Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
AFF1_chr4_86930011_87146039	87084550	C C	CAATAAAT others(1): Show CAATAAATA	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG03098.hp2 NA18977.hp1 others(4): Show HG02015.hp1 HG03098.hp2 NA18977.hp1 NA19009.hp2 NA19060.hp2 NA19085.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0001 a0001c0001t0002 a0001c0016t0069 a0001c0001t0001 a0001c0001t0002 a0001c0016t0069	a0001c0001t0001g0090 a0001c0001t0001g0139 a0001c0001t0001g0143 others(4): Show a0001c0001t0001g0090 a0001c0001t0001g0139 a0001c0001t0001g0143 a0001c0001t0001g0146 a0001c0001t0001g0164 a0001c0001t0002g0248 a0001c0016t0069g0088	7	294	0.0238	8	c.110 others(25): Show c.1104+433_1104+440dupTAAATAAA	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF2_chrX_148495617_149005663	148521374	G G	GCACACAC others(1): Show GCACACACA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01243.hp1 HG01891.hp1 others(17): Show HG01109.hp1 HG01243.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG02451.hp2 HG02647.hp1 HG02717.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp1 HG03486.hp1 HG03540.hp2 NA19043.hp1 NA19063.hp1 NA19066.hp1 NA19091.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0020 a0001c0001t0035 a0001c0001t0044 a0001c0001t0046 a0001c0001t0090 a0001c0001t0098 a0001c0001t0110 a0001c0002t0009 a0001c0002t0019 a0001c0002t0047 a0001c0002t0094	a0001c0001t0001g0019 a0001c0001t0002g0020 a0001c0001t0005g0001 others(17): Show a0001c0001t0001g0019 a0001c0001t0002g0020 a0001c0001t0005g0001 a0001c0001t0005g0021 a0001c0001t0005g0022 a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0128 a0001c0001t0020g0109 a0001c0001t0035g0078 a0001c0001t0044g0127 a0001c0001t0046g0165 a0001c0001t0090g0099 a0001c0001t0098g0119 a0001c0001t0110g0118 a0001c0002t0009g0126 a0001c0002t0019g0123 a0001c0002t0047g0108 a0001c0002t0094g0106	20	169	0.1183	8	c.47+ others(25): Show c.47+20260_47+20267dupACACACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148576793	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02451.hp2 HG03041.hp1 others(1): Show HG01934.hp1 HG02451.hp2 HG03041.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0001t0098 a0001c0002t0094 a0001c0001t0010 a0001c0001t0098 a0001c0002t0094	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0098g0119 others(1): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0098g0119 a0001c0002t0094g0106	4	169	0.0237	8	c.48- others(25): Show c.48-75189_48-75182dupTGTGTGTG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581281	T T	TATACACA others(1): Show TATACACAC	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02145.hp1 HG02451.hp2 others(7): Show HG01934.hp1 HG02145.hp1 HG02451.hp2 HG02818.hp1 HG02895.hp1 HG03486.hp1 HG03540.hp2 NA18943.hp1 NA20752.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0005 a0001c0001t0010 a0001c0001t0014 others(6): Show a0001c0001t0005 a0001c0001t0010 a0001c0001t0014 a0001c0001t0022 a0001c0001t0046 a0001c0001t0098 a0001c0001t0106 a0001c0002t0009 a0001c0003t0109	a0001c0001t0005g0022 a0001c0001t0010g0115 a0001c0001t0010g0116 others(7): Show a0001c0001t0005g0022 a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0014g0058 a0001c0001t0022g0134 a0001c0001t0046g0165 a0001c0001t0098g0119 a0001c0001t0106g0121 a0001c0002t0009g0126 a0001c0003t0109g0122	10	169	0.0592	8	c.48- others(25): Show c.48-70715_48-70714insCACACATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581281	T T	TGTACACA others(1): Show TGTACACAC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02257.hp2 NA20300.hp1 others(2): Show HG01109.hp1 HG02257.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005	a0001c0001t0010 a0001c0001t0077 a0001c0002t0102 others(2): Show a0001c0001t0010 a0001c0001t0077 a0001c0002t0102 a0001c0003t0079 a0001c0005t0023	a0001c0001t0010g0124 a0001c0001t0077g0095 a0001c0002t0102g0094 others(2): Show a0001c0001t0010g0124 a0001c0001t0077g0095 a0001c0002t0102g0094 a0001c0003t0079g0161 a0001c0005t0023g0129	5	169	0.0296	8	c.48- others(25): Show c.48-70718_48-70717insGTACACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20			chrX	TogoVar
AFF2_chrX_148495617_149005663	148581303	C C	CACACACG others(1): Show CACACACGT	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0078 a0001c0001t0035g0078	1	169	0.0059	8	c.48- others(25): Show c.48-70695_48-70694insCACACGTA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581355	C C	CACACACG others(1): Show CACACACGT	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0095 a0001c0004t0095	a0001c0004t0095g0113 a0001c0004t0095g0113	1	169	0.0059	8	c.48- others(25): Show c.48-70643_48-70642insCACACGTA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581356	A A	ACATACAC others(1): Show ACATACACG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01106.hp1 HG01192.hp1 others(9): Show HG00140.hp1 HG01106.hp1 HG01192.hp1 HG01258.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp2 HG04199.hp1 HG04228.hp1 NA18962.hp1 NA18989.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 others(6): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0015 a0001c0001t0037 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085	a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0005g0001 others(9): Show a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0007g0089 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0015g0060 a0001c0001t0037g0037 a0001c0001t0083g0024 a0001c0001t0084g0030 a0001c0001t0085g0167	12	169	0.0710	8	c.48- others(25): Show c.48-70643_48-70642insCATACACG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20			chrX	TogoVar
AFF2_chrX_148495617_149005663	148581356	A A	ATATACAC others(1): Show ATATACACG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00621.hp1 HG00639.hp2 others(62): Show HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG01074.hp1 HG01109.hp1 HG01167.hp1 HG01256.hp1 HG01261.hp1 HG01891.hp2 HG01928.hp1 HG01952.hp1 HG02040.hp1 HG02083.hp1 HG02132.hp1 HG02145.hp1 HG02257.hp2 HG02280.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03486.hp1 HG03490.hp1 HG03688.hp1 HG03942.hp1 NA18943.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18959.hp1 NA18965.hp1 NA18966.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18988.hp1 NA18994.hp1 NA19004.hp1 NA19005.hp1 NA19009.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19086.hp1 NA19088.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0002c0009 a0003c0008 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(51): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0014 a0001c0001t0017 a0001c0001t0022 a0001c0001t0024 a0001c0001t0036 a0001c0001t0038 a0001c0001t0041 a0001c0001t0046 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0052 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0060 a0001c0001t0061 a0001c0001t0064 a0001c0001t0070 a0001c0001t0077 a0001c0001t0089 a0001c0001t0090 a0001c0001t0092 a0001c0001t0096 a0001c0001t0100 a0001c0001t0106 a0001c0001t0110 a0001c0001t0114 a0001c0001t0116 a0001c0001t0121 a0001c0001t0123 a0001c0002t0022 a0001c0002t0034 a0001c0002t0054 a0001c0002t0094 a0001c0002t0102 a0001c0002t0108 a0001c0002t0111 a0001c0003t0079 a0001c0003t0109 a0001c0003t0112 a0002c0009t0103 a0003c0008t0045 a0004c0006t0012	a0001c0001t0001g0019 a0001c0001t0001g0068 a0001c0001t0002g0020 others(62): Show a0001c0001t0001g0019 a0001c0001t0001g0068 a0001c0001t0002g0020 a0001c0001t0002g0029 a0001c0001t0002g0062 a0001c0001t0002g0085 a0001c0001t0002g0166 a0001c0001t0003g0042 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0004g0041 a0001c0001t0004g0100 a0001c0001t0005g0022 a0001c0001t0006g0120 a0001c0001t0007g0038 a0001c0001t0007g0048 a0001c0001t0009g0143 a0001c0001t0010g0124 a0001c0001t0013g0034 a0001c0001t0013g0072 a0001c0001t0014g0058 a0001c0001t0017g0040 a0001c0001t0022g0134 a0001c0001t0024g0091 a0001c0001t0036g0139 a0001c0001t0038g0102 a0001c0001t0041g0071 a0001c0001t0046g0165 a0001c0001t0048g0013 a0001c0001t0049g0105 a0001c0001t0050g0026 a0001c0001t0052g0064 a0001c0001t0056g0023 a0001c0001t0057g0135 a0001c0001t0058g0097 a0001c0001t0060g0067 a0001c0001t0061g0098 a0001c0001t0064g0084 a0001c0001t0070g0044 a0001c0001t0077g0095 a0001c0001t0089g0110 a0001c0001t0090g0099 a0001c0001t0092g0008 a0001c0001t0096g0146 a0001c0001t0100g0140 a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0114g0079 a0001c0001t0116g0075 a0001c0001t0121g0046 a0001c0001t0123g0090 a0001c0002t0022g0003 a0001c0002t0034g0077 a0001c0002t0054g0133 a0001c0002t0094g0106 a0001c0002t0102g0094 a0001c0002t0108g0002 a0001c0002t0111g0096 a0001c0003t0079g0161 a0001c0003t0109g0122 a0001c0003t0112g0130 a0002c0009t0103g0050 a0003c0008t0045g0010 a0004c0006t0012g0011	65	169	0.3846	8	c.48- others(25): Show c.48-70639_48-70638insCACGTATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581388	G G	GTATACAC others(1): Show GTATACACA	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0105 a0001c0002t0105	a0001c0002t0105g0117 a0001c0002t0105g0117	1	169	0.0059	8	c.48- others(25): Show c.48-70607_48-70606insCACATATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581439	C C	CACACACG others(1): Show CACACACGT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02895.hp1 HG03486.hp1 others(1): Show HG02145.hp1 HG02895.hp1 HG03486.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0022 a0001c0001t0046 a0001c0001t0106 others(1): Show a0001c0001t0022 a0001c0001t0046 a0001c0001t0106 a0001c0003t0109	a0001c0001t0022g0134 a0001c0001t0046g0165 a0001c0001t0106g0121 others(1): Show a0001c0001t0022g0134 a0001c0001t0046g0165 a0001c0001t0106g0121 a0001c0003t0109g0122	4	169	0.0237	8	c.48- others(25): Show c.48-70559_48-70558insCACACGTA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614693	T T	TTTTCTTT others(1): Show TTTTCTTTC	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0039	1	169	0.0059	8	c.48- others(25): Show c.48-37273_48-37266dupTTTCTTTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614738	T T	TTTTCTTT others(1): Show TTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG02976.hp2 HG03654.hp1 others(1): Show HG01069.hp1 HG02976.hp2 HG03654.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0006 a0001c0001t0073 a0001c0001t0074 others(1): Show a0001c0001t0006 a0001c0001t0073 a0001c0001t0074 a0001c0003t0026	a0001c0001t0006g0163 a0001c0001t0073g0074 a0001c0001t0074g0033 others(1): Show a0001c0001t0006g0163 a0001c0001t0073g0074 a0001c0001t0074g0033 a0001c0003t0026g0157	4	169	0.0237	8	c.48- others(25): Show c.48-37214_48-37207dupTCTTTCTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614796	T T	TCCTTTCT others(1): Show TCCTTTCTC	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0077 a0001c0001t0077	a0001c0001t0077g0095 a0001c0001t0077g0095	1	169	0.0059	8	c.48- others(25): Show c.48-37203_48-37202insCCTTTCTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20			chrX	TogoVar
AFF2_chrX_148495617_149005663	148623600	A A	AATATATA others(1): Show AATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02280.hp1 NA19240.hp2 HG02258.hp1 HG02280.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0038 a0001c0002t0054 a0001c0007t0080 a0001c0001t0038 a0001c0002t0054 a0001c0007t0080	a0001c0001t0038g0102 a0001c0002t0054g0133 a0001c0007t0080g0162 a0001c0001t0038g0102 a0001c0002t0054g0133 a0001c0007t0080g0162	3	169	0.0178	8	c.48- others(25): Show c.48-28386_48-28379dupATATATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148666585	A A	AAAATAAA others(1): Show AAAATAAAT	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0043 a0001c0001t0004g0043	1	169	0.0059	8	c.104 others(27): Show c.1041+3856_1041+3863dupATAAATAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148700419	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01978.hp1 HG03017.hp1 others(3): Show HG00642.hp1 HG01978.hp1 HG03017.hp1 NA18948.hp1 NA18994.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0009 others(3): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0001t0055 a0001c0001t0100	a0001c0001t0002g0062 a0001c0001t0007g0038 a0001c0001t0009g0142 others(3): Show a0001c0001t0002g0062 a0001c0001t0007g0038 a0001c0001t0009g0142 a0001c0001t0013g0072 a0001c0001t0055g0025 a0001c0001t0100g0140	6	169	0.0355	8	c.104 others(29): Show c.1041+37687_1041+37694dupTGTGTGTG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148701011	A A	AGAGAATG others(1): Show AGAGAATGT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02976.hp2 HG02257.hp1 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0011 a0001c0003t0026 a0001c0001t0011 a0001c0003t0026	a0001c0001t0011g0112 a0001c0003t0026g0157 a0001c0001t0011g0112 a0001c0003t0026g0157	2	169	0.0118	8	c.104 others(29): Show c.1041+38243_1041+38244insGAGAATGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20			chrX	TogoVar
AFF2_chrX_148495617_149005663	148701011	A A	AGAGAGAA others(1): Show AGAGAGAAT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00673.hp1 HG01943.hp1 others(7): Show HG00639.hp1 HG00673.hp1 HG01943.hp1 HG02055.hp1 HG02486.hp1 HG02976.hp1 NA18522.hp1 NA19043.hp1 NA19240.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0016 a0001c0001t0051 a0001c0001t0076 others(6): Show a0001c0001t0016 a0001c0001t0051 a0001c0001t0076 a0001c0001t0086 a0001c0001t0093 a0001c0002t0018 a0001c0002t0019 a0001c0002t0032 a0001c0002t0047	a0001c0001t0016g0154 a0001c0001t0016g0155 a0001c0001t0051g0069 others(7): Show a0001c0001t0016g0154 a0001c0001t0016g0155 a0001c0001t0051g0069 a0001c0001t0076g0153 a0001c0001t0086g0031 a0001c0001t0093g0007 a0001c0002t0018g0156 a0001c0002t0019g0107 a0001c0002t0032g0114 a0001c0002t0047g0108	10	169	0.0592	8	c.104 others(29): Show c.1041+38243_1041+38244insGAGAGAAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20			chrX	TogoVar
AFF2_chrX_148495617_149005663	148701012	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02040.hp1 HG03490.hp1 others(1): Show HG01167.hp1 HG02040.hp1 HG03490.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0049 a0001c0001t0061 others(1): Show a0001c0001t0013 a0001c0001t0049 a0001c0001t0061 a0001c0001t0070	a0001c0001t0013g0072 a0001c0001t0049g0105 a0001c0001t0061g0098 others(1): Show a0001c0001t0013g0072 a0001c0001t0049g0105 a0001c0001t0061g0098 a0001c0001t0070g0044	4	169	0.0237	8	c.104 others(29): Show c.1041+38278_1041+38285dupGTGTGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148749947	C C	CTTTATTT others(1): Show CTTTATTTA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02818.hp1 HG02886.hp2 others(3): Show HG02145.hp1 HG02818.hp1 HG02886.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005	a0001c0001t0006 a0001c0001t0022 a0001c0001t0077 others(3): Show a0001c0001t0006 a0001c0001t0022 a0001c0001t0077 a0001c0002t0009 a0001c0003t0109 a0001c0005t0023	a0001c0001t0006g0120 a0001c0001t0022g0134 a0001c0001t0077g0095 others(3): Show a0001c0001t0006g0120 a0001c0001t0022g0134 a0001c0001t0077g0095 a0001c0002t0009g0126 a0001c0003t0109g0122 a0001c0005t0023g0129	6	169	0.0355	8	c.104 others(29): Show c.1042-59901_1042-59894dupATTTATTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148762420	T T	TATATATA others(1): Show TATATATAC	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0091 a0001c0002t0091	a0001c0002t0091g0136 a0001c0002t0091g0136	1	169	0.0059	8	c.104 others(29): Show c.1042-47455_1042-47454insTATATACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148762480	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02280.hp2 HG02895.hp1 others(5): Show HG02056.hp1 HG02280.hp2 HG02895.hp1 HG03098.hp1 NA19007.hp1 NA19043.hp1 NA19091.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0027 a0001c0001t0081 others(5): Show a0001c0001t0002 a0001c0001t0027 a0001c0001t0081 a0001c0001t0106 a0001c0002t0018 a0001c0002t0047 a0001c0002t0082 a0001c0002t0091	a0001c0001t0002g0020 a0001c0001t0027g0017 a0001c0001t0081g0052 others(5): Show a0001c0001t0002g0020 a0001c0001t0027g0017 a0001c0001t0081g0052 a0001c0001t0106g0121 a0001c0002t0018g0156 a0001c0002t0047g0108 a0001c0002t0082g0016 a0001c0002t0091g0136	8	169	0.0473	8	c.104 others(29): Show c.1042-47374_1042-47367dupGTGTGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148762508	G G	GTGTGTGT others(1): Show GTGTGTGTA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG02055.hp1 HG02257.hp1 others(6): Show HG00639.hp1 HG02055.hp1 HG02257.hp1 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG03225.hp1 NA18522.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0011 a0001c0001t0016 a0001c0001t0076 others(5): Show a0001c0001t0011 a0001c0001t0016 a0001c0001t0076 a0001c0001t0098 a0001c0002t0019 a0001c0002t0029 a0001c0002t0078 a0001c0002t0107	a0001c0001t0011g0112 a0001c0001t0016g0154 a0001c0001t0016g0155 others(6): Show a0001c0001t0011g0112 a0001c0001t0016g0154 a0001c0001t0016g0155 a0001c0001t0076g0153 a0001c0001t0098g0119 a0001c0002t0019g0107 a0001c0002t0029g0149 a0001c0002t0078g0152 a0001c0002t0107g0131	9	169	0.0533	8	c.104 others(29): Show c.1042-47367_1042-47366insGTGTGTAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148773681	G G	GGAAAGAA others(1): Show GGAAAGAAA	intron_variant intron_variant	MODIFIER	HG06807.hp2 NA19012.hp1 HG06807.hp2 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0014 a0001c0005t0023 a0001c0001t0014 a0001c0005t0023	a0001c0001t0014g0055 a0001c0005t0023g0125 a0001c0001t0014g0055 a0001c0005t0023g0125	2	169	0.0118	8	c.104 others(29): Show c.1042-36192_1042-36191insAGAAAGAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148773685	G G	GGAAAGAA others(1): Show GGAAAGAAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00609.hp1 HG00621.hp1 others(26): Show HG00140.hp1 HG00609.hp1 HG00621.hp1 HG01167.hp1 HG01192.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01884.hp2 HG02015.hp1 HG02135.hp1 HG02602.hp1 HG02622.hp1 HG02698.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03942.hp1 HG04199.hp1 NA18612.hp1 NA18943.hp1 NA18961.hp1 NA18962.hp1 NA18982.hp1 NA18995.hp1 NA19004.hp1 NA19086.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(25): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0014 a0001c0001t0015 a0001c0001t0021 a0001c0001t0024 a0001c0001t0041 a0001c0001t0052 a0001c0001t0056 a0001c0001t0057 a0001c0001t0061 a0001c0001t0062 a0001c0001t0065 a0001c0001t0070 a0001c0001t0073 a0001c0001t0074 a0001c0001t0084 a0001c0001t0115 a0001c0001t0117 a0001c0002t0018 a0001c0002t0031 a0001c0002t0101	a0001c0001t0002g0166 a0001c0001t0003g0042 a0001c0001t0003g0066 others(26): Show a0001c0001t0002g0166 a0001c0001t0003g0042 a0001c0001t0003g0066 a0001c0001t0004g0041 a0001c0001t0005g0022 a0001c0001t0006g0138 a0001c0001t0007g0089 a0001c0001t0008g0073 a0001c0001t0009g0143 a0001c0001t0014g0058 a0001c0001t0015g0060 a0001c0001t0021g0103 a0001c0001t0024g0093 a0001c0001t0041g0071 a0001c0001t0052g0064 a0001c0001t0056g0023 a0001c0001t0057g0135 a0001c0001t0061g0098 a0001c0001t0062g0087 a0001c0001t0065g0056 a0001c0001t0070g0044 a0001c0001t0073g0074 a0001c0001t0074g0033 a0001c0001t0084g0030 a0001c0001t0115g0080 a0001c0001t0117g0164 a0001c0002t0018g0151 a0001c0002t0031g0148 a0001c0002t0101g0160	29	169	0.1716	8	c.104 others(29): Show c.1042-36136_1042-36129dupAAGAAAGA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148773685	G G	GGAAGGAA others(1): Show GGAAGGAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01934.hp1 HG02976.hp1 others(2): Show HG01884.hp1 HG01934.hp1 HG02976.hp1 HG03540.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0010 a0001c0001t0038 a0001c0002t0032 others(1): Show a0001c0001t0010 a0001c0001t0038 a0001c0002t0032 a0001c0003t0030	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0038g0102 others(2): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0038g0102 a0001c0002t0032g0114 a0001c0003t0030g0158	5	169	0.0296	8	c.104 others(29): Show c.1042-36188_1042-36187insGGAAAGAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148795832	A A	AAAAAATA others(1): Show AAAAAATAT	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0009 a0001c0001t0005g0009	1	169	0.0059	8	c.104 others(29): Show c.1042-14043_1042-14042insAAAATATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148795832	A A	AAAATATA others(1): Show AAAATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0117 a0001c0001t0117	a0001c0001t0117g0164 a0001c0001t0117g0164	1	169	0.0059	8	c.104 others(29): Show c.1042-14043_1042-14042insAATATATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148795872	T T	TATATATA others(1): Show TATATATAC	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0111 a0001c0002t0111	a0001c0002t0111g0096 a0001c0002t0111g0096	1	169	0.0059	8	c.104 others(29): Show c.1042-14003_1042-14002insTATATACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148824060	C C	CCTCTCTC others(1): Show CCTCTCTCT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG01099.hp1 others(29): Show HG00140.hp1 HG00280.hp1 HG01099.hp1 HG01192.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG02055.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02896.hp2 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03225.hp1 HG03486.hp1 HG03540.hp1 HG06807.hp1 HG06807.hp2 NA19079.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005	a0001c0001t0006 a0001c0001t0008 a0001c0001t0011 others(26): Show a0001c0001t0006 a0001c0001t0008 a0001c0001t0011 a0001c0001t0035 a0001c0001t0037 a0001c0001t0046 a0001c0001t0051 a0001c0001t0053 a0001c0001t0056 a0001c0001t0066 a0001c0001t0084 a0001c0001t0098 a0001c0001t0104 a0001c0001t0110 a0001c0002t0019 a0001c0002t0054 a0001c0002t0078 a0001c0002t0082 a0001c0002t0091 a0001c0002t0094 a0001c0002t0101 a0001c0002t0102 a0001c0002t0107 a0001c0003t0026 a0001c0003t0028 a0001c0003t0030 a0001c0003t0079 a0001c0003t0112 a0001c0005t0023	a0001c0001t0006g0144 a0001c0001t0008g0051 a0001c0001t0008g0059 others(29): Show a0001c0001t0006g0144 a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0011g0128 a0001c0001t0035g0078 a0001c0001t0037g0037 a0001c0001t0046g0165 a0001c0001t0051g0069 a0001c0001t0053g0027 a0001c0001t0056g0023 a0001c0001t0066g0015 a0001c0001t0084g0030 a0001c0001t0098g0119 a0001c0001t0104g0049 a0001c0001t0110g0118 a0001c0002t0019g0107 a0001c0002t0019g0123 a0001c0002t0054g0133 a0001c0002t0078g0152 a0001c0002t0082g0016 a0001c0002t0091g0136 a0001c0002t0094g0106 a0001c0002t0101g0160 a0001c0002t0102g0094 a0001c0002t0107g0131 a0001c0003t0026g0157 a0001c0003t0028g0005 a0001c0003t0030g0158 a0001c0003t0079g0161 a0001c0003t0112g0130 a0001c0005t0023g0125	32	169	0.1894	8	c.108 others(29): Show c.1087-13570_1087-13563dupCTCTCTCT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	4/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148839894	G G	GGTGTGTG others(1): Show GGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02615.hp1 HG02486.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0092 a0001c0001t0093 a0001c0001t0092 a0001c0001t0093	a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0092g0008 a0001c0001t0093g0007	2	169	0.0118	8	c.117 others(27): Show c.1173+2196_1173+2203dupGTGTGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148849366	T T	TCCCCCCC others(1): Show TCCCCCCCC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0109 a0001c0003t0109	a0001c0003t0109g0122 a0001c0003t0109g0122	1	169	0.0059	8	c.126 others(27): Show c.1262+5946_1262+5953dupCCCCCCCC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	7/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148894888	G G	GATATATA others(1): Show GATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03041.hp2 HG02258.hp1 HG03041.hp2	a0001 a0001	a0001c0002 a0001c0007 a0001c0002 a0001c0007	a0001c0002t0072 a0001c0007t0080 a0001c0002t0072 a0001c0007t0080	a0001c0002t0072g0018 a0001c0007t0080g0162 a0001c0002t0072g0018 a0001c0007t0080g0162	2	169	0.0118	8	c.135 others(27): Show c.1359+8906_1359+8907insTATATATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148895570	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0019 a0001c0002t0019	a0001c0002t0019g0107 a0001c0002t0019g0107	1	169	0.0059	8	c.136 others(27): Show c.1360-8630_1360-8623dupGTGTGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148911075	T T	TTATATAT others(1): Show TTATATATA	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0023 a0001c0005t0023	a0001c0005t0023g0129 a0001c0005t0023g0129	1	169	0.0059	8	c.139 others(27): Show c.1397+6829_1397+6836dupATATATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	9/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148916196	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA21309.hp1 HG03579.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0039 a0001c0005t0023 a0001c0001t0039 a0001c0005t0023	a0001c0001t0039g0101 a0001c0005t0023g0129 a0001c0001t0039g0101 a0001c0005t0023g0129	2	169	0.0118	8	c.139 others(29): Show c.1397+11962_1397+11969dupTTTTTTTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	9/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148927462	C C	CCTCTCTT others(1): Show CCTCTCTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0109 a0001c0003t0109	a0001c0003t0109g0122 a0001c0003t0109g0122	1	169	0.0059	8	c.139 others(29): Show c.1397+23207_1397+23214dupCTCTTTCT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	9/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148935396	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0072 a0001c0002t0072	a0001c0002t0072g0018 a0001c0002t0072g0018	1	169	0.0059	8	c.139 others(29): Show c.1398-18168_1398-18161dupCACACACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	9/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148953798	A A	AACACACA others(1): Show AACACACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0040 a0001c0002t0040	a0001c0002t0040g0111 a0001c0002t0040g0111	1	169	0.0059	8	c.155 others(23): Show c.1557+67_1557+74dupCACACACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	10/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997284	T T	TACACACA others(1): Show TACACACAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18952.hp1 NA18961.hp1 NA18952.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0073 a0001c0001t0123 a0001c0001t0073 a0001c0001t0123	a0001c0001t0073g0074 a0001c0001t0123g0090 a0001c0001t0073g0074 a0001c0001t0123g0090	2	169	0.0118	8	c.59 others(19): Show c.5961_*5968dupACACACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF3_chr2_99540419_100147590	99575414	A A	ATTTTTTT others(1): Show ATTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01884.hp1 HG02055.hp2 others(7): Show HG00639.hp1 HG01884.hp1 HG02055.hp2 HG02258.hp2 HG02630.hp2 HG02809.hp2 HG02976.hp1 HG02976.hp2 HG03471.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0005 others(3): Show a0001c0001 a0001c0004 a0001c0005 a0001c0008 a0002c0002 a0002c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0031 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0031 a0001c0004t0005 a0001c0005t0005 a0001c0008t0005 a0002c0002t0005 a0002c0002t0018 a0002c0013t0019	a0001c0001t0001g0023 a0001c0001t0004g0041 a0001c0001t0031g0049 others(7): Show a0001c0001t0001g0023 a0001c0001t0004g0041 a0001c0001t0031g0049 a0001c0004t0005g0094 a0001c0005t0005g0092 a0001c0008t0005g0079 a0001c0008t0005g0091 a0002c0002t0005g0029 a0002c0002t0018g0015 a0002c0013t0019g0014	10	100	0.1000	8	c.291 others(27): Show c.2918+2905_2918+2912dupAAAAAAAA	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	18/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99618893	G G	GATTCATT others(1): Show GATTCATTC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00639.hp2 HG01167.hp2 others(33): Show HG00099.hp2 HG00639.hp2 HG01167.hp2 HG01169.hp1 HG01358.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp1 HG02258.hp1 HG02258.hp2 HG02293.hp2 HG02559.hp1 HG02630.hp2 HG02809.hp1 HG02895.hp2 HG02922.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03540.hp1 HG03540.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04199.hp1 HG06807.hp1 NA18906.hp1 NA18906.hp2 NA18971.hp1 NA19043.hp1 NA19043.hp2 NA20129.hp1	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0006	a0001c0001 a0001c0003 a0001c0004 others(6): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0008 a0002c0002 a0002c0007 a0005c0011 a0006c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(24): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0010 a0001c0001t0015 a0001c0001t0016 a0001c0001t0026 a0001c0001t0030 a0001c0001t0031 a0001c0003t0001 a0001c0003t0003 a0001c0003t0006 a0001c0004t0007 a0001c0005t0003 a0001c0005t0009 a0001c0008t0005 a0002c0002t0001 a0002c0002t0002 a0002c0002t0011 a0002c0002t0013 a0002c0007t0001 a0002c0007t0006 a0002c0007t0008 a0005c0011t0009 a0006c0012t0032	a0001c0001t0001g0023 a0001c0001t0001g0051 a0001c0001t0001g0080 others(33): Show a0001c0001t0001g0023 a0001c0001t0001g0051 a0001c0001t0001g0080 a0001c0001t0002g0036 a0001c0001t0004g0041 a0001c0001t0004g0042 a0001c0001t0004g0050 a0001c0001t0004g0082 a0001c0001t0005g0075 a0001c0001t0008g0001 a0001c0001t0010g0057 a0001c0001t0015g0002 a0001c0001t0016g0003 a0001c0001t0026g0056 a0001c0001t0030g0077 a0001c0001t0031g0049 a0001c0003t0001g0066 a0001c0003t0001g0067 a0001c0003t0003g0046 a0001c0003t0006g0063 a0001c0003t0006g0089 a0001c0004t0007g0093 a0001c0004t0007g0095 a0001c0004t0007g0096 a0001c0005t0003g0071 a0001c0005t0009g0016 a0001c0008t0005g0091 a0002c0002t0001g0059 a0002c0002t0002g0028 a0002c0002t0011g0040 a0002c0002t0013g0005 a0002c0007t0001g0060 a0002c0007t0006g0081 a0002c0007t0008g0006 a0005c0011t0009g0012 a0006c0012t0032g0090	36	100	0.3600	8	c.118 others(29): Show c.1185-17280_1185-17273dupGAATGAAT	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99628723	A A	ATTTTTTT others(1): Show ATTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00609.hp1 others(44): Show HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00639.hp2 HG00738.hp1 HG00738.hp2 HG01071.hp2 HG01106.hp1 HG01106.hp2 HG01167.hp1 HG01169.hp2 HG02055.hp2 HG02293.hp1 HG02293.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp1 HG02647.hp2 HG02809.hp1 HG02895.hp1 HG02895.hp2 HG02965.hp2 HG02976.hp2 HG03041.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp2 HG03209.hp2 HG03471.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp1 NA18971.hp1 NA18971.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0006	a0001c0001 a0001c0003 a0001c0004 others(6): Show a0001c0001 a0001c0003 a0001c0004 a0001c0009 a0002c0007 a0003c0006 a0004c0010 a0005c0011 a0006c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(27): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0017 a0001c0001t0022 a0001c0001t0025 a0001c0001t0033 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0034 a0001c0004t0005 a0001c0004t0020 a0001c0009t0021 a0002c0007t0001 a0002c0007t0008 a0003c0006t0001 a0003c0006t0003 a0003c0006t0006 a0004c0010t0005 a0005c0011t0009 a0006c0012t0032	a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0037 others(44): Show a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0037 a0001c0001t0001g0051 a0001c0001t0001g0062 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0003g0048 a0001c0001t0003g0084 a0001c0001t0003g0100 a0001c0001t0004g0042 a0001c0001t0007g0044 a0001c0001t0007g0078 a0001c0001t0008g0009 a0001c0001t0009g0018 a0001c0001t0010g0055 a0001c0001t0011g0088 a0001c0001t0012g0008 a0001c0001t0017g0010 a0001c0001t0022g0019 a0001c0001t0025g0053 a0001c0001t0033g0038 a0001c0003t0001g0065 a0001c0003t0001g0066 a0001c0003t0001g0067 a0001c0003t0001g0073 a0001c0003t0002g0043 a0001c0003t0002g0064 a0001c0003t0003g0026 a0001c0003t0003g0046 a0001c0003t0006g0063 a0001c0003t0006g0089 a0001c0003t0034g0072 a0001c0004t0005g0094 a0001c0004t0020g0011 a0001c0009t0021g0013 a0002c0007t0001g0060 a0002c0007t0008g0006 a0003c0006t0001g0034 a0003c0006t0001g0035 a0003c0006t0001g0068 a0003c0006t0003g0039 a0003c0006t0003g0069 a0003c0006t0006g0052 a0004c0010t0005g0074 a0005c0011t0009g0012 a0006c0012t0032g0090	47	100	0.4700	8	c.118 others(29): Show c.1184+20895_1184+20902dupAAAAAAAA	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99634964	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02055.hp2 HG02523.hp1 others(3): Show HG01169.hp2 HG02055.hp2 HG02523.hp1 HG02895.hp1 HG03209.hp1 HG06807.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0007 a0001c0001 a0001c0004 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0004t0005 a0002c0007t0008	a0001c0001t0001g0080 a0001c0001t0002g0045 a0001c0001t0003g0084 others(3): Show a0001c0001t0001g0080 a0001c0001t0002g0045 a0001c0001t0003g0084 a0001c0001t0007g0078 a0001c0004t0005g0094 a0002c0007t0008g0007	6	100	0.0600	8	c.118 others(29): Show c.1184+14654_1184+14661dupGTGTGTGT	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99648905	A A	ACTCTCTC others(1): Show ACTCTCTCT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01081.hp2 HG01071.hp1 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0032 a0001c0001t0002g0033	2	100	0.0200	8	c.118 others(25): Show c.1184+720_1184+721insAGAGAGAG	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99805813	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01081.hp1 HG01106.hp1 others(8): Show HG00738.hp1 HG01081.hp1 HG01106.hp1 HG02258.hp1 HG02630.hp1 HG03139.hp2 HG03471.hp1 HG03516.hp1 HG04115.hp1 NA20300.hp2 NA20805.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0001c0008 others(2): Show a0001c0001 a0001c0003 a0001c0008 a0002c0002 a0003c0006	a0001c0001t0008 a0001c0001t0012 a0001c0001t0022 others(7): Show a0001c0001t0008 a0001c0001t0012 a0001c0001t0022 a0001c0003t0001 a0001c0003t0002 a0001c0003t0006 a0001c0008t0005 a0002c0002t0002 a0003c0006t0001 a0003c0006t0006	a0001c0001t0008g0009 a0001c0001t0012g0008 a0001c0001t0022g0019 others(8): Show a0001c0001t0008g0009 a0001c0001t0012g0008 a0001c0001t0022g0019 a0001c0003t0001g0065 a0001c0003t0002g0043 a0001c0003t0006g0063 a0001c0008t0005g0079 a0002c0002t0002g0028 a0002c0002t0002g0031 a0003c0006t0001g0035 a0003c0006t0006g0052	11	100	0.1100	8	c.921 others(27): Show c.921+31656_921+31663dupGTGTGTGT	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	8/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99969478	C C	CATTTATT others(1): Show CATTTATTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG06807.hp2 NA18906.hp1 HG01891.hp1 HG06807.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0004 a0001c0001t0008 a0001c0009t0009 a0001c0001t0004 a0001c0001t0008 a0001c0009t0009	a0001c0001t0004g0041 a0001c0001t0008g0001 a0001c0009t0009g0017 a0001c0001t0004g0041 a0001c0001t0008g0001 a0001c0009t0009g0017	3	100	0.0300	8	c.873 others(27): Show c.873+37146_873+37153dupAAATAAAT	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	7/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	100137536	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG03540.hp2 HG06807.hp2 HG00099.hp2 HG03540.hp2 HG06807.hp2	a0001 a0005 a0001 a0005	a0001c0005 a0001c0009 a0005c0011 a0001c0005 a0001c0009 a0005c0011	a0001c0005t0009 a0001c0009t0009 a0005c0011t0009 a0001c0005t0009 a0001c0009t0009 a0005c0011t0009	a0001c0005t0009g0016 a0001c0009t0009g0017 a0005c0011t0009g0012 a0001c0005t0009g0016 a0001c0009t0009g0017 a0005c0011t0009g0012	3	100	0.0300	8	c.-22 others(27): Show c.-228+4940_-228+4947dupGTGTGTGT	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	1/24			chr2	TogoVar
AFF4_chr5_132870395_132968634	132885466	G G	GGGGTGGG others(1): Show GGGGTGGGT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02615.hp2 HG02723.hp1 others(2): Show HG01243.hp1 HG02615.hp2 HG02723.hp1 HG02818.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0262 a0001c0001t0009g0263 a0001c0001t0009g0264 others(2): Show a0001c0001t0009g0262 a0001c0001t0009g0263 a0001c0001t0009g0264 a0001c0001t0009g0265 a0001c0001t0009g0266	5	392	0.0128	8	c.310 others(25): Show c.3100-355_3100-348dupACCCACCC	AFF4	ENSG00000072364.13	transcript	ENST00000265343.10	protein_coding	18/20			chr5	TogoVar

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