Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CNTN6_chr3_1088024_1409217	1098789	C C	CATATATA others(1): Show CATATATAT	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG04204.hp2 NA18951.hp1 others(1): Show HG00609.hp2 HG04204.hp2 NA18951.hp1 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 a0001c0001t0001 a0001c0003t0001 a0001c0004t0001	a0001c0001t0001g0082 a0001c0003t0001g0081 a0001c0004t0001g0080 others(1): Show a0001c0001t0001g0082 a0001c0003t0001g0081 a0001c0004t0001g0080 a0001c0004t0001g0083	4	232	0.0172	8	c.-83 others(25): Show c.-83+5691_-83+5698dupTATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1106521	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG03130.hp1 HG03239.hp1 others(1): Show HG01978.hp2 HG03130.hp1 HG03239.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0008	a0001c0001t0001 a0001c0002t0003 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0002t0003 a0001c0003t0001 a0001c0008t0001	a0001c0001t0001g0024 a0001c0002t0003g0069 a0001c0003t0001g0144 others(1): Show a0001c0001t0001g0024 a0001c0002t0003g0069 a0001c0003t0001g0144 a0001c0008t0001g0218	4	232	0.0172	8	c.-83 others(27): Show c.-83+13416_-83+13423dupACACACAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1142966	G G	GTATATAT others(1): Show GTATATATA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02922.hp1 NA18522.hp2 HG01884.hp1 HG02922.hp1 NA18522.hp2	a0001 a0001	a0001c0008 a0001c0019 a0001c0008 a0001c0019	a0001c0008t0001 a0001c0019t0001 a0001c0008t0001 a0001c0019t0001	a0001c0008t0001g0197 a0001c0008t0001g0214 a0001c0019t0001g0202 a0001c0008t0001g0197 a0001c0008t0001g0214 a0001c0019t0001g0202	3	232	0.0129	8	c.-82 others(25): Show c.-82-4960_-82-4959insATATATAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1158844	A A	ATATGTGT others(1): Show ATATGTGTG	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01258.hp1 HG01256.hp2 HG01258.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0014 a0001c0007t0001g0015	2	232	0.0086	8	c.55+ others(25): Show c.55+10784_55+10785insGTGTGTAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1158967	C C	CATATATA others(1): Show CATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02258.hp1 HG02055.hp1 HG02258.hp1	a0003 a0003	a0003c0015 a0003c0015	a0003c0015t0001 a0003c0015t0001	a0003c0015t0001g0007 a0003c0015t0001g0008 a0003c0015t0001g0007 a0003c0015t0001g0008	2	232	0.0086	8	c.55+ others(25): Show c.55+10905_55+10906insTATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1172620	C C	CTGTGTGT others(1): Show CTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02615.hp1 NA21309.hp2 HG02615.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0014 a0001c0002 a0002c0014	a0001c0002t0001 a0002c0014t0001 a0001c0002t0001 a0002c0014t0001	a0001c0002t0001g0227 a0002c0014t0001g0232 a0001c0002t0001g0227 a0002c0014t0001g0232	2	232	0.0086	8	c.55+ others(25): Show c.55+24589_55+24596dupGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245197	G G	GATATATA others(1): Show GATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02258.hp1 HG02055.hp1 HG02258.hp1	a0003 a0003	a0003c0015 a0003c0015	a0003c0015t0001 a0003c0015t0001	a0003c0015t0001g0007 a0003c0015t0001g0008 a0003c0015t0001g0007 a0003c0015t0001g0008	2	232	0.0086	8	c.358 others(27): Show c.358+17236_358+17243dupTATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1265047	T T	TTTTTTTT others(1): Show TTTTTTTTC	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02109.hp2 HG02257.hp1 others(4): Show HG01952.hp2 HG02109.hp2 HG02257.hp1 HG03130.hp2 NA18948.hp2 NA19002.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 others(2): Show a0001c0001 a0001c0003 a0001c0006 a0001c0009 a0001c0025	a0001c0001t0001 a0001c0003t0001 a0001c0006t0001 others(2): Show a0001c0001t0001 a0001c0003t0001 a0001c0006t0001 a0001c0009t0001 a0001c0025t0001	a0001c0001t0001g0129 a0001c0003t0001g0077 a0001c0006t0001g0183 others(4): Show a0001c0001t0001g0129 a0001c0003t0001g0077 a0001c0006t0001g0183 a0001c0006t0001g0185 a0001c0006t0001g0216 a0001c0009t0001g0150 a0001c0025t0001g0192	7	232	0.0302	8	c.359 others(27): Show c.359-13359_359-13358insCTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1277346	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01106.hp1 HG01109.hp2 others(11): Show HG00735.hp2 HG01106.hp1 HG01109.hp2 HG01169.hp1 HG02523.hp1 HG02647.hp1 HG02738.hp1 HG03139.hp2 HG03209.hp2 HG03669.hp2 NA18949.hp2 NA18971.hp1 NA18979.hp2 NA19065.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0008 a0005c0026	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(5): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0007t0001 a0001c0008t0001 a0005c0026t0001	a0001c0001t0001g0035 a0001c0001t0001g0086 a0001c0002t0001g0139 others(11): Show a0001c0001t0001g0035 a0001c0001t0001g0086 a0001c0002t0001g0139 a0001c0003t0001g0168 a0001c0003t0001g0172 a0001c0004t0001g0065 a0001c0004t0001g0072 a0001c0004t0001g0158 a0001c0005t0001g0113 a0001c0005t0001g0163 a0001c0007t0001g0052 a0001c0007t0001g0155 a0001c0008t0001g0010 a0005c0026t0001g0091	14	232	0.0603	8	c.359 others(25): Show c.359-1043_359-1036dupTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1280459	A A	ATTTTTTT others(1): Show ATTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01169.hp1 HG02559.hp1 others(8): Show HG01109.hp2 HG01169.hp1 HG02559.hp1 HG02572.hp2 HG02965.hp1 HG02970.hp1 HG03195.hp2 HG03516.hp2 NA18522.hp1 NA19030.hp2 NA20300.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 others(3): Show a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007	a0001c0002t0004 a0001c0003t0001 a0001c0004t0001 others(3): Show a0001c0002t0004 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001	a0001c0002t0004g0228 a0001c0003t0001g0042 a0001c0003t0001g0219 others(8): Show a0001c0002t0004g0228 a0001c0003t0001g0042 a0001c0003t0001g0219 a0001c0004t0001g0158 a0001c0005t0001g0113 a0001c0006t0001g0111 a0001c0006t0001g0195 a0001c0006t0001g0213 a0001c0006t0001g0229 a0001c0007t0001g0134 a0001c0007t0001g0135	11	232	0.0474	8	c.454 others(25): Show c.454+1967_454+1974dupTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1300449	C C	CAGGAAGG others(1): Show CAGGAAGGA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01109.hp2 HG01952.hp1 others(14): Show HG00639.hp2 HG01109.hp2 HG01952.hp1 HG02015.hp1 HG02165.hp2 HG02559.hp2 HG02896.hp1 NA18522.hp1 NA18612.hp2 NA18951.hp1 NA18953.hp2 NA18969.hp2 NA18971.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp1 NA20905.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0007c0018	a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 others(7): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0001 a0001c0008t0001 a0001c0010t0001 a0007c0018t0001	a0001c0001t0001g0126 a0001c0002t0001g0018 a0001c0002t0001g0160 others(14): Show a0001c0001t0001g0126 a0001c0002t0001g0018 a0001c0002t0001g0160 a0001c0002t0001g0174 a0001c0002t0007g0059 a0001c0003t0001g0025 a0001c0003t0001g0101 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0080 a0001c0004t0001g0089 a0001c0004t0001g0128 a0001c0005t0001g0113 a0001c0006t0001g0213 a0001c0008t0001g0212 a0001c0010t0001g0206 a0007c0018t0001g0148	17	232	0.0733	8	c.761 others(25): Show c.761+2496_761+2503dupGGAAGGAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1300557	A A	AAAAGAAA others(1): Show AAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG02258.hp2 HG02280.hp2 others(1): Show HG01255.hp2 HG02258.hp2 HG02280.hp2 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 others(1): Show a0001c0002 a0001c0003 a0001c0005 a0001c0006	a0001c0002t0009 a0001c0003t0001 a0001c0005t0001 others(1): Show a0001c0002t0009 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001	a0001c0002t0009g0205 a0001c0003t0001g0030 a0001c0005t0001g0181 others(1): Show a0001c0002t0009g0205 a0001c0003t0001g0030 a0001c0005t0001g0181 a0001c0006t0001g0036	4	232	0.0172	8	c.761 others(25): Show c.761+2608_761+2615dupAAGAAAGA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1308287	T T	TTGTGTGT others(1): Show TTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01070.hp2 HG01074.hp2 others(14): Show HG00735.hp1 HG01070.hp2 HG01074.hp2 HG01106.hp2 HG01167.hp1 HG01175.hp1 HG02027.hp1 HG02145.hp1 HG02896.hp2 HG02965.hp2 HG03492.hp1 HG03579.hp1 HG03669.hp2 HG03710.hp1 HG04204.hp2 NA18971.hp1 NA18971.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0004 others(5): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0001c0007 a0001c0008 a0001c0024 a0004c0016	a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 others(6): Show a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 a0001c0004t0005 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0024t0001 a0004c0016t0001	a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0156 others(14): Show a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0156 a0001c0002t0001g0116 a0001c0004t0001g0023 a0001c0004t0001g0041 a0001c0004t0001g0060 a0001c0004t0001g0061 a0001c0004t0001g0072 a0001c0004t0005g0110 a0001c0006t0001g0210 a0001c0007t0001g0012 a0001c0007t0001g0102 a0001c0008t0001g0087 a0001c0024t0001g0070 a0004c0016t0001g0002 a0004c0016t0001g0003	17	232	0.0733	8	c.761 others(27): Show c.761+10325_761+10332dupTGTGTGTG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1312319	A A	AATATATA others(1): Show AATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG02074.hp1 HG03669.hp1 HG00733.hp2 HG02074.hp1 HG03669.hp1	a0001 a0001	a0001c0002 a0001c0009 a0001c0002 a0001c0009	a0001c0002t0001 a0001c0009t0001 a0001c0002t0001 a0001c0009t0001	a0001c0002t0001g0084 a0001c0002t0001g0098 a0001c0009t0001g0114 a0001c0002t0001g0084 a0001c0002t0001g0098 a0001c0009t0001g0114	3	232	0.0129	8	c.762 others(25): Show c.762-9326_762-9319dupATATATAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1332495	A A	AAAGGAAG others(1): Show AAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00642.hp1 HG00733.hp1 others(30): Show HG00639.hp1 HG00642.hp1 HG00733.hp1 HG00738.hp1 HG00741.hp1 HG01070.hp2 HG01106.hp2 HG01123.hp2 HG01169.hp1 HG01175.hp1 HG01258.hp2 HG01261.hp2 HG01943.hp1 HG02132.hp1 HG02165.hp1 HG02257.hp1 HG02451.hp2 HG02523.hp2 HG02630.hp1 HG02809.hp1 HG03209.hp2 HG03225.hp1 HG03927.hp2 NA18948.hp2 NA18954.hp1 NA18980.hp2 NA19002.hp1 NA19043.hp2 NA19065.hp2 NA19084.hp2 NA20129.hp1 NA20752.hp2 NA21309.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0001c0004 others(9): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0010 a0001c0012 a0001c0013 a0002c0011 a0005c0026	a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 others(10): Show a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0010t0001 a0001c0012t0001 a0001c0013t0001 a0002c0011t0001 a0005c0026t0001	a0001c0001t0001g0013 a0001c0001t0001g0035 a0001c0001t0001g0044 others(30): Show a0001c0001t0001g0013 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0097 a0001c0001t0001g0107 a0001c0001t0001g0129 a0001c0001t0001g0156 a0001c0003t0001g0031 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0118 a0001c0003t0001g0165 a0001c0003t0001g0226 a0001c0004t0001g0041 a0001c0004t0001g0060 a0001c0004t0001g0158 a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0016 a0001c0005t0001g0106 a0001c0006t0001g0185 a0001c0006t0001g0187 a0001c0007t0001g0146 a0001c0008t0001g0043 a0001c0008t0001g0120 a0001c0010t0001g0009 a0001c0012t0001g0085 a0001c0012t0001g0104 a0001c0013t0001g0208 a0002c0011t0001g0217 a0005c0026t0001g0091	33	232	0.1422	8	c.136 others(27): Show c.1364+2590_1364+2597dupAGGAAGGA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1384812	C C	CACACACA others(1): Show CACACACAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02258.hp1 others(2): Show HG02055.hp1 HG02109.hp1 HG02258.hp1 HG03225.hp1 NA19043.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0013 a0003c0015 a0006c0027 a0001c0013 a0003c0015 a0006c0027	a0001c0013t0001 a0003c0015t0001 a0006c0027t0001 a0001c0013t0001 a0003c0015t0001 a0006c0027t0001	a0001c0013t0001g0199 a0001c0013t0001g0208 a0003c0015t0001g0007 others(2): Show a0001c0013t0001g0199 a0001c0013t0001g0208 a0003c0015t0001g0007 a0003c0015t0001g0008 a0006c0027t0001g0191	5	232	0.0216	8	c.251 others(25): Show c.2518-798_2518-797insCACACATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1384952	G G	GTCGCCTC others(1): Show GTCGCCTCT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02258.hp1 others(3): Show HG02055.hp1 HG02109.hp1 HG02258.hp1 HG03130.hp2 HG03225.hp1 NA19043.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0013 a0001c0025 a0003c0015 others(1): Show a0001c0013 a0001c0025 a0003c0015 a0006c0027	a0001c0013t0001 a0001c0025t0001 a0003c0015t0001 others(1): Show a0001c0013t0001 a0001c0025t0001 a0003c0015t0001 a0006c0027t0001	a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 others(3): Show a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 a0003c0015t0001g0007 a0003c0015t0001g0008 a0006c0027t0001g0191	6	232	0.0259	8	c.251 others(25): Show c.2518-656_2518-649dupGCCTCTTC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP1_chr17_42677531_42704993	42686469	G G	GTTTTTTT others(1): Show GTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00423.hp1 HG00544.hp2 others(29): Show HG00323.hp2 HG00423.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp2 HG00673.hp1 HG00741.hp1 HG01517.hp2 HG02027.hp1 HG02056.hp1 HG02257.hp2 HG02523.hp1 HG02738.hp1 HG03098.hp1 HG03540.hp1 HG03688.hp2 HG03942.hp2 HG04204.hp2 NA18940.hp1 NA18965.hp1 NA18973.hp1 NA18974.hp2 NA18977.hp2 NA18981.hp1 NA18995.hp2 NA18997.hp1 NA19002.hp2 NA19004.hp1 NA19064.hp1 NA19090.hp1 NA20905.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0005 a0005c0015 a0001c0001 a0001c0005 a0005c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0005t0002 a0005c0015t0002	a0001c0001t0001g0055 a0001c0001t0002g0003 a0001c0001t0002g0026 others(15): Show a0001c0001t0001g0055 a0001c0001t0002g0003 a0001c0001t0002g0026 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0122 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0006g0164 a0001c0001t0007g0050 a0001c0005t0002g0121 a0005c0015t0002g0040	32	364	0.0879	8	c.900 others(23): Show c.900+345_900+352dupTTTTTTTT	CNTNAP1	ENSG00000108797.12	transcript	ENST00000264638.9	protein_coding	6/23	INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTNAP1_chr17_42677531_42704993	42686475	T T	TTTTGTTT others(1): Show TTTTGTTTG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02109.hp1 others(8): Show HG00735.hp2 HG01891.hp1 HG02109.hp1 HG02559.hp1 HG02818.hp1 HG02976.hp2 HG03041.hp2 HG03471.hp2 HG06807.hp1 NA18522.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0110 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0110	11	364	0.0302	8	c.900 others(23): Show c.900+337_900+338insGTTTGTTT	CNTNAP1	ENSG00000108797.12	transcript	ENST00000264638.9	protein_coding	6/23	INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTNAP2_chr7_146111801_148425998	146144139	A A	ATATTTAT others(1): Show ATATTTATT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp1 HG03139.hp1 HG02486.hp2 HG02630.hp1 HG03139.hp1	a0001 a0001	a0001c0003 a0001c0008 a0001c0012 a0001c0003 a0001c0008 a0001c0012	a0001c0003t0011 a0001c0008t0001 a0001c0012t0004 a0001c0003t0011 a0001c0008t0001 a0001c0012t0004	a0001c0003t0011g0023 a0001c0008t0001g0025 a0001c0012t0004g0026 a0001c0003t0011g0023 a0001c0008t0001g0025 a0001c0012t0004g0026	3	40	0.0750	8	c.97+ others(25): Show c.97+27188_97+27195dupATTTATTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146171027	A A	AAAATAAA others(1): Show AAAATAAAT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03098.hp2 HG01891.hp1 HG03098.hp2	a0001 a0004 a0001 a0004	a0001c0002 a0004c0014 a0001c0002 a0004c0014	a0001c0002t0001 a0004c0014t0021 a0001c0002t0001 a0004c0014t0021	a0001c0002t0001g0021 a0004c0014t0021g0022 a0001c0002t0001g0021 a0004c0014t0021g0022	2	40	0.0500	8	c.97+ others(25): Show c.97+54073_97+54080dupATAAATAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146222541	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02630.hp2 NA19030.hp2 HG02630.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0016 a0001c0002 a0002c0016	a0001c0002t0002 a0002c0016t0004 a0001c0002t0002 a0002c0016t0004	a0001c0002t0002g0013 a0002c0016t0004g0024 a0001c0002t0002g0013 a0002c0016t0004g0024	2	40	0.0500	8	c.97+ others(27): Show c.97+105596_97+105603dupTGTGTGTG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146231015	A A	AAAATAAA others(1): Show AAAATAAAT	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG03139.hp2 NA18522.hp2 HG02896.hp1 HG03139.hp2 NA18522.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0011 a0005c0020 a0001c0001 a0001c0011 a0005c0020	a0001c0001t0007 a0001c0011t0016 a0005c0020t0005 a0001c0001t0007 a0001c0011t0016 a0005c0020t0005	a0001c0001t0007g0018 a0001c0011t0016g0019 a0005c0020t0005g0016 a0001c0001t0007g0018 a0001c0011t0016g0019 a0005c0020t0005g0016	3	40	0.0750	8	c.97+ others(27): Show c.97+114062_97+114069dupTAAATAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146231042	A A	ATAAATAA others(1): Show ATAAATAAG	intron_variant intron_variant	MODIFIER	HG00735.hp1 NA21309.hp1 HG00735.hp1 NA21309.hp1	a0001 a0001	a0001c0006 a0001c0010 a0001c0006 a0001c0010	a0001c0006t0014 a0001c0010t0002 a0001c0006t0014 a0001c0010t0002	a0001c0006t0014g0033 a0001c0010t0002g0014 a0001c0006t0014g0033 a0001c0010t0002g0014	2	40	0.0500	8	c.97+ others(27): Show c.97+114069_97+114070insTAAATAAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146285949	T T	TTTCCTTC others(1): Show TTTCCTTCC	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG02896.hp2 others(2): Show HG01891.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0008	a0001c0001t0006 a0001c0003t0013 a0001c0004t0003 others(1): Show a0001c0001t0006 a0001c0003t0013 a0001c0004t0003 a0001c0008t0001	a0001c0001t0006g0009 a0001c0003t0013g0010 a0001c0004t0003g0035 others(2): Show a0001c0001t0006g0009 a0001c0003t0013g0010 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0008t0001g0025	5	40	0.1250	8	c.97+ others(27): Show c.97+168996_97+169003dupCTTCCTTC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146309829	A A	AAAGGAAG others(1): Show AAAGGAAGG	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp2 NA18522.hp1 HG03225.hp1 HG03225.hp2 NA18522.hp1	a0001 a0001	a0001c0009 a0001c0013 a0001c0018 a0001c0009 a0001c0013 a0001c0018	a0001c0009t0019 a0001c0013t0003 a0001c0018t0002 a0001c0009t0019 a0001c0013t0003 a0001c0018t0002	a0001c0009t0019g0027 a0001c0013t0003g0039 a0001c0018t0002g0012 a0001c0009t0019g0027 a0001c0013t0003g0039 a0001c0018t0002g0012	3	40	0.0750	8	c.97+ others(27): Show c.97+192875_97+192882dupGGAAGGAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146324777	T T	TTATATAT others(1): Show TTATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG02896.hp2 others(2): Show HG01891.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0008	a0001c0001t0006 a0001c0003t0013 a0001c0004t0003 others(1): Show a0001c0001t0006 a0001c0003t0013 a0001c0004t0003 a0001c0008t0001	a0001c0001t0006g0009 a0001c0003t0013g0010 a0001c0004t0003g0035 others(2): Show a0001c0001t0006g0009 a0001c0003t0013g0010 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0008t0001g0025	5	40	0.1250	8	c.97+ others(27): Show c.97+207812_97+207819dupATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146358022	T T	TTTTATTT others(1): Show TTTTATTTA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03098.hp2 HG03225.hp2 HG01891.hp2 HG03098.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0018 a0001c0001 a0001c0002 a0001c0018	a0001c0001t0006 a0001c0002t0001 a0001c0018t0002 a0001c0001t0006 a0001c0002t0001 a0001c0018t0002	a0001c0001t0006g0009 a0001c0002t0001g0021 a0001c0018t0002g0012 a0001c0001t0006g0009 a0001c0002t0001g0021 a0001c0018t0002g0012	3	40	0.0750	8	c.97+ others(27): Show c.97+241069_97+241076dupATTTATTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146373405	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03225.hp1 HG03098.hp2 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0009 a0001c0002 a0001c0009	a0001c0002t0001 a0001c0009t0019 a0001c0002t0001 a0001c0009t0019	a0001c0002t0001g0021 a0001c0009t0019g0027 a0001c0002t0001g0021 a0001c0009t0019g0027	2	40	0.0500	8	c.97+ others(27): Show c.97+256453_97+256460dupACACACAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146395779	T T	TAGATGAT others(1): Show TAGATGATA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02922.hp1 NA18522.hp1 HG02451.hp1 HG02922.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0013 a0001c0001 a0001c0002 a0001c0013	a0001c0001t0012 a0001c0002t0001 a0001c0013t0003 a0001c0001t0012 a0001c0002t0001 a0001c0013t0003	a0001c0001t0012g0034 a0001c0002t0001g0007 a0001c0013t0003g0039 a0001c0001t0012g0034 a0001c0002t0001g0007 a0001c0013t0003g0039	3	40	0.0750	8	c.97+ others(27): Show c.97+278806_97+278807insAGATGATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146443230	T T	TAATAAAT others(1): Show TAATAAATA	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG01891.hp2 others(13): Show HG00735.hp2 HG01891.hp1 HG01891.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02630.hp1 HG02717.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03098.hp1 HG03139.hp2 NA18522.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0011 a0001c0012 a0001c0019 a0004c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 a0001c0003t0013 a0001c0004t0003 a0001c0004t0005 a0001c0005t0008 a0001c0011t0016 a0001c0012t0004 a0001c0019t0006 a0004c0014t0021	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 others(13): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0003t0013g0010 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0019t0006g0015 a0004c0014t0021g0022	16	40	0.4000	8	c.97+ others(27): Show c.97+326278_97+326285dupAATAAATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146444661	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03225.hp1 NA18522.hp2 others(1): Show HG01891.hp2 HG03225.hp1 NA18522.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0010 a0001c0001 a0001c0009 a0001c0010	a0001c0001t0006 a0001c0001t0007 a0001c0009t0019 others(1): Show a0001c0001t0006 a0001c0001t0007 a0001c0009t0019 a0001c0010t0002	a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0009t0019g0027 others(1): Show a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0009t0019g0027 a0001c0010t0002g0014	4	40	0.1000	8	c.97+ others(27): Show c.97+327695_97+327702dupTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146450935	A A	ATATTTAT others(1): Show ATATTTATT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG02886.hp2 others(4): Show HG02486.hp2 HG02630.hp2 HG02886.hp2 HG02976.hp1 HG03098.hp2 HG03139.hp1 NA20129.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 others(3): Show a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0015	a0001c0002t0001 a0001c0002t0002 a0001c0003t0011 others(4): Show a0001c0002t0001 a0001c0002t0002 a0001c0003t0011 a0001c0005t0022 a0001c0006t0009 a0001c0008t0001 a0001c0015t0001	a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0003t0011g0023 others(4): Show a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0003t0011g0023 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0008t0001g0025 a0001c0015t0001g0011	7	40	0.1750	8	c.98- others(27): Show c.98-323314_98-323307dupATTTATTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146474999	A A	ACGCGCGC others(1): Show ACGCGCGCG	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02976.hp1 HG03139.hp1 HG02630.hp2 HG02976.hp1 HG03139.hp1	a0001 a0001	a0001c0002 a0001c0008 a0001c0015 a0001c0002 a0001c0008 a0001c0015	a0001c0002t0002 a0001c0008t0001 a0001c0015t0001 a0001c0002t0002 a0001c0008t0001 a0001c0015t0001	a0001c0002t0002g0013 a0001c0008t0001g0025 a0001c0015t0001g0011 a0001c0002t0002g0013 a0001c0008t0001g0025 a0001c0015t0001g0011	3	40	0.0750	8	c.98- others(27): Show c.98-299264_98-299257dupGCGCGCGC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146525570	A A	ATCTATCT others(1): Show ATCTATCTC	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02976.hp2 HG03098.hp1 HG02717.hp2 HG02976.hp2 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 a0001c0001 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0003t0020 a0001c0005t0008 a0001c0001t0001 a0001c0003t0020 a0001c0005t0008	a0001c0001t0001g0003 a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0001t0001g0003 a0001c0003t0020g0017 a0001c0005t0008g0005	3	40	0.0750	8	c.98- others(27): Show c.98-248693_98-248686dupCTCTATCT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146591414	T T	TGCAGTGG others(1): Show TGCAGTGGG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01891.hp1 others(34): Show HG00735.hp1 HG00735.hp2 HG01891.hp1 HG01891.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03540.hp1 HG03540.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA20129.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(16): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0001c0011 a0001c0012 a0001c0013 a0001c0015 a0001c0018 a0001c0019 a0002c0016 a0002c0017 a0003c0007 a0004c0014 a0005c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(28): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0004 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0004t0003 a0001c0004t0005 a0001c0005t0008 a0001c0005t0022 a0001c0006t0009 a0001c0006t0014 a0001c0008t0001 a0001c0010t0002 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 others(34): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0006t0014g0033 a0001c0008t0001g0025 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022 a0005c0020t0005g0016	37	40	0.9250	8	c.98- others(27): Show c.98-182857_98-182856insGCAGTGGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146594433	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG03098.hp2 HG03139.hp1 others(1): Show HG02897.hp1 HG03098.hp2 HG03139.hp1 NA20129.hp1	a0001 a0001	a0001c0002 a0001c0006 a0001c0008 a0001c0002 a0001c0006 a0001c0008	a0001c0002t0001 a0001c0006t0009 a0001c0008t0001 a0001c0002t0001 a0001c0006t0009 a0001c0008t0001	a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0006t0009g0028 others(1): Show a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0006t0009g0028 a0001c0008t0001g0025	4	40	0.1000	8	c.98- others(27): Show c.98-179821_98-179814dupACACACAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146596595	C C	CAGAGAGA others(1): Show CAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG03225.hp2 HG02886.hp2 HG03225.hp2	a0001 a0001	a0001c0005 a0001c0018 a0001c0005 a0001c0018	a0001c0005t0022 a0001c0018t0002 a0001c0005t0022 a0001c0018t0002	a0001c0005t0022g0032 a0001c0018t0002g0012 a0001c0005t0022g0032 a0001c0018t0002g0012	2	40	0.0500	8	c.98- others(27): Show c.98-177638_98-177631dupGAGAGAGA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146617017	T T	TTTTGTTT others(1): Show TTTTGTTTG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02451.hp1 HG02451.hp2 others(20): Show HG01891.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02976.hp1 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03225.hp2 HG03239.hp2 HG03540.hp1 HG03540.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp2 NA20129.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0001c0013 a0001c0015 a0001c0018 a0002c0016 a0005c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0004 a0001c0004t0003 a0001c0004t0005 a0001c0005t0022 a0001c0006t0009 a0001c0008t0001 a0001c0010t0002 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0002c0016t0004 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 others(20): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0008t0001g0025 a0001c0010t0002g0014 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0002c0016t0004g0024 a0005c0020t0005g0016	23	40	0.5750	8	c.98- others(27): Show c.98-157242_98-157235dupGTTTGTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146617017	T T	TTTTTTTT others(1): Show TTTTTTTTG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02486.hp1 others(8): Show HG00735.hp2 HG01891.hp1 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02976.hp2 HG03139.hp2 HG03239.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0003 a0001c0005 others(6): Show a0001c0001 a0001c0003 a0001c0005 a0001c0011 a0001c0012 a0001c0019 a0002c0017 a0003c0007 a0004c0014	a0001c0001t0007 a0001c0003t0011 a0001c0003t0013 others(8): Show a0001c0001t0007 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0005t0008 a0001c0011t0016 a0001c0012t0004 a0001c0019t0006 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021	a0001c0001t0007g0020 a0001c0003t0011g0023 a0001c0003t0013g0010 others(8): Show a0001c0001t0007g0020 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0019t0006g0015 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022	11	40	0.2750	8	c.98- others(27): Show c.98-157251_98-157250insTTTTGTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146622243	A A	ATATCTAT others(1): Show ATATCTATC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02886.hp1 HG03225.hp1 others(1): Show HG00735.hp1 HG02886.hp1 HG03225.hp1 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0006 a0001c0009 a0001c0003 a0001c0006 a0001c0009	a0001c0003t0013 a0001c0003t0023 a0001c0006t0014 others(1): Show a0001c0003t0013 a0001c0003t0023 a0001c0006t0014 a0001c0009t0019	a0001c0003t0013g0010 a0001c0003t0023g0030 a0001c0006t0014g0033 others(1): Show a0001c0003t0013g0010 a0001c0003t0023g0030 a0001c0006t0014g0033 a0001c0009t0019g0027	4	40	0.1000	8	c.98- others(27): Show c.98-151996_98-151989dupCTATCTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146694883	A A	AATTCTGA others(1): Show AATTCTGAG	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02717.hp2 HG02922.hp1 HG02451.hp2 HG02717.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0001t0012 a0001c0005t0008 a0001c0001t0002 a0001c0001t0012 a0001c0005t0008	a0001c0001t0002g0006 a0001c0001t0012g0034 a0001c0005t0008g0005 a0001c0001t0002g0006 a0001c0001t0012g0034 a0001c0005t0008g0005	3	40	0.0750	8	c.98- others(25): Show c.98-79387_98-79380dupATTCTGAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146761284	T T	TGGAAGGA others(1): Show TGGAAGGAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02896.hp1 HG03139.hp2 others(1): Show HG02451.hp1 HG02896.hp1 HG03139.hp2 HG03540.hp1	a0001 a0005 a0001 a0005	a0001c0002 a0001c0011 a0005c0020 a0001c0002 a0001c0011 a0005c0020	a0001c0002t0001 a0001c0002t0010 a0001c0011t0016 others(1): Show a0001c0002t0001 a0001c0002t0010 a0001c0011t0016 a0005c0020t0005	a0001c0002t0001g0007 a0001c0002t0010g0002 a0001c0011t0016g0019 others(1): Show a0001c0002t0001g0007 a0001c0002t0010g0002 a0001c0011t0016g0019 a0005c0020t0005g0016	4	40	0.1000	8	c.98- others(25): Show c.98-12942_98-12935dupGGAAGGAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146770317	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 NA21309.hp1 HG02896.hp2 HG02897.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0010 a0001c0004 a0001c0010	a0001c0004t0003 a0001c0010t0002 a0001c0004t0003 a0001c0010t0002	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0010t0002g0014 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0010t0002g0014	3	40	0.0750	8	c.98- others(23): Show c.98-3928_98-3921dupCACACACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146842994	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02896.hp1 HG03139.hp2 others(1): Show HG02886.hp2 HG02896.hp1 HG03139.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0005 a0001c0010 a0001c0011 others(1): Show a0001c0005 a0001c0010 a0001c0011 a0005c0020	a0001c0005t0022 a0001c0010t0002 a0001c0011t0016 others(1): Show a0001c0005t0022 a0001c0010t0002 a0001c0011t0016 a0005c0020t0005	a0001c0005t0022g0032 a0001c0010t0002g0014 a0001c0011t0016g0019 others(1): Show a0001c0005t0022g0032 a0001c0010t0002g0014 a0001c0011t0016g0019 a0005c0020t0005g0016	4	40	0.1000	8	c.402 others(25): Show c.402+3112_402+3119dupTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146856297	G G	GATACATA others(1): Show GATACATAC	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG03225.hp1 HG03540.hp1 HG02717.hp1 HG03225.hp1 HG03540.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0009 a0002c0017 a0001c0002 a0001c0009 a0002c0017	a0001c0002t0010 a0001c0009t0019 a0002c0017t0015 a0001c0002t0010 a0001c0009t0019 a0002c0017t0015	a0001c0002t0010g0002 a0001c0009t0019g0027 a0002c0017t0015g0037 a0001c0002t0010g0002 a0001c0009t0019g0027 a0002c0017t0015g0037	3	40	0.0750	8	c.402 others(27): Show c.402+16433_402+16440dupCATACATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146937364	A A	AATAAAAA others(1): Show AATAAAAAT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG03239.hp2 HG00735.hp1 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0006 a0001c0002 a0001c0006	a0001c0002t0002 a0001c0006t0014 a0001c0002t0002 a0001c0006t0014	a0001c0002t0002g0040 a0001c0006t0014g0033 a0001c0002t0002g0040 a0001c0006t0014g0033	2	40	0.0500	8	c.402 others(27): Show c.402+97461_402+97462insTAAAAATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147081583	T T	TTGTGTGT others(1): Show TTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA20129.hp2 NA18522.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0007 a0001c0003t0023 a0001c0001t0007 a0001c0003t0023	a0001c0001t0007g0018 a0001c0003t0023g0030 a0001c0001t0007g0018 a0001c0003t0023g0030	2	40	0.0500	8	c.551 others(27): Show c.551-26526_551-26519dupGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147090322	C C	CGTGTGTG others(1): Show CGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02451.hp1 HG02896.hp1 others(5): Show HG00735.hp2 HG02451.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp2 NA19030.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0010 a0001c0019 a0002c0016 a0005c0020	a0001c0001t0018 a0001c0002t0001 a0001c0004t0003 others(4): Show a0001c0001t0018 a0001c0002t0001 a0001c0004t0003 a0001c0010t0002 a0001c0019t0006 a0002c0016t0004 a0005c0020t0005	a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0004t0003g0035 others(5): Show a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0010t0002g0014 a0001c0019t0006g0015 a0002c0016t0004g0024 a0005c0020t0005g0016	8	40	0.2000	8	c.551 others(27): Show c.551-17802_551-17795dupGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147102282	G G	GAAAAAAA others(1): Show GAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02451.hp2 HG02486.hp1 others(11): Show HG01891.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02897.hp2 HG03098.hp2 HG03139.hp2 HG03239.hp1 HG03540.hp2 NA21309.hp1 NA21309.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0010 a0001c0011 a0003c0007 a0005c0020	a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 others(11): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0003t0004 a0001c0003t0011 a0001c0003t0013 a0001c0004t0003 a0001c0005t0022 a0001c0010t0002 a0001c0011t0016 a0003c0007t0017 a0005c0020t0005	a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0020 others(11): Show a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0021 a0001c0003t0004g0029 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0004t0003g0036 a0001c0005t0022g0032 a0001c0010t0002g0014 a0001c0011t0016g0019 a0003c0007t0017g0031 a0005c0020t0005g0016	14	40	0.3500	8	c.551 others(25): Show c.551-5857_551-5850dupAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar

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