view | regionname | pos | ref | alt | annotation | impact | samples | ahapids | chapids | thapids | thapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LAMC2_chr1_183181264_183250127 | 183225057 | G | GAGATACT others(2): Show |
intron_variant | MODIFIER | HG00140.hp2 HG00280.hp2 HG00423.hp2 others(179): Show |
a0001a0002a0003others(10): Show | a0001c0004a0001c0005a0001c0008others(17): Show | a0001c0004t0001a0001c0004t0003a0001c0004t0004others(47): Show | a0001c0004t0001g0275 a0001c0004t0001g0293 a0001c0004t0003g0079 others(153): Show |
182 | 336 | 0.5417 | 9 | c.954 others(24): Show |
LAMC2 | ENSG00000058085.15 | transcript | ENST00000264144.5 | protein_coding | 7/22 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LAMC3_chr9_131004174_131099473 | 131047165 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00280.hp1 HG00558.hp2 HG00642.hp1 others(40): Show |
a0004a0005a0008others(11): Show | a0004c0019a0004c0020a0004c0093others(25): Show | a0004c0019t0001a0004c0020t0002a0004c0093t0002others(31): Show | a0004c0019t0001g0106 a0004c0020t0002g0156 a0004c0093t0002g0155 others(40): Show |
43 | 360 | 0.1194 | 9 | c.151 others(28): Show |
LAMC3 | ENSG00000050555.19 | transcript | ENST00000361069.9 | protein_coding | 8/27 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
LAMP1_chr13_113292239_113328672 | 113306834 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00621.hp2 HG00741.hp1 HG01123.hp1 others(8): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0006 | a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0126 others(8): Show |
11 | 354 | 0.0311 | 9 | c.183 others(24): Show |
LAMP1 | ENSG00000185896.11 | transcript | ENST00000332556.5 | protein_coding | 2/8 | INFO_REALIGN_3_PRIME | chr13 | TogoVar | ||||||
LAMP3_chr3_183117215_183167734 | 183156364 | A | AAACAACA others(2): Show |
intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00280.hp2 others(174): Show |
a0001a0002a0003others(5): Show | a0001c0001a0001c0003a0001c0006others(7): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(26): Show | a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0084 others(156): Show |
177 | 372 | 0.4758 | 9 | c.50- others(24): Show |
LAMP3 | ENSG00000078081.8 | transcript | ENST00000265598.8 | protein_coding | 1/5 | chr3 | TogoVar | |||||||
LAMTOR1_chr11_72092292_72108297 | 72104175 | A | AAAGTCAT others(2): Show |
upstream_gene_variant | MODIFIER | HG00099.hp2 HG00323.hp1 HG00558.hp1 others(82): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0005a0001c0001t0008 | a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0010 others(9): Show |
85 | 424 | 0.2005 | 9 | c.-95 others(18): Show |
LAMTOR1 | ENSG00000149357.10 | transcript | ENST00000278671.10 | protein_coding | 879 | chr11 | TogoVar | |||||||
LAP3_chr4_17572198_17612970 | 17580185 | T | TATATATG others(2): Show |
intron_variant | MODIFIER | HG01123.hp1 HG01192.hp2 HG01952.hp1 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0004 | a0001c0001t0004g0017 a0001c0001t0004g0223 a0001c0001t0004g0224 others(3): Show |
7 | 300 | 0.0233 | 9 | c.218 others(24): Show |
LAP3 | ENSG00000002549.13 | transcript | ENST00000226299.9 | protein_coding | 2/12 | chr4 | TogoVar | |||||||
LAPTM4B_chr8_97770788_97858013 | 97777137 | G | GTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00741.hp1 HG01168.hp1 HG01243.hp1 others(5): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0005a0001c0001t0006a0001c0002t0015others(4): Show | a0001c0001t0005g0007 a0001c0001t0006g0008 a0001c0002t0015g0246 others(5): Show |
8 | 380 | 0.0211 | 9 | c.99+ others(24): Show |
LAPTM4B | ENSG00000104341.17 | transcript | ENST00000521545.7 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | ||||||
LAPTM4B_chr8_97770788_97858013 | 97781278 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00140.hp1 HG00673.hp2 HG01517.hp2 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0007a0001c0001t0008others(2): Show | a0001c0001t0001g0300 a0001c0001t0001g0350 a0001c0001t0007g0032 others(4): Show |
7 | 380 | 0.0184 | 9 | c.99+ others(24): Show |
LAPTM4B | ENSG00000104341.17 | transcript | ENST00000521545.7 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | ||||||
LAPTM4B_chr8_97770788_97858013 | 97798024 | C | CATTAGCT others(2): Show |
intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(197): Show |
a0001a0002a0003 | a0001c0001a0001c0002a0002c0003others(1): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(27): Show | a0001c0001t0001g0019 a0001c0001t0001g0056 a0001c0001t0001g0062 others(197): Show |
200 | 380 | 0.5263 | 9 | c.100 others(26): Show |
LAPTM4B | ENSG00000104341.17 | transcript | ENST00000521545.7 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | ||||||
LAPTM4B_chr8_97770788_97858013 | 97845864 | T | TCCACTCC others(2): Show |
intron_variant | MODIFIER | HG02083.hp1 HG03834.hp2 NA18947.hp2 others(3): Show |
a0001 | a0001c0001 | a0001c0001t0005a0001c0001t0013 | a0001c0001t0005g0046 a0001c0001t0005g0059 a0001c0001t0005g0145 others(3): Show |
6 | 380 | 0.0158 | 9 | c.604 others(26): Show |
LAPTM4B | ENSG00000104341.17 | transcript | ENST00000521545.7 | protein_coding | 6/6 | chr8 | TogoVar | |||||||
LARGE1_chr22_33267509_33925476 | 33304720 | A | AACATGTG others(2): Show |
intron_variant | MODIFIER | HG02717.hp2 HG02896.hp2 HG02897.hp2 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0009 a0001c0001t0001g0078 a0001c0001t0001g0079 |
3 | 110 | 0.0273 | 9 | c.145 others(26): Show |
LARGE1 | ENSG00000133424.22 | transcript | ENST00000397394.8 | protein_coding | 11/14 | chr22 | TogoVar | |||||||
LARGE1_chr22_33267509_33925476 | 33416906 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00621.hp1 HG01099.hp2 HG01346.hp1 others(10): Show |
a0001 | a0001c0001a0001c0002a0001c0004others(1): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0005others(8): Show | a0001c0001t0001g0009 a0001c0001t0001g0044 a0001c0001t0003g0050 others(10): Show |
13 | 110 | 0.1182 | 9 | c.892 others(28): Show |
LARGE1 | ENSG00000133424.22 | transcript | ENST00000397394.8 | protein_coding | 7/14 | chr22 | TogoVar | |||||||
LARGE1_chr22_33267509_33925476 | 33697549 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00280.hp2 HG00621.hp2 HG02148.hp1 others(2): Show |
a0001 | a0001c0001a0001c0002a0001c0017 | a0001c0001t0001a0001c0001t0002a0001c0002t0001others(2): Show | a0001c0001t0001g0053 a0001c0001t0002g0085 a0001c0002t0001g0058 others(2): Show |
5 | 110 | 0.0455 | 9 | c.107 others(28): Show |
LARGE1 | ENSG00000133424.22 | transcript | ENST00000397394.8 | protein_coding | 2/14 | chr22 | TogoVar | |||||||
LARGE1_chr22_33267509_33925476 | 33748024 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG01099.hp2 HG02559.hp2 HG03139.hp2 others(1): Show |
a0001 | a0001c0001a0001c0004a0001c0019 | a0001c0001t0004a0001c0001t0007a0001c0004t0005others(1): Show | a0001c0001t0004g0010 a0001c0001t0007g0048 a0001c0004t0005g0026 others(1): Show |
4 | 110 | 0.0364 | 9 | c.106 others(28): Show |
LARGE1 | ENSG00000133424.22 | transcript | ENST00000397394.8 | protein_coding | 2/14 | chr22 | TogoVar | |||||||
LARGE1_chr22_33267509_33925476 | 33878129 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG01891.hp1 HG02523.hp2 HG02559.hp1 others(1): Show |
a0001 | a0001c0001a0001c0002a0001c0003 | a0001c0001t0002a0001c0001t0030a0001c0002t0006others(1): Show | a0001c0001t0002g0088 a0001c0001t0030g0106 a0001c0002t0006g0080 others(1): Show |
4 | 110 | 0.0364 | 9 | c.-83 others(28): Show |
LARGE1 | ENSG00000133424.22 | transcript | ENST00000397394.8 | protein_coding | 1/14 | chr22 | TogoVar | |||||||
LARP1B_chr4_128056312_128216988 | 128062592 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00423.hp1 HG00544.hp1 HG00558.hp2 others(35): Show |
a0001a0002a0014 | a0001c0001a0002c0002a0014c0013 | a0001c0001t0004a0002c0002t0002a0002c0002t0008others(1): Show | a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 others(35): Show |
38 | 336 | 0.1131 | 9 | c.-78 others(26): Show |
LARP1B | ENSG00000138709.20 | transcript | ENST00000326639.11 | protein_coding | 1/19 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | ||||||
LARP1B_chr4_128056312_128216988 | 128110676 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00544.hp2 HG01074.hp1 HG01169.hp2 others(25): Show |
a0001a0002a0007 | a0001c0001a0002c0002a0007c0008 | a0001c0001t0001a0001c0001t0003a0002c0002t0002others(1): Show | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0010 others(25): Show |
28 | 336 | 0.0833 | 9 | c.988 others(26): Show |
LARP1B | ENSG00000138709.20 | transcript | ENST00000326639.11 | protein_coding | 9/19 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | ||||||
LARP1B_chr4_128056312_128216988 | 128164976 | G | GAAAAAAT others(2): Show |
intron_variant | MODIFIER | HG00558.hp2 HG00597.hp2 HG00609.hp1 others(19): Show |
a0001a0014 | a0001c0001a0014c0013 | a0001c0001t0004a0014c0013t0004 | a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 others(19): Show |
22 | 336 | 0.0655 | 9 | c.164 others(28): Show |
LARP1B | ENSG00000138709.20 | transcript | ENST00000326639.11 | protein_coding | 12/19 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | ||||||
LARP1_chr5_154750377_154822605 | 154778258 | T | TTAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00597.hp2 HG02148.hp2 NA18945.hp2 |
a0001a0004 | a0001c0001a0004c0006 | a0001c0001t0003a0004c0006t0014 | a0001c0001t0003g0275 a0001c0001t0003g0280 a0004c0006t0014g0266 |
3 | 304 | 0.0099 | 9 | c.437 others(28): Show |
LARP1 | ENSG00000155506.19 | transcript | ENST00000518297.6 | protein_coding | 1/18 | chr5 | TogoVar | |||||||
LARP4B_chr10_804497_936705 | 931968 | T | TCCGCCCC others(2): Show |
upstream_gene_variant | MODIFIER | HG01256.hp1 HG02145.hp1 HG02258.hp2 others(25): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0010others(4): Show | a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0060 others(25): Show |
28 | 288 | 0.0972 | 9 | c.-58 others(18): Show |
LARP4B | ENSG00000107929.16 | transcript | ENST00000316157.8 | protein_coding | 264 | chr10 | TogoVar | |||||||
LARS1_chr5_146108034_146187650 | 146111100 | T | TATAATAA others(2): Show |
downstream_gene_variant | MODIFIER | HG01255.hp1 HG01346.hp1 HG01952.hp1 others(7): Show |
a0001a0002a0006 | a0001c0001a0002c0002a0006c0015 | a0001c0001t0001a0001c0001t0004a0002c0002t0002others(1): Show | a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0004g0193 others(7): Show |
10 | 284 | 0.0352 | 9 | c.*29 others(20): Show |
LARS1 | ENSG00000133706.20 | transcript | ENST00000394434.7 | protein_coding | 1933 | chr5 | TogoVar | |||||||
LAS1L_chrX_65507582_65539787 | 65508134 | A | ACTTCCAA others(2): Show |
downstream_gene_variant | MODIFIER | HG02809.hp1 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0141 | 1 | 203 | 0.0049 | 9 | c.*46 others(20): Show |
LAS1L | ENSG00000001497.18 | transcript | ENST00000374811.8 | protein_coding | 4447 | chrX | TogoVar | |||||||
LAS1L_chrX_65507582_65539787 | 65525748 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00735.hp2 HG02886.hp1 HG03453.hp1 others(2): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0020 a0001c0001t0001g0066 a0001c0001t0001g0139 others(1): Show |
5 | 203 | 0.0246 | 9 | c.957 others(24): Show |
LAS1L | ENSG00000001497.18 | transcript | ENST00000374811.8 | protein_coding | 7/13 | chrX | TogoVar | |||||||
LAS1L_chrX_65507582_65539787 | 65538526 | A | ATATATAT others(2): Show |
upstream_gene_variant | MODIFIER | NA18994.hp1 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0001 | 1 | 203 | 0.0049 | 9 | c.-38 others(20): Show |
LAS1L | ENSG00000001497.18 | transcript | ENST00000374811.8 | protein_coding | 3740 | chrX | TogoVar | |||||||
LAS1L_chrX_65507582_65539787 | 65538527 | T | TATATATA others(2): Show |
upstream_gene_variant | MODIFIER | NA18999.hp1 NA19083.hp1 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0002 a0001c0001t0001g0012 |
2 | 203 | 0.0099 | 9 | c.-38 others(20): Show |
LAS1L | ENSG00000001497.18 | transcript | ENST00000374811.8 | protein_coding | 3741 | chrX | TogoVar | |||||||
LASP1_chr17_38865058_38926770 | 38900380 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG02280.hp1 HG02622.hp1 HG02895.hp2 others(15): Show |
a0001a0005 | a0001c0001a0001c0002a0001c0007others(1): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(5): Show | a0001c0001t0001g0256 a0001c0001t0002g0085 a0001c0001t0002g0384 others(15): Show |
18 | 396 | 0.0455 | 9 | c.357 others(26): Show |
LASP1 | ENSG00000002834.19 | transcript | ENST00000318008.11 | protein_coding | 4/6 | INFO_REALIGN_3_PRIME | chr17 | TogoVar | ||||||
LATS2_chr13_20968036_21066586 | 20990461 | A | ATTTTTTT others(2): Show |
intron_variant | MODIFIER | HG01433.hp2 HG02055.hp1 HG02257.hp2 others(9): Show |
a0003a0006 | a0003c0004a0003c0005a0003c0007others(2): Show | a0003c0004t0002a0003c0004t0004a0003c0004t0044others(6): Show | a0003c0004t0002g0190 a0003c0004t0004g0301 a0003c0004t0044g0110 others(9): Show |
12 | 316 | 0.0380 | 9 | c.475 others(24): Show |
LATS2 | ENSG00000150457.9 | transcript | ENST00000382592.5 | protein_coding | 3/7 | chr13 | TogoVar | |||||||
LATS2_chr13_20968036_21066586 | 21010201 | A | ACAAACAA others(2): Show |
intron_variant | MODIFIER | HG00597.hp2 HG00639.hp1 HG01358.hp1 others(14): Show |
a0002a0004a0009others(1): Show | a0002c0006a0002c0026a0002c0041others(3): Show | a0002c0006t0004a0002c0026t0023a0002c0041t0035others(3): Show | a0002c0006t0004g0011 a0002c0006t0004g0012 a0002c0006t0004g0015 others(14): Show |
17 | 316 | 0.0538 | 9 | c.343 others(28): Show |
LATS2 | ENSG00000150457.9 | transcript | ENST00000382592.5 | protein_coding | 2/7 | chr13 | TogoVar | |||||||
LAX1_chr1_203760183_203781372 | 203770457 | G | GAGAGAGA others(2): Show |
intron_variant | MODIFIER | HG01496.hp1 HG01515.hp2 HG01943.hp2 others(4): Show |
a0001a0004 | a0001c0001a0004c0012 | a0001c0001t0003a0001c0001t0007a0001c0001t0033others(1): Show | a0001c0001t0003g0315 a0001c0001t0003g0347 a0001c0001t0003g0366 others(4): Show |
7 | 422 | 0.0166 | 9 | c.90- others(22): Show |
LAX1 | ENSG00000122188.13 | transcript | ENST00000442561.7 | protein_coding | 1/4 | chr1 | TogoVar | |||||||
LBH_chr2_30226534_30265028 | 30230387 | T | TTCAATAC others(2): Show |
upstream_gene_variant | MODIFIER | HG01109.hp1 HG01433.hp1 HG01496.hp1 others(19): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0003a0001c0001t0010others(8): Show | a0001c0001t0001g0013 a0001c0001t0001g0054 a0001c0001t0001g0055 others(17): Show |
22 | 396 | 0.0556 | 9 | c.-13 others(20): Show |
LBH | ENSG00000213626.13 | transcript | ENST00000395323.9 | protein_coding | 1146 | chr2 | TogoVar | |||||||
LBP_chr20_38341482_38382013 | 38374950 | A | ATTTTTTT others(2): Show |
intron_variant | MODIFIER | HG01192.hp2 HG01256.hp2 HG01515.hp2 others(20): Show |
a0001a0002a0007others(2): Show | a0001c0014a0002c0007a0002c0009others(5): Show | a0001c0014t0003a0002c0007t0001a0002c0009t0001others(6): Show | a0001c0014t0003g0054 a0002c0007t0001g0013 a0002c0007t0001g0317 others(12): Show |
23 | 394 | 0.0584 | 9 | c.140 others(26): Show |
LBP | ENSG00000129988.6 | transcript | ENST00000217407.3 | protein_coding | 14/14 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
LCA5L_chr21_39400728_39450778 | 39428599 | T | TATATATA others(2): Show |
intron_variant | MODIFIER | HG00438.hp1 HG00438.hp2 HG00621.hp2 others(10): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0002 | a0001c0001t0001g0018 a0001c0001t0001g0071 a0001c0001t0001g0072 others(9): Show |
13 | 340 | 0.0382 | 9 | c.-10 others(22): Show |
LCA5L | ENSG00000157578.14 | transcript | ENST00000288350.8 | protein_coding | 4/10 | chr21 | TogoVar | |||||||
LCA5_chr6_79479991_79542430 | 79538018 | G | GTTTTTTT others(2): Show |
upstream_gene_variant | MODIFIER | HG02055.hp1 HG02129.hp2 HG02602.hp1 others(7): Show |
a0001a0003 | a0001c0001a0003c0003 | a0001c0001t0002a0003c0003t0004a0003c0003t0011 | a0001c0001t0002g0002 a0001c0001t0002g0089 a0001c0001t0002g0176 others(6): Show |
10 | 400 | 0.0250 | 9 | c.-10 others(20): Show |
LCA5 | ENSG00000135338.14 | transcript | ENST00000369846.9 | protein_coding | 589 | chr6 | TogoVar | |||||||
LCLAT1_chr2_30442246_30649225 | 30461770 | C | CCTTTTTT others(2): Show |
intron_variant | MODIFIER | NA18968.hp2 NA19005.hp2 NA19007.hp2 others(1): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0005a0002c0002t0009 | a0001c0001t0005g0088 a0001c0001t0005g0116 a0002c0002t0009g0066 others(1): Show |
4 | 366 | 0.0109 | 9 | c.-5+ others(26): Show |
LCLAT1 | ENSG00000172954.14 | transcript | ENST00000379509.8 | protein_coding | 1/5 | chr2 | TogoVar | |||||||
LCMT1_chr16_25106742_25183228 | 25108801 | C | CTTTTGTT others(2): Show |
upstream_gene_variant | MODIFIER | HG00099.hp1 HG00140.hp1 HG01074.hp2 others(6): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002 | a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0170 others(6): Show |
9 | 348 | 0.0259 | 9 | c.-30 others(20): Show |
LCMT1 | ENSG00000205629.12 | transcript | ENST00000399069.8 | protein_coding | 2940 | chr16 | TogoVar | |||||||
LCMT1_chr16_25106742_25183228 | 25125838 | G | GTAATAAT others(2): Show |
intron_variant | MODIFIER | HG00609.hp2 HG02717.hp2 HG02922.hp2 others(11): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0001 | a0001c0001t0001g0001 a0001c0001t0001g0023 a0001c0001t0001g0025 others(9): Show |
14 | 348 | 0.0402 | 9 | c.114 others(26): Show |
LCMT1 | ENSG00000205629.12 | transcript | ENST00000399069.8 | protein_coding | 1/10 | INFO_REALIGN_3_PRIME | chr16 | TogoVar | ||||||
LCMT1_chr16_25106742_25183228 | 25179975 | C | CAAAAAAA others(2): Show |
downstream_gene_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(66): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0013 others(64): Show |
69 | 348 | 0.1983 | 9 | c.*19 others(20): Show |
LCMT1 | ENSG00000205629.12 | transcript | ENST00000399069.8 | protein_coding | 1748 | chr16 | TogoVar | |||||||
LCN10_chr9_136733170_136747940 | 136747664 | T | TCCAGATC others(2): Show |
upstream_gene_variant | MODIFIER | HG02258.hp1 HG02451.hp1 HG02559.hp1 others(7): Show |
a0001a0002a0003others(2): Show | a0001c0001a0002c0002a0003c0004others(2): Show | a0001c0001t0004a0001c0001t0021a0002c0002t0002others(5): Show | a0001c0001t0004g0005 a0001c0001t0021g0044 a0002c0002t0002g0017 others(6): Show |
10 | 392 | 0.0255 | 9 | c.-47 others(20): Show |
LCN10 | ENSG00000187922.14 | transcript | ENST00000497771.6 | protein_coding | 4725 | chr9 | TogoVar | |||||||
LCN12_chr9_136947273_136960497 | 136951022 | G | GGTGGGAG others(2): Show |
upstream_gene_variant | MODIFIER | HG00408.hp1 HG00408.hp2 HG00438.hp1 others(232): Show |
a0001a0002a0003 | a0001c0001a0001c0009a0002c0003others(1): Show | a0001c0001t0001a0001c0009t0001a0002c0003t0001others(1): Show | a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0009 others(18): Show |
235 | 382 | 0.6152 | 9 | c.-13 others(20): Show |
LCN12 | ENSG00000184925.12 | transcript | ENST00000371633.8 | protein_coding | 1250 | chr9 | TogoVar | |||||||
LCN12_chr9_136947273_136960497 | 136951025 | G | GGGAGGAG others(2): Show |
upstream_gene_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(122): Show |
a0001a0004a0005others(1): Show | a0001c0001a0001c0002a0001c0006others(3): Show | a0001c0001t0001a0001c0002t0001a0001c0006t0001others(3): Show | a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0006 others(17): Show |
125 | 382 | 0.3272 | 9 | c.-13 others(20): Show |
LCN12 | ENSG00000184925.12 | transcript | ENST00000371633.8 | protein_coding | 1247 | chr9 | TogoVar | |||||||
LCN15_chr9_136754634_136769518 | 136759954 | T | TGCCCCAC others(2): Show |
intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(224): Show |
a0001a0002a0003others(1): Show | a0001c0001a0001c0003a0002c0004others(3): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(5): Show | a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 others(39): Show |
227 | 356 | 0.6376 | 9 | c.*33 others(24): Show |
LCN15 | ENSG00000177984.7 | transcript | ENST00000316144.6 | protein_coding | 6/6 | chr9 | TogoVar | |||||||
LCN15_chr9_136754634_136769518 | 136769324 | C | CACCCCGA others(2): Show |
upstream_gene_variant | MODIFIER | HG02040.hp1 HG03704.hp2 NA19080.hp2 |
a0002 | a0002c0002 | a0002c0002t0001 | a0002c0002t0001g0002 | 3 | 356 | 0.0084 | 9 | c.-48 others(20): Show |
LCN15 | ENSG00000177984.7 | transcript | ENST00000316144.6 | protein_coding | 4807 | chr9 | TogoVar | |||||||
LCN15_chr9_136754634_136769518 | 136769383 | C | CACCCCGA others(2): Show |
upstream_gene_variant | MODIFIER | HG00673.hp1 HG02040.hp1 HG03831.hp2 others(2): Show |
a0002 | a0002c0002 | a0002c0002t0001 | a0002c0002t0001g0002 a0002c0002t0001g0040 |
5 | 356 | 0.0140 | 9 | c.-48 others(20): Show |
LCN15 | ENSG00000177984.7 | transcript | ENST00000316144.6 | protein_coding | 4866 | chr9 | TogoVar | |||||||
LCN6_chr9_136739017_136753525 | 136747664 | T | TCCAGATC others(2): Show |
intron_variant | MODIFIER | HG02258.hp1 HG02451.hp2 HG02559.hp1 others(7): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0001a0002c0002t0003 | a0001c0001t0001g0016 a0001c0001t0001g0030 a0001c0001t0001g0046 others(4): Show |
10 | 396 | 0.0253 | 9 | c.91- others(22): Show |
LCN6 | ENSG00000267206.6 | transcript | ENST00000341206.9 | protein_coding | 1/6 | chr9 | TogoVar | |||||||
LCN8_chr9_136749386_136763243 | 136759954 | T | TGCCCCAC others(2): Show |
upstream_gene_variant | MODIFIER | HG00099.hp1 HG00140.hp1 HG00140.hp2 others(233): Show |
a0001a0002a0004 | a0001c0001a0001c0006a0001c0008others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0006others(8): Show | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(31): Show |
236 | 368 | 0.6413 | 9 | c.-20 others(20): Show |
LCN8 | ENSG00000204001.10 | transcript | ENST00000371688.8 | protein_coding | 1712 | chr9 | TogoVar | |||||||
LCORL_chr4_17836187_18026755 | 17858729 | A | AAATAATA others(2): Show |
intron_variant | MODIFIER | HG02145.hp2 HG02818.hp2 HG03209.hp1 others(1): Show |
a0005 | a0005c0006 | a0005c0006t0005a0005c0006t0011 | a0005c0006t0005g0231 a0005c0006t0011g0208 a0005c0006t0011g0229 others(1): Show |
4 | 292 | 0.0137 | 9 | c.560 others(30): Show |
LCORL | ENSG00000178177.17 | transcript | ENST00000635767.2 | protein_coding | 7/7 | chr4 | TogoVar | |||||||
LCOR_chr10_96827298_97000956 | 96989696 | T | TATATATA others(2): Show |
3_prime_UTR_variant | MODIFIER | HG00639.hp1 HG01261.hp1 HG01361.hp2 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0023a0001c0001t0067a0001c0001t0070 | a0001c0001t0023g0130 a0001c0001t0023g0159 a0001c0001t0067g0138 others(1): Show |
4 | 288 | 0.0139 | 9 | c.*45 others(20): Show |
LCOR | ENSG00000196233.14 | transcript | ENST00000421806.4 | protein_coding | 8/8 | 4563 | chr10 | TogoVar | ||||||
LCP2_chr5_170241233_170302777 | 170290956 | G | GAAAGAAA others(2): Show |
intron_variant | MODIFIER | HG02145.hp2 HG02735.hp1 HG02886.hp1 others(3): Show |
a0001 | a0001c0001a0001c0002a0001c0003others(1): Show | a0001c0001t0001a0001c0002t0001a0001c0002t0021others(2): Show | a0001c0001t0001g0343 a0001c0002t0001g0143 a0001c0002t0021g0340 others(3): Show |
6 | 384 | 0.0156 | 9 | c.141 others(26): Show |
LCP2 | ENSG00000043462.13 | transcript | ENST00000046794.10 | protein_coding | 2/20 | chr5 | TogoVar | |||||||
LCTL_chr15_66542532_66570998 | 66544724 | T | TGTGTGTG others(2): Show |
downstream_gene_variant | MODIFIER | HG00408.hp1 HG00408.hp2 HG00438.hp1 others(55): Show |
a0001a0004a0007 | a0001c0001a0004c0007a0007c0014 | a0001c0001t0001a0004c0007t0001a0007c0014t0001 | a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0007 others(26): Show |
58 | 434 | 0.1336 | 9 | c.*37 others(20): Show |
LCTL | ENSG00000188501.12 | transcript | ENST00000695545.1 | protein_coding | 2807 | chr15 | TogoVar | |||||||
LCT_chr2_135782850_135842184 | 135795604 | C | CTAATAAT others(2): Show |
intron_variant | MODIFIER | HG01069.hp1 HG01071.hp2 HG01496.hp2 others(7): Show |
a0003 | a0003c0003 | a0003c0003t0002 | a0003c0003t0002g0005 a0003c0003t0002g0058 a0003c0003t0002g0067 others(5): Show |
10 | 366 | 0.0273 | 9 | c.497 others(26): Show |
LCT | ENSG00000115850.10 | transcript | ENST00000264162.7 | protein_coding | 13/16 | chr2 | TogoVar |