Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Select column to sort.

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
HIVEP2_chr6_142746469_142950176	142793659	T T	TCTTTCTT others(2): Show TCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00733.hp1 HG00733.hp2 others(31): Show HG00438.hp2 HG00733.hp1 HG00733.hp2 HG01070.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01257.hp2 HG01358.hp1 HG01361.hp1 HG01975.hp2 HG01981.hp1 HG02165.hp1 HG02559.hp2 HG02698.hp2 HG02723.hp2 HG02818.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG04115.hp2 NA18948.hp1 NA18979.hp2 NA18984.hp1 NA18990.hp2 NA19007.hp1 NA19030.hp2 NA19070.hp1 NA19070.hp2 NA19077.hp2 NA20905.hp1	a0001 a0010 a0001 a0010	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0008 a0001c0009 a0001c0015 a0001c0016 a0001c0022 a0001c0038 a0010c0034	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(11): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0003t0004 a0001c0006t0001 a0001c0006t0016 a0001c0008t0002 a0001c0009t0002 a0001c0015t0001 a0001c0016t0001 a0001c0022t0001 a0001c0038t0002 a0010c0034t0001	a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0033 others(31): Show a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0066 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0093 a0001c0001t0001g0097 a0001c0001t0001g0155 a0001c0001t0001g0164 a0001c0001t0001g0169 a0001c0001t0001g0172 a0001c0001t0001g0213 a0001c0001t0001g0250 a0001c0001t0001g0257 a0001c0001t0001g0261 a0001c0002t0001g0041 a0001c0002t0002g0083 a0001c0002t0002g0118 a0001c0002t0002g0136 a0001c0002t0002g0237 a0001c0003t0001g0023 a0001c0003t0004g0030 a0001c0006t0001g0180 a0001c0006t0016g0062 a0001c0008t0002g0099 a0001c0008t0002g0100 a0001c0008t0002g0171 a0001c0009t0002g0078 a0001c0015t0001g0265 a0001c0016t0001g0060 a0001c0022t0001g0258 a0001c0038t0002g0191 a0010c0034t0001g0188	34	288	0.1181	9	c.-52 others(30): Show c.-527-10045_-527-10044insGAAAGAAAG	HIVEP2	ENSG00000010818.11	transcript	ENST00000367603.8	protein_coding	2/9			chr6	TogoVar
HIVEP2_chr6_142746469_142950176	142818707	G G	GAAAGAAA others(2): Show GAAAGAAAGA	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01081.hp1 HG01257.hp2 others(13): Show HG00673.hp2 HG01081.hp1 HG01257.hp2 HG01884.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03540.hp1 HG04115.hp1 NA18522.hp1 NA18942.hp1 NA18946.hp1 NA18979.hp1 NA18990.hp1 NA19056.hp1 NA19076.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0004 others(6): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007 a0001c0009 a0001c0024 a0002c0010 a0005c0019	a0001c0001t0001 a0001c0001t0004 a0001c0002t0002 others(8): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0002 a0001c0004t0001 a0001c0005t0003 a0001c0005t0005 a0001c0007t0001 a0001c0009t0002 a0001c0024t0003 a0002c0010t0015 a0005c0019t0001	a0001c0001t0001g0098 a0001c0001t0001g0110 a0001c0001t0001g0194 others(13): Show a0001c0001t0001g0098 a0001c0001t0001g0110 a0001c0001t0001g0194 a0001c0001t0004g0284 a0001c0002t0002g0079 a0001c0002t0002g0246 a0001c0004t0001g0025 a0001c0005t0003g0262 a0001c0005t0005g0113 a0001c0005t0005g0281 a0001c0007t0001g0182 a0001c0007t0001g0234 a0001c0009t0002g0078 a0001c0024t0003g0285 a0002c0010t0015g0227 a0005c0019t0001g0019	16	288	0.0556	9	c.-52 others(30): Show c.-528+18219_-528+18227dupTCTTTCTTT	HIVEP2	ENSG00000010818.11	transcript	ENST00000367603.8	protein_coding	2/9			chr6	TogoVar
HIVEP2_chr6_142746469_142950176	142940667	T T	TATTTATA others(2): Show TATTTATACC	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02451.hp1 HG02809.hp2 others(1): Show HG01433.hp2 HG02451.hp1 HG02809.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0014 a0001c0015 a0001c0001 a0001c0014 a0001c0015	a0001c0001t0001 a0001c0001t0011 a0001c0014t0001 others(1): Show a0001c0001t0001 a0001c0001t0011 a0001c0014t0001 a0001c0015t0004	a0001c0001t0001g0200 a0001c0001t0011g0107 a0001c0014t0001g0201 others(1): Show a0001c0001t0001g0200 a0001c0001t0011g0107 a0001c0014t0001g0201 a0001c0015t0004g0108	4	288	0.0139	9	c.-64 others(28): Show c.-641+4423_-641+4431dupGGTATAAAT	HIVEP2	ENSG00000010818.11	transcript	ENST00000367603.8	protein_coding	1/9			chr6	TogoVar
HIVEP3_chr1_41501365_41923922	41538792	A A	ACCCAGAA others(2): Show ACCCAGAAGC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00280.hp1 others(91): Show HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00408.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00673.hp2 HG01106.hp1 HG01106.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01358.hp1 HG01433.hp2 HG02004.hp1 HG02040.hp1 HG02056.hp2 HG02145.hp1 HG02145.hp2 HG02258.hp1 HG02258.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02647.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02895.hp2 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18945.hp1 NA18946.hp1 NA18950.hp1 NA18974.hp2 NA18986.hp1 NA18986.hp2 NA19003.hp1 NA19003.hp2 NA19043.hp1 NA19043.hp2 NA19057.hp2 NA19084.hp2 NA20129.hp1 NA21309.hp2	a0001 a0002 a0003 others(22): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0009 a0010 a0011 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0022 a0025 a0026 a0027 a0028 a0029 a0031 a0033	a0001c0001 a0001c0003 a0001c0004 others(29): Show a0001c0001 a0001c0003 a0001c0004 a0001c0011 a0001c0044 a0002c0002 a0003c0006 a0003c0038 a0004c0007 a0004c0018 a0005c0005 a0006c0012 a0008c0010 a0009c0009 a0010c0014 a0011c0021 a0011c0022 a0013c0015 a0014c0017 a0015c0013 a0016c0023 a0017c0025 a0018c0024 a0019c0020 a0022c0039 a0025c0043 a0026c0033 a0027c0026 a0028c0035 a0029c0041 a0031c0036 a0033c0019	a0001c0001t0068 a0001c0001t0078 a0001c0003t0002 others(76): Show a0001c0001t0068 a0001c0001t0078 a0001c0003t0002 a0001c0003t0028 a0001c0003t0031 a0001c0003t0034 a0001c0003t0036 a0001c0003t0038 a0001c0003t0044 a0001c0004t0006 a0001c0004t0007 a0001c0004t0012 a0001c0004t0081 a0001c0004t0082 a0001c0004t0084 a0001c0004t0085 a0001c0011t0004 a0001c0011t0021 a0001c0044t0024 a0002c0002t0002 a0002c0002t0003 a0002c0002t0008 a0002c0002t0011 a0002c0002t0013 a0002c0002t0022 a0002c0002t0023 a0002c0002t0026 a0002c0002t0029 a0002c0002t0032 a0002c0002t0033 a0002c0002t0035 a0002c0002t0037 a0002c0002t0045 a0002c0002t0056 a0002c0002t0062 a0002c0002t0063 a0002c0002t0065 a0002c0002t0067 a0003c0006t0030 a0003c0006t0041 a0003c0006t0057 a0003c0006t0058 a0003c0038t0059 a0004c0007t0006 a0004c0007t0009 a0004c0018t0009 a0005c0005t0001 a0005c0005t0017 a0005c0005t0020 a0005c0005t0066 a0005c0005t0070 a0006c0012t0010 a0006c0012t0042 a0006c0012t0050 a0008c0010t0004 a0008c0010t0047 a0008c0010t0049 a0009c0009t0016 a0009c0009t0046 a0010c0014t0040 a0010c0014t0079 a0011c0021t0004 a0011c0022t0015 a0013c0015t0014 a0014c0017t0052 a0014c0017t0053 a0015c0013t0005 a0016c0023t0010 a0017c0025t0069 a0018c0024t0051 a0019c0020t0008 a0022c0039t0039 a0025c0043t0055 a0026c0033t0011 a0027c0026t0054 a0028c0035t0019 a0029c0041t0027 a0031c0036t0048 a0033c0019t0015	a0001c0001t0068g0124 a0001c0001t0078g0004 a0001c0003t0002g0009 others(91): Show a0001c0001t0068g0124 a0001c0001t0078g0004 a0001c0003t0002g0009 a0001c0003t0002g0031 a0001c0003t0002g0066 a0001c0003t0002g0110 a0001c0003t0002g0133 a0001c0003t0028g0029 a0001c0003t0031g0065 a0001c0003t0034g0107 a0001c0003t0036g0112 a0001c0003t0038g0097 a0001c0003t0044g0030 a0001c0004t0006g0088 a0001c0004t0007g0087 a0001c0004t0012g0108 a0001c0004t0012g0113 a0001c0004t0081g0104 a0001c0004t0082g0129 a0001c0004t0084g0105 a0001c0004t0085g0128 a0001c0011t0004g0033 a0001c0011t0004g0041 a0001c0011t0021g0040 a0001c0044t0024g0042 a0002c0002t0002g0114 a0002c0002t0002g0126 a0002c0002t0003g0048 a0002c0002t0008g0017 a0002c0002t0008g0127 a0002c0002t0011g0121 a0002c0002t0013g0099 a0002c0002t0013g0115 a0002c0002t0022g0084 a0002c0002t0023g0046 a0002c0002t0026g0100 a0002c0002t0029g0059 a0002c0002t0032g0103 a0002c0002t0033g0132 a0002c0002t0035g0123 a0002c0002t0037g0094 a0002c0002t0045g0015 a0002c0002t0056g0134 a0002c0002t0062g0014 a0002c0002t0063g0022 a0002c0002t0065g0089 a0002c0002t0067g0049 a0003c0006t0030g0045 a0003c0006t0041g0091 a0003c0006t0057g0023 a0003c0006t0058g0021 a0003c0038t0059g0080 a0004c0007t0006g0036 a0004c0007t0006g0050 a0004c0007t0006g0051 a0004c0007t0009g0085 a0004c0018t0009g0056 a0004c0018t0009g0058 a0005c0005t0001g0007 a0005c0005t0017g0012 a0005c0005t0020g0001 a0005c0005t0066g0016 a0005c0005t0070g0060 a0006c0012t0010g0037 a0006c0012t0042g0052 a0006c0012t0050g0003 a0008c0010t0004g0038 a0008c0010t0047g0027 a0008c0010t0049g0028 a0009c0009t0016g0079 a0009c0009t0016g0082 a0009c0009t0046g0086 a0010c0014t0040g0075 a0010c0014t0079g0053 a0011c0021t0004g0074 a0011c0022t0015g0068 a0013c0015t0014g0024 a0013c0015t0014g0032 a0014c0017t0052g0034 a0014c0017t0053g0043 a0015c0013t0005g0002 a0015c0013t0005g0039 a0016c0023t0010g0081 a0017c0025t0069g0025 a0018c0024t0051g0064 a0019c0020t0008g0070 a0022c0039t0039g0008 a0025c0043t0055g0044 a0026c0033t0011g0095 a0027c0026t0054g0076 a0028c0035t0019g0026 a0029c0041t0027g0005 a0031c0036t0048g0119 a0033c0019t0015g0057	94	134	0.7015	9	c.520 others(30): Show c.5208-13883_5208-13882insGCTTCTGGG	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	5/8			chr1	TogoVar
HIVEP3_chr1_41501365_41923922	41544847	C C	CATCACCT others(2): Show CATCACCTCT	intron_variant intron_variant	MODIFIER	HG01261.hp1 NA19076.hp1 HG01261.hp1 NA19076.hp1	a0001 a0003 a0001 a0003	a0001c0028 a0003c0029 a0001c0028 a0003c0029	a0001c0028t0080 a0003c0029t0061 a0001c0028t0080 a0003c0029t0061	a0001c0028t0080g0063 a0003c0029t0061g0071 a0001c0028t0080g0063 a0003c0029t0061g0071	2	134	0.0149	9	c.520 others(30): Show c.5208-19938_5208-19937insAGAGGTGAT	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	5/8			chr1	TogoVar
HIVEP3_chr1_41501365_41923922	41544964	C C	CATCACTA others(2): Show CATCACTACT	intron_variant intron_variant	MODIFIER	HG00140.hp2 NA21309.hp1 HG00140.hp2 NA21309.hp1	a0001 a0023 a0001 a0023	a0001c0003 a0023c0027 a0001c0003 a0023c0027	a0001c0003t0031 a0023c0027t0003 a0001c0003t0031 a0023c0027t0003	a0001c0003t0031g0065 a0023c0027t0003g0077 a0001c0003t0031g0065 a0023c0027t0003g0077	2	134	0.0149	9	c.520 others(30): Show c.5208-20055_5208-20054insAGTAGTGAT	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	5/8			chr1	TogoVar
HIVEP3_chr1_41501365_41923922	41638256	G G	GAGAAAGA others(2): Show GAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00621.hp2 HG00639.hp2 others(27): Show HG00408.hp2 HG00621.hp2 HG00639.hp2 HG00673.hp1 HG01109.hp2 HG01243.hp2 HG01255.hp2 HG01261.hp1 HG01261.hp2 HG01358.hp2 HG01496.hp2 HG02040.hp2 HG02056.hp1 HG02056.hp2 HG02451.hp1 HG03139.hp2 HG03195.hp1 HG03540.hp1 HG03579.hp1 NA18945.hp2 NA18946.hp2 NA18961.hp1 NA18961.hp2 NA18974.hp1 NA18986.hp2 NA19003.hp2 NA19057.hp2 NA19076.hp1 NA19076.hp2 NA19084.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0009 a0020 a0030	a0001c0001 a0001c0028 a0001c0032 others(5): Show a0001c0001 a0001c0028 a0001c0032 a0002c0002 a0003c0029 a0009c0009 a0020c0042 a0030c0034	a0001c0001t0001 a0001c0001t0012 a0001c0001t0017 others(20): Show a0001c0001t0001 a0001c0001t0012 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0060 a0001c0001t0064 a0001c0001t0072 a0001c0001t0076 a0001c0001t0077 a0001c0001t0078 a0001c0001t0083 a0001c0028t0080 a0001c0032t0075 a0002c0002t0011 a0002c0002t0029 a0002c0002t0032 a0002c0002t0033 a0002c0002t0063 a0003c0029t0061 a0009c0009t0046 a0020c0042t0086 a0030c0034t0011	a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0019 others(27): Show a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0062 a0001c0001t0001g0093 a0001c0001t0001g0109 a0001c0001t0001g0122 a0001c0001t0001g0125 a0001c0001t0012g0010 a0001c0001t0017g0118 a0001c0001t0018g0120 a0001c0001t0019g0096 a0001c0001t0060g0054 a0001c0001t0064g0111 a0001c0001t0072g0006 a0001c0001t0076g0098 a0001c0001t0077g0131 a0001c0001t0078g0004 a0001c0001t0083g0072 a0001c0028t0080g0063 a0001c0032t0075g0069 a0002c0002t0011g0121 a0002c0002t0029g0059 a0002c0002t0032g0103 a0002c0002t0033g0132 a0002c0002t0063g0022 a0003c0029t0061g0071 a0009c0009t0046g0086 a0020c0042t0086g0047 a0030c0034t0011g0101	30	134	0.2239	9	c.-72 others(28): Show c.-720-9318_-720-9310dupTTTCTTTCT	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	2/8			chr1	TogoVar
HIVEP3_chr1_41501365_41923922	41757091	A A	AATTATTA others(2): Show AATTATTATT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00621.hp2 HG00639.hp2 others(27): Show HG00280.hp1 HG00621.hp2 HG00639.hp2 HG01109.hp1 HG01261.hp2 HG01358.hp1 HG01496.hp1 HG02004.hp2 HG02040.hp1 HG02145.hp1 HG02145.hp2 HG02615.hp2 HG02622.hp2 HG02735.hp2 HG02809.hp1 HG02896.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp2 HG04204.hp2 NA18522.hp1 NA18942.hp2 NA18945.hp2 NA18950.hp2 NA18961.hp2 NA18974.hp2 NA19003.hp1 NA19076.hp2 NA20129.hp1	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0014 a0022 a0027	a0001c0001 a0001c0003 a0001c0011 others(11): Show a0001c0001 a0001c0003 a0001c0011 a0001c0044 a0002c0002 a0003c0006 a0004c0007 a0005c0005 a0006c0012 a0007c0008 a0008c0010 a0014c0017 a0022c0039 a0027c0026	a0001c0001t0001 a0001c0001t0012 a0001c0001t0064 others(24): Show a0001c0001t0001 a0001c0001t0012 a0001c0001t0064 a0001c0001t0068 a0001c0001t0073 a0001c0001t0074 a0001c0001t0077 a0001c0003t0002 a0001c0003t0028 a0001c0011t0021 a0001c0044t0024 a0002c0002t0002 a0002c0002t0003 a0002c0002t0008 a0002c0002t0013 a0002c0002t0037 a0002c0002t0056 a0003c0006t0030 a0004c0007t0006 a0005c0005t0017 a0006c0012t0010 a0007c0008t0007 a0008c0010t0004 a0014c0017t0052 a0014c0017t0053 a0022c0039t0039 a0027c0026t0054	a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0122 others(27): Show a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0122 a0001c0001t0012g0010 a0001c0001t0064g0111 a0001c0001t0068g0124 a0001c0001t0073g0116 a0001c0001t0074g0106 a0001c0001t0077g0131 a0001c0003t0002g0110 a0001c0003t0028g0029 a0001c0011t0021g0040 a0001c0044t0024g0042 a0002c0002t0002g0114 a0002c0002t0003g0048 a0002c0002t0008g0127 a0002c0002t0013g0099 a0002c0002t0037g0094 a0002c0002t0056g0134 a0003c0006t0030g0045 a0004c0007t0006g0051 a0005c0005t0017g0012 a0006c0012t0010g0037 a0007c0008t0007g0020 a0007c0008t0007g0061 a0008c0010t0004g0038 a0014c0017t0052g0034 a0014c0017t0053g0043 a0022c0039t0039g0008 a0027c0026t0054g0076	30	134	0.2239	9	c.-80 others(30): Show c.-800-56105_-800-56097dupAATAATAAT	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	1/8			chr1	TogoVar
HK1_chr10_69273496_69406882	69283808	A A	AAAAAAAA others(2): Show AAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00609.hp2 HG00639.hp1 others(36): Show HG00408.hp1 HG00609.hp2 HG00639.hp1 HG01070.hp2 HG01109.hp2 HG01515.hp1 HG02055.hp2 HG02080.hp1 HG02132.hp2 HG02145.hp2 HG02257.hp1 HG02572.hp1 HG02622.hp2 HG02809.hp1 HG02818.hp1 HG02922.hp1 HG02965.hp2 HG02976.hp2 HG03041.hp2 HG03098.hp2 HG03225.hp2 HG03239.hp2 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03831.hp1 NA18948.hp1 NA18948.hp2 NA18962.hp1 NA18966.hp1 NA18975.hp1 NA19002.hp2 NA19030.hp2 NA19091.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0010 a0001c0011 a0001c0013 a0001c0014 a0001c0019	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(16): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0002t0004 a0001c0003t0001 a0001c0003t0004 a0001c0004t0001 a0001c0004t0004 a0001c0005t0001 a0001c0005t0004 a0001c0005t0015 a0001c0005t0023 a0001c0006t0005 a0001c0007t0003 a0001c0010t0006 a0001c0011t0005 a0001c0013t0003 a0001c0014t0005 a0001c0019t0009	a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0255 others(36): Show a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0255 a0001c0001t0001g0259 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0267 a0001c0001t0001g0269 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0004g0019 a0001c0002t0001g0260 a0001c0002t0001g0261 a0001c0002t0001g0265 a0001c0002t0001g0266 a0001c0002t0001g0270 a0001c0002t0001g0271 a0001c0002t0001g0272 a0001c0002t0004g0011 a0001c0003t0001g0256 a0001c0003t0004g0018 a0001c0004t0001g0268 a0001c0004t0004g0008 a0001c0005t0001g0248 a0001c0005t0001g0252 a0001c0005t0001g0253 a0001c0005t0004g0013 a0001c0005t0015g0012 a0001c0005t0023g0017 a0001c0006t0005g0009 a0001c0006t0005g0010 a0001c0007t0003g0258 a0001c0010t0006g0254 a0001c0011t0005g0014 a0001c0011t0005g0016 a0001c0013t0003g0257 a0001c0014t0005g0015 a0001c0019t0009g0251	39	280	0.1393	9	c.-74 others(26): Show c.-74+1166_-74+1167insGAAAAAAAA	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding	2/20		INFO_REALIGN_3_PRIME	chr10	TogoVar
HK1_chr10_69273496_69406882	69329160	T T	TTTCTTCT others(2): Show TTTCTTCTTC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01243.hp1 HG02280.hp2 others(16): Show HG00639.hp1 HG01243.hp1 HG02280.hp2 HG02451.hp2 HG02559.hp2 HG02615.hp2 HG02647.hp1 HG02717.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03209.hp2 HG03540.hp1 HG03927.hp2 HG06807.hp1 NA18906.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0008 a0001c0010 a0001c0013 a0001c0020 a0001c0025 a0001c0026 a0002c0016	a0001c0001t0001 a0001c0001t0015 a0001c0001t0016 others(12): Show a0001c0001t0001 a0001c0001t0015 a0001c0001t0016 a0001c0002t0002 a0001c0002t0011 a0001c0003t0001 a0001c0003t0008 a0001c0005t0011 a0001c0008t0002 a0001c0010t0006 a0001c0013t0003 a0001c0020t0025 a0001c0025t0022 a0001c0026t0002 a0002c0016t0001	a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0001t0015g0007 others(16): Show a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0001t0015g0007 a0001c0001t0016g0125 a0001c0002t0002g0094 a0001c0002t0011g0027 a0001c0002t0011g0029 a0001c0003t0001g0229 a0001c0003t0001g0256 a0001c0003t0008g0030 a0001c0005t0011g0026 a0001c0008t0002g0072 a0001c0010t0006g0181 a0001c0010t0006g0254 a0001c0013t0003g0230 a0001c0020t0025g0028 a0001c0025t0022g0039 a0001c0026t0002g0079 a0002c0016t0001g0246	19	280	0.0679	9	c.76- others(26): Show c.76-14664_76-14656dupCTTCTTCTT	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr10	TogoVar
HK1_chr10_69313847_69406882	69329160	T T	TTTCTTCT others(2): Show TTTCTTCTTC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01243.hp1 HG02280.hp1 others(18): Show HG00639.hp1 HG01243.hp1 HG02280.hp1 HG02451.hp1 HG02559.hp2 HG02615.hp2 HG02647.hp2 HG02717.hp1 HG02922.hp2 HG02970.hp1 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03209.hp2 HG03540.hp2 HG03579.hp1 HG03927.hp1 HG06807.hp1 NA18906.hp2 NA19074.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0007 a0001c0009 a0001c0012 a0001c0014 a0001c0020 a0001c0026 a0001c0027	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0001c0002t0004 a0001c0003t0001 a0001c0003t0004 a0001c0005t0001 a0001c0007t0001 a0001c0009t0002 a0001c0012t0005 a0001c0012t0009 a0001c0014t0002 a0001c0020t0005 a0001c0026t0012 a0001c0027t0004	a0001c0001t0001g0163 a0001c0001t0001g0165 a0001c0001t0001g0210 others(17): Show a0001c0001t0001g0163 a0001c0001t0001g0165 a0001c0001t0001g0210 a0001c0001t0003g0147 a0001c0001t0003g0215 a0001c0002t0001g0001 a0001c0002t0004g0060 a0001c0003t0001g0041 a0001c0003t0001g0043 a0001c0003t0001g0216 a0001c0003t0004g0063 a0001c0005t0001g0053 a0001c0007t0001g0042 a0001c0009t0002g0088 a0001c0012t0005g0055 a0001c0012t0009g0061 a0001c0014t0002g0208 a0001c0020t0005g0164 a0001c0026t0012g0087 a0001c0027t0004g0059	21	296	0.0710	9	c.63+ others(26): Show c.63+10153_63+10161dupCTTCTTCTT	HK1	ENSG00000156515.25	transcript	ENST00000359426.7	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr10	TogoVar
HK2_chr2_74829127_74898359	74831203	A A	ATTTTTTT others(2): Show ATTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG01169.hp1 HG01257.hp2 others(9): Show HG00323.hp2 HG01169.hp1 HG01257.hp2 HG01891.hp1 HG02145.hp1 HG02615.hp1 HG02886.hp2 HG02965.hp2 HG03490.hp2 HG03516.hp1 HG03516.hp2 NA18946.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0014	a0001c0001 a0001c0006 a0001c0011 others(5): Show a0001c0001 a0001c0006 a0001c0011 a0002c0004 a0002c0007 a0002c0026 a0004c0008 a0014c0027	a0001c0001t0007 a0001c0006t0007 a0001c0006t0008 others(9): Show a0001c0001t0007 a0001c0006t0007 a0001c0006t0008 a0001c0006t0021 a0001c0011t0020 a0002c0004t0009 a0002c0004t0023 a0002c0007t0010 a0002c0007t0016 a0002c0026t0013 a0004c0008t0010 a0014c0027t0039	a0001c0001t0007g0249 a0001c0006t0007g0327 a0001c0006t0008g0251 others(9): Show a0001c0001t0007g0249 a0001c0006t0007g0327 a0001c0006t0008g0251 a0001c0006t0021g0109 a0001c0011t0020g0345 a0002c0004t0009g0337 a0002c0004t0023g0243 a0002c0007t0010g0248 a0002c0007t0016g0123 a0002c0026t0013g0257 a0004c0008t0010g0347 a0014c0027t0039g0382	12	394	0.0305	9	c.-33 others(20): Show c.-3378_-3377insTTTTTTTTT	HK2	ENSG00000159399.10	transcript	ENST00000290573.7	protein_coding		2923		chr2	TogoVar
HKDC1_chr10_69215332_69272552	69245570	C C	CAATAATA others(2): Show CAATAATAAT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01358.hp2 HG02486.hp1 others(4): Show HG01069.hp2 HG01358.hp2 HG02486.hp1 HG02622.hp1 HG04199.hp2 NA18982.hp2 NA19090.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0010	a0001c0003 a0002c0007 a0003c0001 others(2): Show a0001c0003 a0002c0007 a0003c0001 a0004c0004 a0010c0020	a0001c0003t0001 a0002c0007t0001 a0003c0001t0001 others(2): Show a0001c0003t0001 a0002c0007t0001 a0003c0001t0001 a0004c0004t0001 a0010c0020t0001	a0001c0003t0001g0232 a0002c0007t0001g0249 a0003c0001t0001g0102 others(4): Show a0001c0003t0001g0232 a0002c0007t0001g0249 a0003c0001t0001g0102 a0003c0001t0001g0173 a0004c0004t0001g0214 a0004c0004t0001g0310 a0010c0020t0001g0157	7	380	0.0184	9	c.876 others(24): Show c.876-478_876-470dupAATAATAAT	HKDC1	ENSG00000156510.13	transcript	ENST00000354624.6	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr10	TogoVar
HLA-DQA1_chr6_32632406_32648684	32634232	C C	CAAAAAAA others(2): Show CAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01175.hp1 HG01256.hp1 HG01891.hp2 others(3): Show HG01175.hp1 HG01256.hp1 HG01891.hp2 HG03195.hp1 NA18962.hp1 NA19001.hp2	a0003 a0003	a0003c0004 a0003c0006 a0003c0004 a0003c0006	a0003c0004t0004 a0003c0006t0004 a0003c0004t0004 a0003c0006t0004	a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011 a0003c0004t0004g0008 a0003c0004t0004g0018 a0003c0006t0004g0011	6	86	0.0698	9	c.-32 others(20): Show c.-3227_-3226insAAAAAAAAA	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding		3173		chr6	TogoVar
HLA-DQA2_chr6_32736391_32752198	32737756	C C	CTCTTTTC others(2): Show CTCTTTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00609.hp2 HG00642.hp2 others(23): Show HG00140.hp2 HG00609.hp2 HG00642.hp2 HG00733.hp1 HG01069.hp1 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01257.hp1 HG01361.hp1 HG01361.hp2 HG01516.hp1 HG01517.hp2 HG02080.hp1 HG02148.hp2 HG02647.hp2 HG02735.hp1 HG02738.hp2 HG02970.hp2 HG03471.hp1 HG03491.hp2 HG03492.hp1	a0001 a0003 a0001 a0003	a0001c0004 a0003c0005 a0001c0004 a0003c0005	a0001c0004t0011 a0003c0005t0009 a0003c0005t0016 a0001c0004t0011 a0003c0005t0009 a0003c0005t0016	a0001c0004t0011g0015 a0003c0005t0009g0016 a0003c0005t0009g0019 others(3): Show a0001c0004t0011g0015 a0003c0005t0009g0016 a0003c0005t0009g0019 a0003c0005t0009g0050 a0003c0005t0016g0016 a0003c0005t0016g0019	26	455	0.0571	9	c.-36 others(20): Show c.-3688_-3687insTCTTTTCTT	HLA-DQA2	ENSG00000237541.4	transcript	ENST00000374940.4	protein_coding		3634		chr6	TogoVar
HLA-DQB1_chr6_32654467_32671657	32664078	T T	TTACCTCT others(2): Show TTACCTCTGG	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp1 HG00597.hp1 others(60): Show HG00099.hp1 HG00280.hp1 HG00597.hp1 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00673.hp2 HG00733.hp1 HG00741.hp2 HG01081.hp2 HG01106.hp1 HG01346.hp2 HG01515.hp2 HG01884.hp2 HG01952.hp2 HG01978.hp2 HG01993.hp2 HG02055.hp1 HG02055.hp2 HG02071.hp1 HG02071.hp2 HG02083.hp2 HG02109.hp1 HG02148.hp1 HG02257.hp2 HG02273.hp2 HG02280.hp2 HG02559.hp1 HG02809.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG03041.hp2 HG03139.hp2 HG03540.hp2 NA18522.hp2 NA18942.hp2 NA18951.hp1 NA18968.hp2 NA18970.hp2 NA18973.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18987.hp2 NA18988.hp2 NA18995.hp2 NA19004.hp2 NA19056.hp2 NA19060.hp2 NA19064.hp2 NA19083.hp2 NA19084.hp2 NA19088.hp2 NA19240.hp2 NA20129.hp1 NA20752.hp2 NA20805.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0002 a0012 a0016 a0002 a0012 a0016	a0002c0002 a0002c0017 a0012c0012 others(1): Show a0002c0002 a0002c0017 a0012c0012 a0016c0018	a0002c0002t0002 a0002c0017t0002 a0012c0012t0002 others(2): Show a0002c0002t0002 a0002c0017t0002 a0012c0012t0002 a0012c0012t0018 a0016c0018t0002	a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0024 others(12): Show a0002c0002t0002g0007 a0002c0002t0002g0010 a0002c0002t0002g0024 a0002c0002t0002g0025 a0002c0002t0002g0031 a0002c0002t0002g0032 a0002c0002t0002g0040 a0002c0002t0002g0041 a0002c0002t0002g0043 a0002c0002t0002g0044 a0002c0002t0002g0046 a0002c0017t0002g0045 a0012c0012t0002g0012 a0012c0012t0018g0039 a0016c0018t0002g0042	63	402	0.1567	9	c.379 others(24): Show c.379+719_379+720insCCAGAGGTA	HLA-DQB1	ENSG00000179344.17	transcript	ENST00000434651.7	protein_coding	2/4			chr6	TogoVar
HLA-DRA_chr6_32434887_32450046	32435620	A A	ACACACAC others(2): Show ACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG00438.hp2 HG00642.hp2 others(82): Show HG00408.hp1 HG00438.hp2 HG00642.hp2 HG00673.hp1 HG00733.hp1 HG00735.hp2 HG01070.hp2 HG01071.hp2 HG01106.hp2 HG01123.hp1 HG01243.hp1 HG01255.hp2 HG01257.hp1 HG01358.hp1 HG01361.hp1 HG01884.hp1 HG01978.hp1 HG01993.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02145.hp2 HG02148.hp1 HG02165.hp1 HG02572.hp2 HG02602.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG03225.hp2 HG03453.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp2 HG03710.hp2 HG03927.hp1 HG06807.hp2 NA18522.hp2 NA18747.hp2 NA18906.hp2 NA18941.hp2 NA18944.hp1 NA18945.hp1 NA18951.hp2 NA18955.hp1 NA18963.hp1 NA18967.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18977.hp2 NA18978.hp1 NA18980.hp1 NA18984.hp1 NA18986.hp1 NA18987.hp1 NA18990.hp2 NA18992.hp2 NA19002.hp1 NA19003.hp1 NA19004.hp1 NA19006.hp2 NA19009.hp1 NA19030.hp2 NA19054.hp1 NA19055.hp2 NA19060.hp1 NA19062.hp2 NA19079.hp2 NA19083.hp1 NA19084.hp1 NA19085.hp2 NA19087.hp1 NA19240.hp1 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0008 a0001c0001t0009 others(2): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0009 a0002c0002t0002 a0002c0002t0004	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 others(13): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0008g0006 a0001c0001t0009g0002 a0002c0002t0002g0003 a0002c0002t0002g0026 a0002c0002t0002g0033 a0002c0002t0004g0018	85	459	0.1852	9	c.-43 others(20): Show c.-4331_-4330insCACACACAC	HLA-DRA	ENSG00000204287.14	transcript	ENST00000395388.7	protein_coding		4266		chr6	TogoVar
HLA-DRB1_chr6_32573775_32594848	32578722	T T	TCCCTTTT others(2): Show TCCCTTTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(105): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00733.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02071.hp1 HG02071.hp2 HG02109.hp1 HG02129.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02486.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03654.hp1 HG03654.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18955.hp1 NA18968.hp2 NA18969.hp2 NA18980.hp1 NA18984.hp2 NA18992.hp1 NA18995.hp1 NA18995.hp2 NA19002.hp1 NA19004.hp1 NA19005.hp2 NA19006.hp1 NA19009.hp2 NA19030.hp1 NA19030.hp2 NA19055.hp2 NA19056.hp1 NA19060.hp1 NA19060.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19085.hp2 NA19089.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA21309.hp1	a0002 a0003 a0005 others(15): Show a0002 a0003 a0005 a0006 a0012 a0014 a0015 a0018 a0019 a0021 a0022 a0023 a0024 a0025 a0027 a0030 a0031 a0032	a0002c0003 a0003c0002 a0005c0008 others(16): Show a0002c0003 a0003c0002 a0005c0008 a0005c0010 a0006c0005 a0012c0013 a0014c0015 a0015c0016 a0018c0018 a0019c0020 a0021c0023 a0022c0022 a0023c0024 a0024c0027 a0025c0026 a0027c0030 a0030c0035 a0031c0034 a0032c0033	a0002c0003t0002 a0003c0002t0005 a0005c0008t0006 others(17): Show a0002c0003t0002 a0003c0002t0005 a0005c0008t0006 a0005c0010t0009 a0006c0005t0002 a0012c0013t0011 a0014c0015t0008 a0015c0016t0010 a0015c0016t0012 a0018c0018t0008 a0019c0020t0010 a0021c0023t0006 a0022c0022t0012 a0023c0024t0010 a0024c0027t0006 a0025c0026t0006 a0027c0030t0011 a0030c0035t0009 a0031c0034t0006 a0032c0033t0011	a0002c0003t0002g0008 a0002c0003t0002g0020 a0002c0003t0002g0021 others(66): Show a0002c0003t0002g0008 a0002c0003t0002g0020 a0002c0003t0002g0021 a0002c0003t0002g0022 a0002c0003t0002g0023 a0002c0003t0002g0044 a0002c0003t0002g0045 a0002c0003t0002g0046 a0002c0003t0002g0047 a0002c0003t0002g0048 a0002c0003t0002g0049 a0003c0002t0005g0005 a0003c0002t0005g0010 a0003c0002t0005g0014 a0003c0002t0005g0077 a0003c0002t0005g0078 a0003c0002t0005g0079 a0005c0008t0006g0024 a0005c0008t0006g0025 a0005c0008t0006g0026 a0005c0008t0006g0054 a0005c0008t0006g0056 a0005c0008t0006g0057 a0005c0010t0009g0027 a0005c0010t0009g0061 a0005c0010t0009g0062 a0005c0010t0009g0063 a0005c0010t0009g0064 a0005c0010t0009g0065 a0005c0010t0009g0075 a0006c0005t0002g0006 a0006c0005t0002g0016 a0006c0005t0002g0034 a0006c0005t0002g0035 a0006c0005t0002g0043 a0012c0013t0011g0082 a0012c0013t0011g0083 a0012c0013t0011g0085 a0012c0013t0011g0086 a0012c0013t0011g0087 a0012c0013t0011g0088 a0014c0015t0008g0028 a0014c0015t0008g0066 a0014c0015t0008g0067 a0014c0015t0008g0068 a0015c0016t0010g0080 a0015c0016t0012g0015 a0018c0018t0008g0039 a0018c0018t0008g0040 a0018c0018t0008g0041 a0018c0018t0008g0042 a0019c0020t0010g0030 a0019c0020t0010g0031 a0021c0023t0006g0071 a0021c0023t0006g0072 a0021c0023t0006g0073 a0022c0022t0012g0036 a0022c0022t0012g0037 a0022c0022t0012g0038 a0023c0024t0010g0029 a0023c0024t0010g0081 a0024c0027t0006g0058 a0024c0027t0006g0059 a0025c0026t0006g0069 a0025c0026t0006g0070 a0027c0030t0011g0089 a0030c0035t0009g0060 a0031c0034t0006g0055 a0032c0033t0011g0084	108	208	0.5192	9	c.36 others(18): Show c.368_*369insGAAAAAGGG	HLA-DRB1	ENSG00000196126.12	transcript	ENST00000360004.6	protein_coding		52		chr6	TogoVar
HLA-F_chr6_29718434_29732296	29720270	T T	TAAAAAAT others(2): Show TAAAAAATAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp2 HG01071.hp1 HG01175.hp2 others(5): Show HG01069.hp2 HG01071.hp1 HG01175.hp2 HG01257.hp2 HG01258.hp2 HG02559.hp2 NA19030.hp1 NA20300.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0008 a0003c0003t0001g0008	8	443	0.0181	9	c.-31 others(20): Show c.-3194_-3193insAAAAAATAA	HLA-F	ENSG00000204642.14	transcript	ENST00000259951.12	protein_coding		3163		chr6	TogoVar
HLA-F_chr6_29718434_29732296	29722774	G G	GGAAGAAG others(2): Show GGAAGAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG02280.hp1 HG02280.hp2 others(3): Show HG00609.hp2 HG02280.hp1 HG02280.hp2 HG03239.hp1 NA18941.hp1 NA18953.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0004 a0001c0011 others(1): Show a0001c0001 a0001c0004 a0001c0011 a0006c0007	a0001c0001t0001 a0001c0004t0001 a0001c0011t0001 others(1): Show a0001c0001t0001 a0001c0004t0001 a0001c0011t0001 a0006c0007t0001	a0001c0001t0001g0001 a0001c0004t0001g0001 a0001c0011t0001g0032 others(1): Show a0001c0001t0001g0001 a0001c0004t0001g0001 a0001c0011t0001g0032 a0006c0007t0001g0001	6	443	0.0135	9	c.-69 others(18): Show c.-690_-689insGAAGAAGAA	HLA-F	ENSG00000204642.14	transcript	ENST00000259951.12	protein_coding		659		chr6	TogoVar
HLA-F_chr6_29718434_29732296	29722798	A A	AGAGGAAG others(2): Show AGAGGAAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp1 HG02135.hp2 HG02717.hp2 HG00733.hp1 HG02135.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0002 a0001c0001t0001g0007	3	443	0.0068	9	c.-66 others(18): Show c.-666_-665insGAGGAAGAG	HLA-F	ENSG00000204642.14	transcript	ENST00000259951.12	protein_coding		635		chr6	TogoVar
HLA-F_chr6_29718434_29732296	29722804	A A	AGAGGAAG others(2): Show AGAGGAAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 NA18968.hp2 NA18981.hp2 others(1): Show HG00544.hp1 NA18968.hp2 NA18981.hp2 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0030 a0001c0001t0001g0002 a0001c0001t0001g0030	4	443	0.0090	9	c.-66 others(18): Show c.-660_-659insGAGGAAGAG	HLA-F	ENSG00000204642.14	transcript	ENST00000259951.12	protein_coding		629		chr6	TogoVar
HLA-G_chr6_29822825_29836021	29831449	T T	TTTTTTTT others(2): Show TTTTTTTTTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00735.hp2 HG00738.hp1 others(54): Show HG00099.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01081.hp2 HG01884.hp1 HG01952.hp2 HG01975.hp1 HG01978.hp2 HG02015.hp2 HG02056.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02129.hp2 HG02145.hp2 HG02257.hp1 HG02293.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp2 HG02698.hp2 HG02723.hp2 HG02735.hp1 HG02818.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp2 HG03471.hp1 HG03492.hp2 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03688.hp1 HG03942.hp2 HG04199.hp1 HG06807.hp1 NA18942.hp2 NA18945.hp1 NA18955.hp1 NA18963.hp2 NA18973.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp1 NA18995.hp2 NA18999.hp1 NA19005.hp2 NA19054.hp1 NA19062.hp2 NA19072.hp2 NA19079.hp2 NA19085.hp1 NA19087.hp2 NA19240.hp1 NA20752.hp2 NA20905.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0008	a0001c0003 a0001c0011 a0002c0002 others(4): Show a0001c0003 a0001c0011 a0002c0002 a0002c0007 a0002c0009 a0003c0005 a0008c0016	a0001c0003t0002 a0001c0011t0002 a0002c0002t0001 others(4): Show a0001c0003t0002 a0001c0011t0002 a0002c0002t0001 a0002c0007t0001 a0002c0009t0001 a0003c0005t0006 a0008c0016t0001	a0001c0003t0002g0002 a0001c0003t0002g0023 a0001c0003t0002g0024 others(7): Show a0001c0003t0002g0002 a0001c0003t0002g0023 a0001c0003t0002g0024 a0001c0011t0002g0014 a0002c0002t0001g0001 a0002c0007t0001g0001 a0002c0009t0001g0001 a0003c0005t0006g0005 a0003c0005t0006g0013 a0008c0016t0001g0001	57	479	0.1190	9	c.71 others(18): Show c.710_*711insTTTTTTTTG	HLA-G	ENSG00000204632.13	transcript	ENST00000360323.11	protein_coding		429		chr6	TogoVar
HLCS_chr21_36743626_36971669	36793295	C C	CTTTTTTT others(2): Show CTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01106.hp1 HG01109.hp2 others(10): Show HG00323.hp1 HG01106.hp1 HG01109.hp2 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02615.hp2 HG02886.hp2 HG02976.hp2 HG03130.hp2 HG03471.hp1 HG03516.hp2 NA19043.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0001c0006 others(3): Show a0001c0001 a0001c0003 a0001c0006 a0001c0007 a0002c0002 a0005c0011	a0001c0001t0006 a0001c0001t0018 a0001c0001t0030 others(9): Show a0001c0001t0006 a0001c0001t0018 a0001c0001t0030 a0001c0001t0032 a0001c0003t0007 a0001c0003t0012 a0001c0006t0023 a0001c0007t0007 a0001c0007t0012 a0002c0002t0043 a0002c0002t0048 a0005c0011t0033	a0001c0001t0006g0256 a0001c0001t0018g0176 a0001c0001t0030g0257 others(10): Show a0001c0001t0006g0256 a0001c0001t0018g0176 a0001c0001t0030g0257 a0001c0001t0032g0081 a0001c0003t0007g0215 a0001c0003t0012g0205 a0001c0006t0023g0212 a0001c0006t0023g0222 a0001c0007t0007g0200 a0001c0007t0012g0207 a0002c0002t0043g0152 a0002c0002t0048g0144 a0005c0011t0033g0139	13	258	0.0504	9	c.189 others(30): Show c.1893-26019_1893-26011dupAAAAAAAAA	HLCS	ENSG00000159267.17	transcript	ENST00000674895.3	protein_coding	6/10			chr21	TogoVar
HLCS_chr21_36743626_36971669	36833592	A A	AATTATAT others(2): Show AATTATATAT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02300.hp2 HG02647.hp1 others(4): Show HG02257.hp2 HG02300.hp2 HG02647.hp1 HG03492.hp2 HG03704.hp1 HG03704.hp2 HG03927.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0009c0009 a0001c0001 a0009c0009	a0001c0001t0002 a0001c0001t0032 a0001c0001t0053 others(4): Show a0001c0001t0002 a0001c0001t0032 a0001c0001t0053 a0001c0001t0055 a0001c0001t0061 a0001c0001t0081 a0009c0009t0012	a0001c0001t0002g0183 a0001c0001t0032g0081 a0001c0001t0053g0186 others(4): Show a0001c0001t0002g0183 a0001c0001t0032g0081 a0001c0001t0053g0186 a0001c0001t0055g0185 a0001c0001t0061g0163 a0001c0001t0081g0016 a0009c0009t0012g0196	7	258	0.0271	9	c.189 others(30): Show c.1892+63267_1892+63268insATATATAAT	HLCS	ENSG00000159267.17	transcript	ENST00000674895.3	protein_coding	6/10			chr21	TogoVar
HM13_chr20_31509442_31574543	31512822	A A	AAATAATA others(2): Show AAATAATAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp2 HG02895.hp2 HG02897.hp1 HG00741.hp2 HG02895.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0005 a0001c0001t0003g0018 a0001c0001t0002g0005 a0001c0001t0003g0018	3	202	0.0149	9	c.-17 others(20): Show c.-1730_-1729insAATAATAAT	HM13	ENSG00000101294.19	transcript	ENST00000398174.9	protein_coding		1619		chr20	TogoVar
HMBOX1_chr8_28885395_29058262	28900269	A A	ATATATAT others(2): Show ATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp2 HG01069.hp1 others(19): Show HG00140.hp1 HG00639.hp2 HG01069.hp1 HG01255.hp2 HG02165.hp1 HG02486.hp2 HG02738.hp1 HG02897.hp1 HG02897.hp2 HG03239.hp2 HG03669.hp1 HG03834.hp2 NA18946.hp2 NA18964.hp1 NA18973.hp1 NA18973.hp2 NA18989.hp1 NA19012.hp1 NA19058.hp2 NA19076.hp2 NA19090.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0015	a0001c0001t0001g0140 a0001c0001t0001g0144 a0001c0001t0001g0148 others(19): Show a0001c0001t0001g0140 a0001c0001t0001g0144 a0001c0001t0001g0148 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0001g0321 a0001c0001t0001g0322 a0001c0001t0001g0323 a0001c0001t0002g0270 a0001c0001t0003g0269 a0001c0001t0015g0274	22	344	0.0640	9	c.-58 others(26): Show c.-58+9591_-58+9592insTATATATAT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	1/9			chr8	TogoVar
HMBOX1_chr8_28885395_29058262	28900271	A A	ATATATAT others(2): Show ATATATATAT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01358.hp1 HG01943.hp2 others(6): Show HG01167.hp2 HG01358.hp1 HG01943.hp2 HG02055.hp2 HG02300.hp2 HG02615.hp1 HG03540.hp2 HG06807.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0220 a0001c0001t0001g0299 a0001c0001t0001g0305 others(6): Show a0001c0001t0001g0220 a0001c0001t0001g0299 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0310 a0001c0001t0010g0302 a0001c0001t0010g0311	9	344	0.0262	9	c.-58 others(26): Show c.-58+9593_-58+9594insTATATATAT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	1/9			chr8	TogoVar
HMBS_chr11_119079881_119098549	119085172	C C	CTTTTTTT others(2): Show CTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01106.hp2 HG02055.hp2 others(9): Show HG00735.hp1 HG01106.hp2 HG02055.hp2 HG02148.hp1 HG02738.hp2 NA18944.hp2 NA18953.hp1 NA18960.hp2 NA19000.hp1 NA19060.hp2 NA19082.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0288 a0001c0001t0002g0289 a0001c0001t0002g0290 others(8): Show a0001c0001t0002g0288 a0001c0001t0002g0289 a0001c0001t0002g0290 a0001c0001t0002g0291 a0001c0001t0002g0292 a0001c0001t0002g0293 a0001c0001t0002g0294 a0001c0001t0002g0296 a0001c0001t0002g0297 a0001c0002t0002g0065 a0001c0002t0002g0295	12	444	0.0270	9	c.33+ others(22): Show c.33+127_33+135dupTTTTTTTTT	HMBS	ENSG00000256269.11	transcript	ENST00000652429.1	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
HMCN1_chr1_185729391_186195949	185879295	T T	TGAGTAGT others(2): Show TGAGTAGTTA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02976.hp2 HG03486.hp1 others(3): Show HG01891.hp2 HG02976.hp2 HG03486.hp1 NA18522.hp2 NA19030.hp2 NA19240.hp2	a0001 a0026 a0001 a0026	a0001c0001 a0001c0027 a0026c0040 a0001c0001 a0001c0027 a0026c0040	a0001c0001t0001 a0001c0001t0002 a0001c0027t0002 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0027t0002 a0026c0040t0003	a0001c0001t0001g0087 a0001c0001t0001g0091 a0001c0001t0002g0089 others(3): Show a0001c0001t0001g0087 a0001c0001t0001g0091 a0001c0001t0002g0089 a0001c0001t0002g0090 a0001c0027t0002g0088 a0026c0040t0003g0086	6	92	0.0652	9	c.621 others(28): Show c.621+13434_621+13442dupAGTAGTTAG	HMCN1	ENSG00000143341.12	transcript	ENST00000271588.9	protein_coding	4/106		INFO_REALIGN_3_PRIME	chr1	TogoVar
HMCN1_chr1_185729391_186195949	186005134	T T	TAATTGTT others(2): Show TAATTGTTTA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03486.hp2 HG02258.hp1 HG03486.hp2	a0013 a0013	a0013c0011 a0013c0011	a0013c0011t0004 a0013c0011t0004	a0013c0011t0004g0057 a0013c0011t0004g0058 a0013c0011t0004g0057 a0013c0011t0004g0058	2	92	0.0217	9	c.447 others(28): Show c.4475+1291_4475+1299dupAATTGTTTA	HMCN1	ENSG00000143341.12	transcript	ENST00000271588.9	protein_coding	29/106		INFO_REALIGN_3_PRIME	chr1	TogoVar
HMCN1_chr1_185729391_186195949	186005335	T T	TAATTGTT others(2): Show TAATTGTTTA	intron_variant intron_variant	MODIFIER	HG01074.hp1 NA20129.hp1 HG01074.hp1 NA20129.hp1	a0012 a0012	a0012c0016 a0012c0017 a0012c0016 a0012c0017	a0012c0016t0001 a0012c0017t0001 a0012c0016t0001 a0012c0017t0001	a0012c0016t0001g0044 a0012c0017t0001g0062 a0012c0016t0001g0044 a0012c0017t0001g0062	2	92	0.0217	9	c.447 others(28): Show c.4475+1492_4475+1500dupAATTGTTTA	HMCN1	ENSG00000143341.12	transcript	ENST00000271588.9	protein_coding	29/106		INFO_REALIGN_3_PRIME	chr1	TogoVar
HMCN2_chr9_130260760_130439123	130315294	T T	TTCCCCTC others(2): Show TTCCCCTCCC	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01175.hp1 HG01517.hp2 HG01074.hp1 HG01175.hp1 HG01517.hp2	a0030 a0058 a0030 a0058	a0030c0028 a0058c0111 a0030c0028 a0058c0111	a0030c0028t0002 a0058c0111t0001 a0030c0028t0002 a0058c0111t0001	a0030c0028t0002g0212 a0030c0028t0002g0248 a0058c0111t0001g0078 a0030c0028t0002g0212 a0030c0028t0002g0248 a0058c0111t0001g0078	3	258	0.0116	9	c.235 others(28): Show c.2351-4201_2351-4200insTCCCCTCCC	HMCN2	ENSG00000148357.18	transcript	ENST00000683500.2	protein_coding	15/97			chr9	TogoVar
HMCN2_chr9_130260760_130439123	130435676	C C	CTTTTTTT others(2): Show CTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00738.hp1 HG01074.hp1 others(11): Show HG00099.hp2 HG00738.hp1 HG01074.hp1 HG01175.hp1 HG01243.hp2 HG01257.hp2 HG02257.hp1 HG02280.hp1 HG02976.hp1 HG03490.hp2 NA19030.hp2 NA19074.hp1 NA20300.hp1 homoSapiens_chm13v2.hp1	a0004 a0014 a0023 others(10): Show a0004 a0014 a0023 a0026 a0030 a0036 a0060 a0081 a0127 a0132 a0134 a0159 a0168	a0004c0055 a0014c0040 a0023c0127 others(10): Show a0004c0055 a0014c0040 a0023c0127 a0026c0139 a0030c0028 a0036c0030 a0060c0058 a0081c0071 a0127c0167 a0132c0158 a0134c0151 a0159c0179 a0168c0188	a0004c0055t0001 a0014c0040t0001 a0023c0127t0001 others(10): Show a0004c0055t0001 a0014c0040t0001 a0023c0127t0001 a0026c0139t0002 a0030c0028t0002 a0036c0030t0001 a0060c0058t0001 a0081c0071t0001 a0127c0167t0002 a0132c0158t0002 a0134c0151t0002 a0159c0179t0002 a0168c0188t0002	a0004c0055t0001g0091 a0014c0040t0001g0066 a0023c0127t0001g0097 others(11): Show a0004c0055t0001g0091 a0014c0040t0001g0066 a0023c0127t0001g0097 a0026c0139t0002g0180 a0030c0028t0002g0212 a0030c0028t0002g0248 a0036c0030t0001g0076 a0060c0058t0001g0113 a0081c0071t0001g0062 a0127c0167t0002g0209 a0132c0158t0002g0247 a0134c0151t0002g0203 a0159c0179t0002g0167 a0168c0188t0002g0163	14	258	0.0543	9	c.19 others(20): Show c.1983_*1984insTTTTTTTTT	HMCN2	ENSG00000148357.18	transcript	ENST00000683500.2	protein_coding		1554		chr9	TogoVar
HMG20A_chr15_77415888_77490603	77443352	T T	TATGATGA others(2): Show TATGATGATG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG02257.hp2 HG02809.hp2 others(4): Show HG00408.hp1 HG02257.hp2 HG02809.hp2 HG03130.hp2 HG04115.hp2 HG06807.hp2 NA18951.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0211 a0001c0001t0002g0234 a0001c0001t0002g0290 others(3): Show a0001c0001t0002g0211 a0001c0001t0002g0234 a0001c0001t0002g0290 a0001c0001t0005g0014 a0001c0001t0005g0285 a0001c0001t0005g0288	7	366	0.0191	9	c.-4- others(26): Show c.-4-15031_-4-15023dupGATGATGAT	HMG20A	ENSG00000140382.15	transcript	ENST00000336216.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
HMG20A_chr15_77415888_77490603	77443373	G G	GATTATTA others(2): Show GATTATTATT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01978.hp2 HG01993.hp2 HG01261.hp1 HG01978.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0325 a0001c0001t0003g0331 a0001c0001t0003g0332 a0001c0001t0003g0325 a0001c0001t0003g0331 a0001c0001t0003g0332	3	366	0.0082	9	c.-4- others(26): Show c.-4-15029_-4-15028insTATTATTAT	HMG20A	ENSG00000140382.15	transcript	ENST00000336216.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
HMG20A_chr15_77415888_77490603	77443376	G G	GATTATTA others(2): Show GATTATTATT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp1 HG00423.hp2 others(5): Show HG00140.hp1 HG00323.hp1 HG00423.hp2 NA18612.hp1 NA18956.hp2 NA18969.hp2 NA18974.hp2 NA18979.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0147 a0001c0001t0002g0222 a0001c0001t0002g0223 others(5): Show a0001c0001t0002g0147 a0001c0001t0002g0222 a0001c0001t0002g0223 a0001c0001t0002g0256 a0001c0001t0002g0257 a0001c0001t0002g0258 a0001c0001t0002g0341 a0001c0001t0003g0330	8	366	0.0219	9	c.-4- others(26): Show c.-4-15026_-4-15025insTATTATTAT	HMG20A	ENSG00000140382.15	transcript	ENST00000336216.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
HMG20A_chr15_77415888_77490603	77443379	G G	GATGATGA others(2): Show GATGATGATT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG02258.hp1 HG02895.hp1 others(5): Show HG00280.hp2 HG02258.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03491.hp1 NA19083.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0011	a0001c0001t0002g0212 a0001c0001t0002g0235 a0001c0001t0002g0236 others(5): Show a0001c0001t0002g0212 a0001c0001t0002g0235 a0001c0001t0002g0236 a0001c0001t0002g0237 a0001c0001t0003g0203 a0001c0001t0005g0284 a0001c0001t0005g0286 a0001c0001t0011g0311	8	366	0.0219	9	c.-4- others(26): Show c.-4-15023_-4-15022insGATGATTAT	HMG20A	ENSG00000140382.15	transcript	ENST00000336216.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
HMG20A_chr15_77415888_77490603	77443379	G G	GATGATTA others(2): Show GATGATTATT	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00642.hp2 HG01070.hp1 others(19): Show HG00609.hp1 HG00642.hp2 HG01070.hp1 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp2 HG01884.hp1 HG02071.hp2 HG02074.hp1 HG02132.hp2 HG02622.hp1 HG02683.hp1 HG02735.hp1 HG02738.hp1 HG02922.hp1 HG03831.hp2 HG04204.hp1 NA18977.hp1 NA18991.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0011 a0001c0001t0002 a0001c0001t0011	a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0145 others(19): Show a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0214 a0001c0001t0002g0215 a0001c0001t0002g0216 a0001c0001t0002g0227 a0001c0001t0002g0228 a0001c0001t0002g0238 a0001c0001t0002g0239 a0001c0001t0002g0240 a0001c0001t0002g0241 a0001c0001t0002g0242 a0001c0001t0002g0243 a0001c0001t0002g0244 a0001c0001t0002g0245 a0001c0001t0002g0246 a0001c0001t0002g0247 a0001c0001t0002g0259 a0001c0001t0002g0263 a0001c0001t0011g0312	22	366	0.0601	9	c.-4- others(26): Show c.-4-15023_-4-15022insGATTATTAT	HMG20A	ENSG00000140382.15	transcript	ENST00000336216.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
HMG20A_chr15_77415888_77490603	77443379	G G	GATTATTA others(2): Show GATTATTATT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00733.hp1 HG00735.hp1 others(31): Show HG00140.hp2 HG00733.hp1 HG00735.hp1 HG01167.hp1 HG01255.hp1 HG01261.hp2 HG01358.hp2 HG01433.hp2 HG01496.hp1 HG02040.hp2 HG02602.hp1 HG03490.hp2 HG03492.hp1 HG03704.hp1 HG03710.hp1 NA18939.hp1 NA18942.hp1 NA18952.hp2 NA18953.hp1 NA18959.hp2 NA18960.hp1 NA18975.hp2 NA18980.hp1 NA18984.hp1 NA18990.hp2 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp2 NA19063.hp1 NA19068.hp1 NA19078.hp2 NA19084.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0013 others(26): Show a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0013 a0001c0001t0002g0149 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0002g0213 a0001c0001t0002g0217 a0001c0001t0002g0218 a0001c0001t0002g0219 a0001c0001t0002g0224 a0001c0001t0002g0225 a0001c0001t0002g0229 a0001c0001t0002g0230 a0001c0001t0002g0249 a0001c0001t0002g0250 a0001c0001t0002g0251 a0001c0001t0002g0252 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0261 a0001c0001t0002g0262 a0001c0001t0002g0275 a0001c0001t0002g0276 a0001c0001t0002g0342 a0001c0001t0003g0162 a0001c0001t0003g0307 a0001c0001t0003g0328	34	366	0.0929	9	c.-4- others(26): Show c.-4-15002_-4-14994dupTTATTATTA	HMG20A	ENSG00000140382.15	transcript	ENST00000336216.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
HMGA2_chr12_65819483_65971291	65849736	A A	ATTTTTTT others(2): Show ATTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01074.hp2 HG02040.hp1 others(13): Show HG00558.hp1 HG01074.hp2 HG02040.hp1 HG02074.hp1 HG02135.hp2 HG02683.hp2 HG02717.hp1 HG03017.hp1 HG03139.hp1 HG03831.hp1 HG03942.hp1 NA18959.hp2 NA18972.hp2 NA18978.hp1 NA19001.hp2 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0010 a0001c0001t0015 a0001c0001t0042 a0001c0001t0043 a0001c0001t0097 a0001c0001t0099 a0001c0001t0100 a0001c0001t0103	a0001c0001t0001g0032 a0001c0001t0001g0041 a0001c0001t0001g0042 others(13): Show a0001c0001t0001g0032 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0054 a0001c0001t0002g0039 a0001c0001t0004g0058 a0001c0001t0007g0017 a0001c0001t0010g0040 a0001c0001t0010g0057 a0001c0001t0015g0075 a0001c0001t0042g0071 a0001c0001t0043g0018 a0001c0001t0097g0024 a0001c0001t0099g0011 a0001c0001t0100g0020 a0001c0001t0103g0019	16	236	0.0678	9	c.249 others(28): Show c.249+11183_249+11191dupTTTTTTTTT	HMGA2	ENSG00000149948.14	transcript	ENST00000403681.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
HMGA2_chr12_65819483_65971291	65855699	A A	AGATGATG others(2): Show AGATGATGAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01070.hp2 HG01074.hp1 others(10): Show HG00140.hp2 HG01070.hp2 HG01074.hp1 HG01243.hp2 HG02257.hp2 HG02683.hp1 HG02809.hp1 HG02922.hp2 HG02976.hp2 HG03209.hp1 HG03225.hp1 HG03490.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0046 a0001c0001t0047 others(9): Show a0001c0001t0008 a0001c0001t0046 a0001c0001t0047 a0001c0001t0054 a0001c0001t0057 a0001c0001t0061 a0001c0001t0065 a0001c0001t0078 a0001c0001t0105 a0001c0001t0106 a0001c0001t0110 a0001c0001t0113	a0001c0001t0008g0161 a0001c0001t0046g0169 a0001c0001t0047g0183 others(10): Show a0001c0001t0008g0161 a0001c0001t0046g0169 a0001c0001t0047g0183 a0001c0001t0047g0185 a0001c0001t0054g0177 a0001c0001t0057g0233 a0001c0001t0061g0079 a0001c0001t0065g0081 a0001c0001t0078g0122 a0001c0001t0105g0168 a0001c0001t0106g0167 a0001c0001t0110g0182 a0001c0001t0113g0181	13	236	0.0551	9	c.249 others(28): Show c.249+17161_249+17169dupGATGATGAT	HMGA2	ENSG00000149948.14	transcript	ENST00000403681.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
HMGB1_chr13_30451704_30470936	30464761	T T	TGTGTGTG others(2): Show TGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02602.hp1 NA19003.hp1 others(1): Show HG00544.hp2 HG02602.hp1 NA19003.hp1 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0092 a0001c0001t0001 a0001c0001t0006 a0001c0001t0092	a0001c0001t0001g0080 a0001c0001t0001g0131 a0001c0001t0006g0132 others(1): Show a0001c0001t0001g0080 a0001c0001t0001g0131 a0001c0001t0006g0132 a0001c0001t0092g0133	4	384	0.0104	9	c.-15 others(26): Show c.-15+1034_-15+1035insCACACACAC	HMGB1	ENSG00000189403.15	transcript	ENST00000341423.10	protein_coding	1/4			chr13	TogoVar
HMGB3_chrX_150978335_150995771	150983543	C C	CCTCCGCC others(2): Show CCTCCGCCTT	intron_variant intron_variant	MODIFIER	NA18939.hp1 NA18939.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0049	1	330	0.0030	9	c.-6+ others(22): Show c.-6+169_-6+177dupTCCGCCTTC	HMGB3	ENSG00000029993.15	transcript	ENST00000325307.12	protein_coding	1/4		INFO_REALIGN_3_PRIME	chrX	TogoVar
HMGCLL1_chr6_55429373_55584192	55477216	T T	TTATATAT others(2): Show TTATATATTA	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00642.hp1 HG00673.hp1 others(32): Show HG00408.hp1 HG00642.hp1 HG00673.hp1 HG01074.hp2 HG01496.hp2 HG02055.hp1 HG02129.hp1 HG02132.hp1 HG02602.hp1 HG02647.hp2 NA18522.hp1 NA18747.hp2 NA18941.hp2 NA18944.hp2 NA18946.hp1 NA18950.hp1 NA18954.hp1 NA18956.hp2 NA18959.hp2 NA18960.hp1 NA18963.hp1 NA18970.hp2 NA18985.hp1 NA18986.hp2 NA19003.hp1 NA19007.hp2 NA19056.hp2 NA19060.hp2 NA19063.hp1 NA19064.hp1 NA19077.hp2 NA19083.hp1 NA19084.hp2 NA19085.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0001g0100 others(32): Show a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0132 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0222 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0282 a0001c0001t0001g0285 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0310 a0001c0001t0001g0311 a0001c0001t0001g0312 a0001c0001t0001g0313 a0001c0001t0001g0320 a0001c0001t0001g0321 a0001c0001t0001g0322 a0001c0001t0001g0323 a0001c0001t0001g0324 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0207 a0001c0001t0002g0244 a0001c0001t0002g0245 a0001c0001t0002g0284 a0001c0001t0002g0288 a0001c0001t0002g0289 a0001c0001t0002g0291	35	334	0.1048	9	c.795 others(28): Show c.795+18202_795+18203insTAATATATA	HMGCLL1	ENSG00000146151.14	transcript	ENST00000274901.9	protein_coding	7/8			chr6	TogoVar
HMGCLL1_chr6_55429373_55584192	55533885	C C	CAAAAAAA others(2): Show CAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00558.hp2 HG00621.hp2 others(48): Show HG00323.hp1 HG00558.hp2 HG00621.hp2 HG00673.hp2 HG00738.hp1 HG01069.hp1 HG01069.hp2 HG01070.hp2 HG01168.hp2 HG01192.hp2 HG01243.hp2 HG01257.hp1 HG01258.hp1 HG01433.hp2 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01993.hp1 HG02055.hp2 HG02165.hp1 HG02257.hp2 HG02258.hp2 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02602.hp2 HG02683.hp2 HG02698.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp2 HG03017.hp1 HG03041.hp2 HG03225.hp1 HG03490.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG04199.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18945.hp1 NA18963.hp2 NA18971.hp2 NA18990.hp2 NA19004.hp1 NA19240.hp2 NA20300.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0019	a0001c0001t0001g0008 a0001c0001t0001g0045 a0001c0001t0001g0084 others(48): Show a0001c0001t0001g0008 a0001c0001t0001g0045 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0098 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0131 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0159 a0001c0001t0001g0179 a0001c0001t0001g0196 a0001c0001t0001g0222 a0001c0001t0001g0225 a0001c0001t0001g0309 a0001c0001t0002g0009 a0001c0001t0002g0116 a0001c0001t0002g0117 a0001c0001t0002g0129 a0001c0001t0002g0130 a0001c0001t0002g0170 a0001c0001t0002g0177 a0001c0001t0003g0203 a0001c0001t0003g0217 a0001c0001t0004g0007 a0001c0001t0004g0223 a0001c0001t0004g0224 a0001c0001t0007g0210 a0001c0001t0009g0149 a0001c0001t0009g0150 a0001c0001t0012g0005 a0001c0001t0019g0330	51	334	0.1527	9	c.297 others(26): Show c.297+7835_297+7843dupTTTTTTTTT	HMGCLL1	ENSG00000146151.14	transcript	ENST00000274901.9	protein_coding	3/8			chr6	TogoVar
HMGCR_chr5_75332220_75367101	75352254	T T	TTTATTAT others(2): Show TTTATTATTA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01167.hp2 HG01169.hp1 others(7): Show HG00639.hp1 HG01167.hp2 HG01169.hp1 HG01884.hp1 HG02145.hp1 HG02922.hp1 HG03471.hp2 NA18944.hp1 NA18959.hp1 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0003 a0001c0001t0007	a0001c0001t0003g0066 a0001c0001t0003g0088 a0001c0001t0003g0090 others(4): Show a0001c0001t0003g0066 a0001c0001t0003g0088 a0001c0001t0003g0090 a0001c0001t0003g0093 a0001c0001t0007g0015 a0001c0001t0007g0064 a0001c0001t0007g0065	10	390	0.0256	9	c.136 others(26): Show c.1368+676_1368+684dupATTATTATT	HMGCR	ENSG00000113161.17	transcript	ENST00000287936.9	protein_coding	11/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
HMGCS1_chr5_43282470_43318412	43285412	G G	GATTATTA others(2): Show GATTATTATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp1 HG00738.hp2 HG01074.hp2 others(10): Show HG00738.hp1 HG00738.hp2 HG01074.hp2 HG01175.hp2 HG01517.hp2 HG01952.hp2 HG02165.hp1 HG02970.hp1 HG03579.hp1 HG03654.hp2 HG04115.hp1 NA18997.hp2 NA19065.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 a0001c0002 a0001c0003 a0001c0004	a0001c0002t0001 a0001c0003t0004 a0001c0004t0001 a0001c0002t0001 a0001c0003t0004 a0001c0004t0001	a0001c0002t0001g0002 a0001c0002t0001g0003 a0001c0002t0001g0126 others(6): Show a0001c0002t0001g0002 a0001c0002t0001g0003 a0001c0002t0001g0126 a0001c0003t0004g0005 a0001c0003t0004g0116 a0001c0004t0001g0014 a0001c0004t0001g0015 a0001c0004t0001g0090 a0001c0004t0001g0091	13	312	0.0417	9	c.57 others(20): Show c.5718_*5719insAATAATAAT	HMGCS1	ENSG00000112972.15	transcript	ENST00000325110.11	protein_coding		2057		chr5	TogoVar
HMGN2_chr1_26467440_26481642	26478595	A A	ATTTTTTT others(2): Show ATTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG01167.hp1 HG01175.hp2 others(3): Show HG00140.hp1 HG01167.hp1 HG01175.hp2 HG01981.hp2 HG04228.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	6	390	0.0154	9	c.34 others(20): Show c.3447_*3448insTTTTTTTTT	HMGN2	ENSG00000198830.12	transcript	ENST00000361427.6	protein_coding		1954		chr1	TogoVar
HMGN5_chrX_81108699_81206913	81188263	A A	ATATTATT others(2): Show ATATTATTAT	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00609.hp1 HG01168.hp1 others(40): Show HG00544.hp1 HG00609.hp1 HG01168.hp1 HG01346.hp2 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02080.hp1 HG02135.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03669.hp1 HG04204.hp1 NA18943.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18957.hp1 NA18960.hp1 NA18965.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA18990.hp1 NA18994.hp1 NA18998.hp1 NA19006.hp1 NA19010.hp1 NA19055.hp1 NA19056.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19075.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19089.hp1 NA20805.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0004c0004t0001	a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0018 others(40): Show a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0172 a0001c0001t0003g0050 a0001c0001t0003g0055 a0001c0001t0006g0030 a0004c0004t0001g0027	43	225	0.1911	9	c.-12 others(30): Show c.-124+13465_-124+13473dupATAATAATA	HMGN5	ENSG00000198157.11	transcript	ENST00000358130.7	protein_coding	1/6			chrX	TogoVar

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