0142 a0001c0010t0003g0025 a0002c0005t0002g0040 a0002c0015t0013g0019 a0003c0003t0002g0078 a0003c0003t0007g0020 a0003c0007t0004g0131 a0004c0011t0002g0071 a0006c0024t0002g0054 a0007c0025t0029g0125 a0008c0016t0007g0080 a0009c0017t0001g0115 a0010c0013t0003g0027 a0011c0020t0003g0026	32	174	0.1839	8	c.-81 others(27): Show c.-81+38777_-81+38784dupGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2125894	G G	GGTGTGTG others(1): Show GGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01258.hp1 HG02074.hp1 others(4): Show HG01257.hp2 HG01258.hp1 HG02074.hp1 HG02074.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0006 others(2): Show a0001c0001 a0001c0004 a0001c0006 a0001c0007 a0001c0009	a0001c0001t0005 a0001c0004t0001 a0001c0004t0002 others(3): Show a0001c0001t0005 a0001c0004t0001 a0001c0004t0002 a0001c0006t0002 a0001c0007t0016 a0001c0009t0004	a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0004t0001g0097 others(4): Show a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0004t0001g0097 a0001c0004t0002g0064 a0001c0006t0002g0060 a0001c0007t0016g0105 a0001c0009t0004g0005	7	116	0.0603	8	c.-14 others(29): Show c.-145+25282_-145+25289dupGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2177656	T T	TTGTGTGT others(1): Show TTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02897.hp1 HG03927.hp2 HG02559.hp1 HG02897.hp1 HG03927.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0002 a0001c0002t0005 a0001c0005t0001 a0001c0002t0002 a0001c0002t0005 a0001c0005t0001	a0001c0002t0002g0035 a0001c0002t0005g0002 a0001c0005t0001g0104 a0001c0002t0002g0035 a0001c0002t0005g0002 a0001c0005t0001g0104	3	116	0.0259	8	c.-14 others(29): Show c.-145+77047_-145+77054dupGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2191703	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01978.hp1 HG03139.hp2 others(3): Show HG00438.hp1 HG01978.hp1 HG03139.hp2 HG04184.hp1 NA18906.hp1 NA18990.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0002c0015	a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 others(3): Show a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 a0001c0003t0003 a0001c0004t0006 a0002c0015t0003	a0001c0001t0002g0074 a0001c0002t0001g0088 a0001c0003t0001g0075 others(3): Show a0001c0001t0002g0074 a0001c0002t0001g0088 a0001c0003t0001g0075 a0001c0003t0003g0070 a0001c0004t0006g0044 a0002c0015t0003g0103	6	116	0.0517	8	c.-14 others(29): Show c.-145+91065_-145+91066insCACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2191709	T T	TATACACA others(1): Show TATACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01884.hp1 HG02717.hp1 HG00642.hp1 HG01884.hp1 HG02717.hp1	a0001 a0001	a0001c0002 a0001c0005 a0001c0025 a0001c0002 a0001c0005 a0001c0025	a0001c0002t0007 a0001c0005t0001 a0001c0025t0001 a0001c0002t0007 a0001c0005t0001 a0001c0025t0001	a0001c0002t0007g0009 a0001c0005t0001g0096 a0001c0025t0001g0100 a0001c0002t0007g0009 a0001c0005t0001g0096 a0001c0025t0001g0100	3	116	0.0259	8	c.-14 others(29): Show c.-145+91071_-145+91072insTACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2326485	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG03471.hp2 NA19043.hp2 HG03471.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0086 a0001c0002t0001g0021 a0001c0001t0002g0086 a0001c0002t0001g0021	2	116	0.0172	8	c.-14 others(29): Show c.-144-12657_-144-12650dupCACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2327133	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02165.hp2 HG03927.hp1 others(1): Show HG02132.hp1 HG02165.hp2 HG03927.hp1 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0002 a0001c0003t0011 a0001c0001t0001 a0001c0002t0002 a0001c0003t0011	a0001c0001t0001g0012 a0001c0001t0001g0050 a0001c0002t0002g0035 others(1): Show a0001c0001t0001g0012 a0001c0001t0001g0050 a0001c0002t0002g0035 a0001c0003t0011g0113	4	116	0.0345	8	c.-14 others(29): Show c.-144-12033_-144-12026dupGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2327151	G G	GTGTGTGT others(1): Show GTGTGTGTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00639.hp1 HG00639.hp2 others(35): Show HG00140.hp2 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG01175.hp1 HG01243.hp1 HG01256.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01978.hp1 HG02257.hp1 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02738.hp1 HG02818.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG03239.hp1 HG03516.hp1 HG03654.hp1 NA19043.hp1 NA20300.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0010 a0001c0013 a0001c0022 a0002c0014 a0004c0011	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(21): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0006t0002 a0001c0010t0003 a0001c0013t0007 a0001c0022t0003 a0002c0014t0001 a0004c0011t0003	a0001c0001t0002g0028 a0001c0001t0003g0006 a0001c0001t0003g0095 others(35): Show a0001c0001t0002g0028 a0001c0001t0003g0006 a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0004g0081 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0098 a0001c0001t0008g0053 a0001c0002t0001g0038 a0001c0002t0002g0063 a0001c0002t0004g0017 a0001c0002t0005g0002 a0001c0002t0006g0071 a0001c0002t0007g0009 a0001c0002t0007g0080 a0001c0003t0001g0014 a0001c0003t0001g0037 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0002g0061 a0001c0003t0003g0015 a0001c0003t0003g0046 a0001c0004t0001g0036 a0001c0004t0001g0097 a0001c0004t0002g0064 a0001c0004t0006g0044 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0005t0001g0104 a0001c0006t0002g0051 a0001c0010t0003g0011 a0001c0010t0003g0077 a0001c0013t0007g0056 a0001c0022t0003g0083 a0002c0014t0001g0016 a0004c0011t0003g0065 a0004c0011t0003g0111	38	116	0.3276	8	c.-14 others(29): Show c.-144-12026_-144-12025insGTGTGTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2372768	A A	AGGCCAGG others(1): Show AGGCCAGGT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp2 HG02615.hp2 others(5): Show HG02257.hp1 HG02257.hp2 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02717.hp1 HG02818.hp2 HG02965.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0010 others(3): Show a0001c0001 a0001c0002 a0001c0010 a0001c0013 a0001c0022 a0002c0014	a0001c0001t0003 a0001c0001t0008 a0001c0002t0007 others(4): Show a0001c0001t0003 a0001c0001t0008 a0001c0002t0007 a0001c0010t0003 a0001c0013t0007 a0001c0022t0003 a0002c0014t0001	a0001c0001t0003g0101 a0001c0001t0008g0089 a0001c0002t0007g0009 others(5): Show a0001c0001t0003g0101 a0001c0001t0008g0089 a0001c0002t0007g0009 a0001c0002t0007g0080 a0001c0010t0003g0011 a0001c0013t0007g0056 a0001c0022t0003g0083 a0002c0014t0001g0016	8	116	0.0690	8	c.-89 others(27): Show c.-89+33537_-89+33544dupGCCAGGTG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2390215	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01891.hp1 HG02647.hp1 others(3): Show HG01884.hp2 HG01891.hp1 HG02647.hp1 HG03486.hp2 HG03654.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0024	a0001c0001t0001 a0001c0001t0009 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0009 a0001c0002t0001 a0001c0002t0003 a0001c0003t0003 a0001c0024t0015	a0001c0001t0001g0059 a0001c0001t0009g0052 a0001c0002t0001g0029 others(3): Show a0001c0001t0001g0059 a0001c0001t0009g0052 a0001c0002t0001g0029 a0001c0002t0003g0114 a0001c0003t0003g0015 a0001c0024t0015g0057	6	116	0.0517	8	c.-89 others(27): Show c.-89+51011_-89+51018dupGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2405587	A A	ATAGATAG others(1): Show ATAGATAGG	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG03239.hp2 HG01261.hp1 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0005 a0001c0003t0001 a0001c0001t0005 a0001c0003t0001	a0001c0001t0005g0115 a0001c0003t0001g0037 a0001c0001t0005g0115 a0001c0003t0001g0037	2	116	0.0172	8	c.-89 others(27): Show c.-89+66362_-89+66369dupGTAGATAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2450367	A A	AAAATAAA others(1): Show AAAATAAAT	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00735.hp1 HG00738.hp2 others(9): Show HG00642.hp2 HG00735.hp1 HG00738.hp2 HG01175.hp2 HG01256.hp1 HG01257.hp1 HG01258.hp2 HG01361.hp2 HG02486.hp2 HG02738.hp1 HG03239.hp2 HG03654.hp2	a0001 a0006 a0007 a0001 a0006 a0007	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0006c0028 a0007c0018	a0001c0001t0005 a0001c0002t0001 a0001c0002t0004 others(5): Show a0001c0001t0005 a0001c0002t0001 a0001c0002t0004 a0001c0003t0002 a0001c0003t0006 a0001c0004t0001 a0006c0028t0001 a0007c0018t0003	a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 others(9): Show a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0002t0001g0038 a0001c0002t0004g0017 a0001c0003t0002g0107 a0001c0003t0006g0040 a0001c0004t0001g0036 a0001c0004t0001g0106 a0006c0028t0001g0023 a0007c0018t0003g0062	12	116	0.1035	8	c.-89 others(29): Show c.-89+111158_-89+111165dupTAAATAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481033	T T	TTTTCTTT others(1): Show TTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02257.hp1 HG02647.hp1 others(2): Show HG01175.hp1 HG02257.hp1 HG02647.hp1 HG03209.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 others(2): Show a0001c0001 a0001c0002 a0001c0006 a0001c0010 a0001c0022	a0001c0001t0001 a0001c0002t0012 a0001c0006t0004 others(2): Show a0001c0001t0001 a0001c0002t0012 a0001c0006t0004 a0001c0010t0003 a0001c0022t0003	a0001c0001t0001g0059 a0001c0002t0012g0013 a0001c0006t0004g0004 others(2): Show a0001c0001t0001g0059 a0001c0002t0012g0013 a0001c0006t0004g0004 a0001c0010t0003g0077 a0001c0022t0003g0083	5	116	0.0431	8	c.-88 others(27): Show c.-88-90361_-88-90354dupTTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481055	T T	TTCTTTCT others(1): Show TTCTTTCTC	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03540.hp2 HG03139.hp2 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0007 a0001c0002t0001 a0001c0002t0007	a0001c0002t0001g0088 a0001c0002t0007g0087 a0001c0002t0001g0088 a0001c0002t0007g0087	2	116	0.0172	8	c.-88 others(27): Show c.-88-90329_-88-90322dupCTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2563121	T T	TTTCCACA others(1): Show TTTCCACAG	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02809.hp1 HG02897.hp2 others(7): Show HG02572.hp1 HG02809.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp2 HG03139.hp1 HG03516.hp2 HG06807.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0021 a0003c0008	a0001c0001t0003 a0001c0001t0004 a0001c0002t0001 others(6): Show a0001c0001t0003 a0001c0001t0004 a0001c0002t0001 a0001c0002t0007 a0001c0002t0012 a0001c0005t0001 a0001c0005t0010 a0001c0021t0002 a0003c0008t0013	a0001c0001t0003g0006 a0001c0001t0003g0058 a0001c0001t0004g0042 others(7): Show a0001c0001t0003g0006 a0001c0001t0003g0058 a0001c0001t0004g0042 a0001c0002t0001g0110 a0001c0002t0007g0080 a0001c0002t0012g0013 a0001c0005t0001g0092 a0001c0005t0010g0001 a0001c0021t0002g0025 a0003c0008t0013g0109	10	116	0.0862	8	c.-88 others(25): Show c.-88-8293_-88-8286dupTCCACAGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2584913	G G	GTAGATAG others(1): Show GTAGATAGA	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA19043.hp1 HG03041.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0033 a0001c0001t0003g0095 a0001c0001t0001g0033 a0001c0001t0003g0095	2	116	0.0172	8	c.55+ others(25): Show c.55+13358_55+13359insATAGATAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2617419	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02257.hp1 HG02486.hp2 others(6): Show HG02132.hp2 HG02257.hp1 HG02486.hp2 HG02559.hp1 HG02615.hp2 HG02809.hp2 HG02897.hp2 HG03453.hp2 NA20300.hp2	a0001 a0003 a0007 others(1): Show a0001 a0003 a0007 a0008	a0001c0001 a0001c0002 a0001c0005 others(5): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0022 a0003c0019 a0007c0018 a0008c0026	a0001c0001t0003 a0001c0002t0006 a0001c0005t0001 others(5): Show a0001c0001t0003 a0001c0002t0006 a0001c0005t0001 a0001c0006t0002 a0001c0022t0003 a0003c0019t0002 a0007c0018t0003 a0008c0026t0017	a0001c0001t0003g0006 a0001c0001t0003g0101 a0001c0002t0006g0071 others(6): Show a0001c0001t0003g0006 a0001c0001t0003g0101 a0001c0002t0006g0071 a0001c0005t0001g0104 a0001c0006t0002g0060 a0001c0022t0003g0083 a0003c0019t0002g0031 a0007c0018t0003g0062 a0008c0026t0017g0047	9	116	0.0776	8	c.55+ others(25): Show c.55+45873_55+45880dupTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2631865	C C	CAAAAAAA others(1): Show CAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02559.hp1 HG02572.hp2 others(1): Show HG02523.hp2 HG02559.hp1 HG02572.hp2 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0005 a0001c0002 a0001c0004 a0001c0005	a0001c0002t0003 a0001c0002t0005 a0001c0004t0002 others(1): Show a0001c0002t0003 a0001c0002t0005 a0001c0004t0002 a0001c0005t0001	a0001c0002t0003g0024 a0001c0002t0005g0003 a0001c0004t0002g0076 others(1): Show a0001c0002t0003g0024 a0001c0002t0005g0003 a0001c0004t0002g0076 a0001c0005t0001g0104	4	116	0.0345	8	c.55+ others(25): Show c.55+60313_55+60320dupAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2666586	C C	CTTTTTTT others(1): Show CTTTTTTTA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00735.hp1 HG00735.hp2 others(35): Show HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01175.hp1 HG01884.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02717.hp1 HG02738.hp2 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02965.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03239.hp2 HG03471.hp2 HG03540.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG04184.hp1 HG04184.hp2 HG06807.hp2 NA18906.hp1 NA19043.hp1 NA20300.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0007 a0009	a0001c0001 a0001c0002 a0001c0003 others(12): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0025 a0002c0015 a0003c0008 a0007c0018 a0009c0027	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(25): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0007 a0001c0002t0012 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0006 a0001c0006t0002 a0001c0007t0004 a0001c0009t0014 a0001c0010t0003 a0001c0013t0007 a0001c0025t0001 a0002c0015t0003 a0003c0008t0001 a0003c0008t0013 a0007c0018t0003 a0009c0027t0001	a0001c0001t0002g0030 a0001c0001t0003g0058 a0001c0001t0003g0095 others(35): Show a0001c0001t0002g0030 a0001c0001t0003g0058 a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0005g0115 a0001c0001t0008g0089 a0001c0002t0001g0021 a0001c0002t0001g0088 a0001c0002t0001g0110 a0001c0002t0002g0035 a0001c0002t0002g0078 a0001c0002t0003g0024 a0001c0002t0003g0114 a0001c0002t0007g0009 a0001c0002t0007g0112 a0001c0002t0012g0013 a0001c0003t0001g0094 a0001c0003t0002g0072 a0001c0003t0002g0107 a0001c0003t0003g0046 a0001c0003t0003g0070 a0001c0003t0011g0113 a0001c0004t0001g0036 a0001c0004t0002g0022 a0001c0004t0002g0048 a0001c0005t0001g0092 a0001c0005t0006g0032 a0001c0006t0002g0026 a0001c0007t0004g0066 a0001c0009t0014g0039 a0001c0010t0003g0077 a0001c0013t0007g0056 a0001c0025t0001g0100 a0002c0015t0003g0103 a0003c0008t0001g0084 a0003c0008t0013g0109 a0007c0018t0003g0062 a0009c0027t0001g0007	38	116	0.3276	8	c.56- others(25): Show c.56-69623_56-69616dupTTATTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2677129	T T	TTAGATAG others(1): Show TTAGATAGA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG02074.hp2 HG02257.hp2 others(7): Show HG00140.hp2 HG02074.hp2 HG02257.hp2 HG02451.hp1 HG02622.hp1 HG02886.hp1 HG03209.hp2 HG03831.hp1 HG06807.hp1 NA18906.hp1	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0001 a0001c0004 a0001c0005 others(5): Show a0001c0001 a0001c0004 a0001c0005 a0001c0007 a0001c0021 a0002c0014 a0002c0015 a0009c0027	a0001c0001t0002 a0001c0001t0008 a0001c0004t0002 others(7): Show a0001c0001t0002 a0001c0001t0008 a0001c0004t0002 a0001c0005t0006 a0001c0005t0009 a0001c0007t0016 a0001c0021t0002 a0002c0014t0001 a0002c0015t0003 a0009c0027t0001	a0001c0001t0002g0028 a0001c0001t0008g0089 a0001c0004t0002g0022 others(7): Show a0001c0001t0002g0028 a0001c0001t0008g0089 a0001c0004t0002g0022 a0001c0005t0006g0032 a0001c0005t0009g0091 a0001c0007t0016g0105 a0001c0021t0002g0025 a0002c0014t0001g0016 a0002c0015t0003g0103 a0009c0027t0001g0007	10	116	0.0862	8	c.56- others(25): Show c.56-59048_56-59041dupAGATAGAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2677482	A A	ATATCTAT others(1): Show ATATCTATC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01891.hp1 HG02165.hp1 others(10): Show HG00735.hp1 HG01891.hp1 HG02165.hp1 HG02257.hp1 HG02258.hp2 HG02559.hp1 HG02572.hp1 HG02717.hp1 HG02738.hp2 HG02809.hp2 HG02886.hp2 HG03453.hp2 HG06807.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0021 a0001c0022 a0003c0019	a0001c0001t0002 a0001c0002t0001 a0001c0002t0007 others(8): Show a0001c0001t0002 a0001c0002t0001 a0001c0002t0007 a0001c0003t0002 a0001c0004t0001 a0001c0005t0001 a0001c0006t0002 a0001c0007t0003 a0001c0021t0002 a0001c0022t0003 a0003c0019t0002	a0001c0001t0002g0030 a0001c0002t0001g0029 a0001c0002t0001g0110 others(10): Show a0001c0001t0002g0030 a0001c0002t0001g0029 a0001c0002t0001g0110 a0001c0002t0007g0009 a0001c0003t0002g0072 a0001c0004t0001g0020 a0001c0004t0001g0036 a0001c0005t0001g0104 a0001c0006t0002g0060 a0001c0007t0003g0034 a0001c0021t0002g0025 a0001c0022t0003g0083 a0003c0019t0002g0031	13	116	0.1121	8	c.56- others(25): Show c.56-58699_56-58692dupATCTATCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar

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