view | regionname | pos | ref | alt | annotation | impact | samples | ahapids | chapids | thapids | thapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LRRC3C_chr17_39922732_39949999 | 39945991 | T | TAAAAAAA others(2): Show |
downstream_gene_variant | MODIFIER | HG00323.hp1 HG00423.hp1 HG00558.hp2 others(40): Show |
a0001 | a0001c0001a0001c0002a0001c0005others(1): Show | a0001c0001t0001a0001c0002t0001a0001c0005t0001others(1): Show | a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0010 others(33): Show |
43 | 404 | 0.1064 | 9 | c.*12 others(20): Show |
LRRC3C | ENSG00000204913.7 | transcript | ENST00000377924.6 | protein_coding | 993 | chr17 | TogoVar | |||||||
LRRC40_chr1_70139805_70210579 | 70190677 | T | TAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG01358.hp2 HG02145.hp1 HG03492.hp2 others(3): Show |
a0001a0004 | a0001c0001a0004c0010 | a0001c0001t0001a0001c0001t0003a0004c0010t0001 | a0001c0001t0001g0029 a0001c0001t0001g0061 a0001c0001t0001g0149 others(3): Show |
6 | 320 | 0.0188 | 9 | c.152 others(26): Show |
LRRC40 | ENSG00000066557.6 | transcript | ENST00000370952.4 | protein_coding | 1/14 | chr1 | TogoVar | |||||||
LRRC4C_chr11_40109209_41464652 | 40383920 | A | AATTATTA others(2): Show |
intron_variant | MODIFIER | HG01261.hp2 HG02896.hp1 |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0002t0002 | a0001c0001t0001g0039 a0001c0002t0002g0046 |
2 | 48 | 0.0417 | 9 | c.-26 others(30): Show |
LRRC4C | ENSG00000148948.8 | transcript | ENST00000528697.6 | protein_coding | 3/6 | chr11 | TogoVar | |||||||
LRRC4C_chr11_40109209_41464652 | 40721775 | C | CCTGTCTC others(2): Show |
intron_variant | MODIFIER | HG02055.hp2 HG02280.hp2 HG02572.hp1 others(23): Show |
a0001a0002 | a0001c0001a0001c0002a0002c0003 | a0001c0001t0001a0001c0001t0002a0001c0002t0001others(2): Show | a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0006 others(23): Show |
26 | 48 | 0.5417 | 9 | c.-40 others(30): Show |
LRRC4C | ENSG00000148948.8 | transcript | ENST00000528697.6 | protein_coding | 2/6 | chr11 | TogoVar | |||||||
LRRC52_chr1_165539000_165568957 | 165554426 | G | GGTTGTTG others(2): Show |
intron_variant | MODIFIER | HG00140.hp1 HG00323.hp1 HG00735.hp2 others(26): Show |
a0001a0002 | a0001c0001a0001c0002a0002c0003 | a0001c0001t0001a0001c0002t0002a0002c0003t0006 | a0001c0001t0001g0030 a0001c0001t0001g0034 a0001c0001t0001g0037 others(16): Show |
29 | 350 | 0.0829 | 9 | c.623 others(26): Show |
LRRC52 | ENSG00000162763.4 | transcript | ENST00000294818.2 | protein_coding | 1/1 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC53_chr1_74464376_74517611 | 74486506 | G | GTTTTTTG others(2): Show |
intron_variant | MODIFIER | HG01074.hp2 HG01255.hp1 HG02280.hp1 |
a0004a0013 | a0004c0003a0004c0014a0013c0015 | a0004c0003t0001a0004c0014t0001a0013c0015t0001 | a0004c0003t0001g0019 a0004c0014t0001g0237 a0013c0015t0001g0225 |
3 | 342 | 0.0088 | 9 | c.-26 others(26): Show |
LRRC53 | ENSG00000162621.7 | transcript | ENST00000294635.5 | protein_coding | 1/4 | chr1 | TogoVar | |||||||
LRRC57_chr15_42532829_42553793 | 42539477 | C | CAAAAAAA others(2): Show |
3_prime_UTR_variant | MODIFIER | HG00642.hp2 HG00733.hp2 HG00738.hp1 others(33): Show |
a0001 | a0001c0001 | a0001c0001t0006a0001c0001t0016a0001c0001t0018others(16): Show | a0001c0001t0006g0011 a0001c0001t0006g0017 a0001c0001t0006g0029 others(21): Show |
36 | 356 | 0.1011 | 9 | c.*45 others(20): Show |
LRRC57 | ENSG00000180979.10 | transcript | ENST00000397130.8 | protein_coding | 6/6 | 4605 | chr15 | TogoVar | ||||||
LRRC57_chr15_42532829_42553793 | 42544836 | C | CTATATAT others(2): Show |
intron_variant | MODIFIER | HG01496.hp2 HG02109.hp2 HG02280.hp1 others(8): Show |
a0001 | a0001c0001 | a0001c0001t0007a0001c0001t0016a0001c0001t0036 | a0001c0001t0007g0007 a0001c0001t0016g0018 a0001c0001t0036g0151 |
11 | 356 | 0.0309 | 9 | c.678 others(24): Show |
LRRC57 | ENSG00000180979.10 | transcript | ENST00000397130.8 | protein_coding | 5/5 | chr15 | TogoVar | |||||||
LRRC71_chr1_156915632_156938094 | 156928363 | C | CTCTTCTT others(2): Show |
intron_variant | MODIFIER | HG00735.hp2 HG01515.hp2 HG01517.hp2 others(2): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0003t0001 | a0001c0001t0001g0040 a0001c0001t0001g0241 a0001c0001t0001g0259 others(1): Show |
5 | 402 | 0.0124 | 9 | c.996 others(24): Show |
LRRC71 | ENSG00000160838.14 | transcript | ENST00000337428.8 | protein_coding | 9/14 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC71_chr1_156915632_156938094 | 156936495 | A | ATATATAT others(2): Show |
downstream_gene_variant | MODIFIER | HG01192.hp1 HG01255.hp2 HG01981.hp1 others(5): Show |
a0001a0003 | a0001c0001a0003c0004 | a0001c0001t0001a0003c0004t0001 | a0001c0001t0001g0002 a0001c0001t0001g0014 a0001c0001t0001g0042 others(4): Show |
8 | 402 | 0.0199 | 9 | c.*35 others(20): Show |
LRRC71 | ENSG00000160838.14 | transcript | ENST00000337428.8 | protein_coding | 3402 | chr1 | TogoVar | |||||||
LRRC71_chr1_156915632_156938094 | 156936497 | A | ATATATAT others(2): Show |
downstream_gene_variant | MODIFIER | HG01496.hp1 HG02165.hp1 HG02965.hp1 others(4): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0001 | a0001c0001t0001g0019 a0001c0001t0001g0043 a0002c0002t0001g0007 others(4): Show |
7 | 402 | 0.0174 | 9 | c.*35 others(20): Show |
LRRC71 | ENSG00000160838.14 | transcript | ENST00000337428.8 | protein_coding | 3404 | chr1 | TogoVar | |||||||
LRRC75B_chr22_24580635_24598073 | 24597684 | A | ACACACAC others(2): Show |
upstream_gene_variant | MODIFIER | HG02615.hp1 HG02723.hp1 HG02922.hp1 others(1): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0003t0001 | a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0003t0001g0061 others(1): Show |
4 | 462 | 0.0087 | 9 | c.-46 others(20): Show |
LRRC75B | ENSG00000178026.13 | transcript | ENST00000318753.13 | protein_coding | 4612 | chr22 | TogoVar | |||||||
LRRC7_chr1_69562922_70149364 | 69717936 | G | GAAAGAAG others(2): Show |
intron_variant | MODIFIER | HG00621.hp1 HG00738.hp2 HG01167.hp1 others(25): Show |
a0001a0003a0005others(1): Show | a0001c0001a0001c0002a0001c0004others(3): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0006others(24): Show | a0001c0001t0001g0012 a0001c0001t0001g0079 a0001c0001t0003g0022 others(25): Show |
28 | 108 | 0.2593 | 9 | c.100 others(28): Show |
LRRC7 | ENSG00000033122.21 | transcript | ENST00000651989.2 | protein_coding | 2/26 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC7_chr1_69562922_70149364 | 69718119 | A | AAAGAGAG others(2): Show |
intron_variant | MODIFIER | HG00738.hp2 HG01515.hp2 |
a0001 | a0001c0001 | a0001c0001t0006a0001c0001t0046 | a0001c0001t0006g0081 a0001c0001t0046g0078 |
2 | 108 | 0.0185 | 9 | c.100 others(28): Show |
LRRC7 | ENSG00000033122.21 | transcript | ENST00000651989.2 | protein_coding | 2/26 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC7_chr1_69562922_70149364 | 69898661 | C | CGCTGCTG others(2): Show |
intron_variant | MODIFIER | HG01167.hp1 HG02559.hp2 HG02922.hp2 others(2): Show |
a0001a0007 | a0001c0001a0001c0004a0007c0010 | a0001c0001t0063a0001c0001t0092a0001c0004t0057others(2): Show | a0001c0001t0063g0057 a0001c0001t0092g0101 a0001c0004t0057g0060 others(2): Show |
5 | 108 | 0.0463 | 9 | c.648 others(28): Show |
LRRC7 | ENSG00000033122.21 | transcript | ENST00000651989.2 | protein_coding | 7/26 | chr1 | TogoVar | |||||||
LRRC7_chr1_69562922_70149364 | 69898662 | A | ACTGCTGC others(2): Show |
intron_variant | MODIFIER | HG01243.hp2 HG02129.hp1 HG02735.hp2 others(10): Show |
a0001 | a0001c0001a0001c0002a0001c0003others(1): Show | a0001c0001t0001a0001c0001t0021a0001c0001t0030others(9): Show | a0001c0001t0001g0079 a0001c0001t0001g0087 a0001c0001t0021g0003 others(10): Show |
13 | 108 | 0.1204 | 9 | c.648 others(28): Show |
LRRC7 | ENSG00000033122.21 | transcript | ENST00000651989.2 | protein_coding | 7/26 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC7_chr1_69562922_70149364 | 70064639 | T | TTTGTTGT others(2): Show |
intron_variant | MODIFIER | HG02055.hp1 HG02257.hp1 HG03195.hp1 others(1): Show |
a0001a0008 | a0001c0001a0008c0016 | a0001c0001t0003a0001c0001t0053a0008c0016t0065 | a0001c0001t0003g0022 a0001c0001t0003g0041 a0001c0001t0053g0058 others(1): Show |
4 | 108 | 0.0370 | 9 | c.423 others(30): Show |
LRRC7 | ENSG00000033122.21 | transcript | ENST00000651989.2 | protein_coding | 23/26 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC8D_chr1_89816032_89941611 | 89860783 | A | ATATATAT others(2): Show |
intron_variant | MODIFIER | HG02145.hp1 HG03831.hp1 NA19000.hp1 |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003 | a0001c0001t0001g0041 a0001c0001t0001g0201 a0001c0001t0003g0171 |
3 | 210 | 0.0143 | 9 | c.-3+ others(26): Show |
LRRC8D | ENSG00000171492.14 | transcript | ENST00000337338.9 | protein_coding | 2/2 | chr1 | TogoVar | |||||||
LRRC8D_chr1_89816032_89941611 | 89860785 | A | AAATATAT others(2): Show |
intron_variant | MODIFIER | HG02683.hp2 NA18612.hp1 NA18990.hp1 others(2): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003a0001c0001t0004 | a0001c0001t0001g0121 a0001c0001t0001g0184 a0001c0001t0003g0054 others(2): Show |
5 | 210 | 0.0238 | 9 | c.-3+ others(26): Show |
LRRC8D | ENSG00000171492.14 | transcript | ENST00000337338.9 | protein_coding | 2/2 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
LRRC8D_chr1_89816032_89941611 | 89860785 | A | ATATATAT others(2): Show |
intron_variant | MODIFIER | HG00323.hp2 HG00639.hp2 HG00738.hp2 others(10): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003a0001c0001t0005others(1): Show | a0001c0001t0001g0095 a0001c0001t0001g0125 a0001c0001t0001g0172 others(10): Show |
13 | 210 | 0.0619 | 9 | c.-3+ others(26): Show |
LRRC8D | ENSG00000171492.14 | transcript | ENST00000337338.9 | protein_coding | 2/2 | chr1 | TogoVar | |||||||
LRRCC1_chr8_85102238_85151080 | 85125670 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(147): Show |
a0001a0002a0003others(7): Show | a0001c0001a0002c0002a0003c0003others(7): Show | a0001c0001t0001a0001c0001t0002a0002c0002t0001others(11): Show | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(84): Show |
150 | 326 | 0.4601 | 9 | c.127 others(26): Show |
LRRCC1 | ENSG00000133739.16 | transcript | ENST00000360375.8 | protein_coding | 8/18 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | ||||||
LRRFIP2_chr3_37047626_37179582 | 37126868 | A | AAAAAGAA others(2): Show |
intron_variant | MODIFIER | HG00741.hp1 HG01109.hp1 HG02055.hp1 others(6): Show |
a0001a0004 | a0001c0001a0004c0004 | a0001c0001t0002a0004c0004t0002 | a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0028 others(6): Show |
9 | 268 | 0.0336 | 9 | c.228 others(24): Show |
LRRFIP2 | ENSG00000093167.18 | transcript | ENST00000336686.9 | protein_coding | 4/27 | chr3 | TogoVar | |||||||
LRRIQ1_chr12_85031351_85250105 | 85086935 | C | CATTATTA others(2): Show |
intron_variant | MODIFIER | HG01891.hp2 HG02109.hp2 HG02257.hp2 others(15): Show |
a0001a0004a0013others(1): Show | a0001c0001a0001c0005a0004c0011others(2): Show | a0001c0001t0001a0001c0001t0002a0001c0005t0001others(3): Show | a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0010 others(15): Show |
18 | 228 | 0.0790 | 9 | c.288 others(30): Show |
LRRIQ1 | ENSG00000133640.20 | transcript | ENST00000393217.7 | protein_coding | 11/26 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | ||||||
LRRIQ3_chr1_74021015_74203176 | 74022362 | C | CAAAAAAA others(2): Show |
downstream_gene_variant | MODIFIER | HG00280.hp1 HG01071.hp1 HG01074.hp2 others(7): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0003 | a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 others(7): Show |
10 | 274 | 0.0365 | 9 | c.*44 others(20): Show |
LRRIQ3 | ENSG00000162620.16 | transcript | ENST00000354431.9 | protein_coding | 3652 | chr1 | TogoVar | |||||||
LRRIQ3_chr1_74021015_74203176 | 74060188 | T | TTTCTTCT others(2): Show |
intron_variant | MODIFIER | HG02486.hp2 HG02572.hp2 NA18981.hp2 others(2): Show |
a0001a0003a0004 | a0001c0001a0003c0003a0004c0004 | a0001c0001t0002a0003c0003t0001a0004c0004t0001 | a0001c0001t0002g0015 a0001c0001t0002g0018 a0001c0001t0002g0020 others(2): Show |
5 | 274 | 0.0183 | 9 | c.997 others(28): Show |
LRRIQ3 | ENSG00000162620.16 | transcript | ENST00000354431.9 | protein_coding | 6/7 | chr1 | TogoVar | |||||||
LRRIQ4_chr3_169807870_169842773 | 169830377 | G | GAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00099.hp2 HG01258.hp2 HG01261.hp1 others(14): Show |
a0001 | a0001c0001a0001c0009 | a0001c0001t0001a0001c0009t0001 | a0001c0001t0001g0012 a0001c0001t0001g0203 a0001c0001t0001g0210 others(13): Show |
17 | 386 | 0.0440 | 9 | c.119 others(24): Show |
LRRIQ4 | ENSG00000188306.7 | transcript | ENST00000340806.7 | protein_coding | 3/5 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | ||||||
LRRK1_chr15_100914357_101083257 | 100956457 | T | TTTTCTTT others(2): Show |
intron_variant | MODIFIER | NA18983.hp2 NA18990.hp2 NA19012.hp2 others(4): Show |
a0001a0002a0005others(2): Show | a0001c0006a0001c0014a0002c0068others(3): Show | a0001c0006t0199a0001c0014t0010a0002c0068t0013others(4): Show | a0001c0006t0199g0334 a0001c0014t0010g0332 a0002c0068t0013g0331 others(4): Show |
7 | 338 | 0.0207 | 9 | c.98- others(26): Show |
LRRK1 | ENSG00000154237.13 | transcript | ENST00000388948.8 | protein_coding | 2/33 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
LRRK1_chr15_100914357_101083257 | 101058617 | C | CGGGGAGT others(2): Show |
intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(52): Show |
a0001a0002a0004others(4): Show | a0001c0002a0001c0004a0001c0029others(16): Show | a0001c0002t0001a0001c0002t0027a0001c0002t0029others(47): Show | a0001c0002t0001g0199 a0001c0002t0001g0243 a0001c0002t0001g0253 others(52): Show |
55 | 338 | 0.1627 | 9 | c.467 others(26): Show |
LRRK1 | ENSG00000154237.13 | transcript | ENST00000388948.8 | protein_coding | 29/33 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
LRRK2_chr12_40219997_40374285 | 40280621 | T | TTAAATAA others(2): Show |
intron_variant | MODIFIER | HG00323.hp1 HG00639.hp2 HG00738.hp1 others(37): Show |
a0001a0002a0003others(1): Show | a0001c0005a0002c0001a0002c0009others(5): Show | a0001c0005t0002a0002c0001t0001a0002c0009t0001others(8): Show | a0001c0005t0002g0354 a0002c0001t0001g0058 a0002c0001t0001g0059 others(37): Show |
40 | 382 | 0.1047 | 9 | c.224 others(28): Show |
LRRK2 | ENSG00000188906.17 | transcript | ENST00000298910.12 | protein_coding | 18/50 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | ||||||
LRRN2_chr1_204612170_204690738 | 204631256 | C | CAATCTAA others(2): Show |
intron_variant | MODIFIER | HG03130.hp1 HG03239.hp1 HG03491.hp1 others(3): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0002t0002 | a0001c0001t0001g0217 a0001c0001t0001g0325 a0001c0002t0002g0029 others(3): Show |
6 | 328 | 0.0183 | 9 | c.-22 others(30): Show |
LRRN2 | ENSG00000170382.12 | transcript | ENST00000367177.4 | protein_coding | 1/1 | chr1 | TogoVar | |||||||
LRRN2_chr1_204612170_204690738 | 204642530 | C | CAAGGGAG others(2): Show |
intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(167): Show |
a0001a0002a0003others(5): Show | a0001c0001a0001c0002a0001c0010others(10): Show | a0001c0001t0001a0001c0002t0001a0001c0002t0002others(14): Show | a0001c0001t0001g0019 a0001c0001t0001g0033 a0001c0001t0001g0062 others(166): Show |
170 | 328 | 0.5183 | 9 | c.-22 others(30): Show |
LRRN2 | ENSG00000170382.12 | transcript | ENST00000367177.4 | protein_coding | 1/1 | chr1 | TogoVar | |||||||
LRRN2_chr1_204612170_204690738 | 204652271 | G | GCCCCCCC others(2): Show |
intron_variant | MODIFIER | HG02280.hp1 HG02895.hp2 HG02897.hp1 others(8): Show |
a0001 | a0001c0001a0001c0007 | a0001c0001t0001a0001c0001t0005a0001c0001t0010others(1): Show | a0001c0001t0001g0018 a0001c0001t0001g0214 a0001c0001t0001g0215 others(8): Show |
11 | 328 | 0.0335 | 9 | c.-22 others(30): Show |
LRRN2 | ENSG00000170382.12 | transcript | ENST00000367177.4 | protein_coding | 1/1 | chr1 | TogoVar | |||||||
LRRTM1_chr2_80296878_80309752 | 80306375 | C | CTTTTTTT others(2): Show |
upstream_gene_variant | MODIFIER | NA18941.hp1 NA18952.hp1 NA18957.hp1 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0001 | 4 | 418 | 0.0096 | 9 | c.-22 others(20): Show |
LRRTM1 | ENSG00000162951.11 | transcript | ENST00000295057.4 | protein_coding | 1624 | chr2 | TogoVar | |||||||
LRRTM1_chr2_80296878_80309752 | 80306400 | T | TTTTCTTT others(2): Show |
upstream_gene_variant | MODIFIER | HG01169.hp1 HG01169.hp2 HG01255.hp2 others(5): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0004a0002c0002t0001 | a0001c0001t0001g0001 a0001c0001t0004g0006 a0002c0002t0001g0002 |
8 | 418 | 0.0191 | 9 | c.-23 others(20): Show |
LRRTM1 | ENSG00000162951.11 | transcript | ENST00000295057.4 | protein_coding | 1649 | chr2 | TogoVar | |||||||
LRRTM3_chr10_66921036_67106551 | 66996649 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00735.hp2 HG01358.hp2 HG03017.hp1 others(9): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0019others(1): Show | a0001c0001t0001g0027 a0001c0001t0001g0178 a0001c0001t0001g0199 others(9): Show |
12 | 294 | 0.0408 | 9 | c.153 others(30): Show |
LRRTM3 | ENSG00000198739.11 | transcript | ENST00000361320.5 | protein_coding | 2/2 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | ||||||
LRRTM3_chr10_66921036_67106551 | 67005682 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00738.hp1 HG01496.hp1 HG01993.hp1 others(18): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0003a0001c0001t0005others(1): Show | a0001c0001t0001g0031 a0001c0001t0001g0128 a0001c0001t0001g0149 others(18): Show |
21 | 294 | 0.0714 | 9 | c.153 others(30): Show |
LRRTM3 | ENSG00000198739.11 | transcript | ENST00000361320.5 | protein_coding | 2/2 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | ||||||
LRRTM4_chr2_76742685_77527376 | 76936954 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00735.hp2 HG01109.hp1 HG01891.hp1 others(6): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(1): Show | a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0002g0021 others(6): Show |
9 | 128 | 0.0703 | 9 | c.155 others(32): Show |
LRRTM4 | ENSG00000176204.14 | transcript | ENST00000409884.6 | protein_coding | 3/3 | chr2 | TogoVar | |||||||
LRRTM4_chr2_76742685_77527376 | 77075914 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG01109.hp2 HG01346.hp2 HG01884.hp2 others(2): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0003a0001c0001t0004 | a0001c0001t0002g0121 a0001c0001t0002g0127 a0001c0001t0003g0042 others(2): Show |
5 | 128 | 0.0391 | 9 | c.155 others(32): Show |
LRRTM4 | ENSG00000176204.14 | transcript | ENST00000409884.6 | protein_coding | 3/3 | chr2 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116060198 | G | GTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG01891.hp2 HG02572.hp2 HG02622.hp1 others(8): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0003a0001c0001t0011others(8): Show | a0001c0001t0002g0027 a0001c0001t0003g0007 a0001c0001t0011g0095 others(8): Show |
11 | 104 | 0.1058 | 9 | c.388 others(28): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 2/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116078277 | C | CATTTATT others(2): Show |
intron_variant | MODIFIER | HG02109.hp1 NA18906.hp2 |
a0001 | a0001c0001 | a0001c0001t0006a0001c0001t0068 | a0001c0001t0006g0065 a0001c0001t0068g0091 |
2 | 104 | 0.0192 | 9 | c.388 others(26): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 2/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116221150 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00558.hp2 HG01257.hp1 HG01261.hp1 others(24): Show |
a0001a0003 | a0001c0001a0001c0002a0001c0006others(1): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(20): Show | a0001c0001t0001g0016 a0001c0001t0001g0033 a0001c0001t0001g0035 others(24): Show |
27 | 104 | 0.2596 | 9 | c.156 others(30): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 1/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116232699 | C | CTTTTTTT others(2): Show |
intron_variant | MODIFIER | HG00558.hp2 HG01106.hp2 NA18906.hp2 others(2): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0014others(2): Show | a0001c0001t0001g0040 a0001c0001t0002g0053 a0001c0001t0014g0092 others(2): Show |
5 | 104 | 0.0481 | 9 | c.156 others(30): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 1/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116290734 | A | AAATAATA others(2): Show |
intron_variant | MODIFIER | HG01884.hp1 HG03139.hp1 NA18906.hp2 |
a0001 | a0001c0001 | a0001c0001t0009a0001c0001t0048a0001c0001t0068 | a0001c0001t0009g0099 a0001c0001t0048g0100 a0001c0001t0068g0091 |
3 | 104 | 0.0289 | 9 | c.155 others(30): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 1/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116385920 | T | TTACTACT others(2): Show |
intron_variant | MODIFIER | HG01891.hp2 HG02055.hp1 HG02717.hp2 others(2): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0004a0001c0001t0007others(2): Show | a0001c0001t0002g0027 a0001c0001t0004g0024 a0001c0001t0007g0071 others(2): Show |
5 | 104 | 0.0481 | 9 | c.155 others(28): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 1/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116415225 | T | TATTATAA others(2): Show |
intron_variant | MODIFIER | HG00558.hp2 HG00733.hp2 HG00735.hp1 others(80): Show |
a0001a0002a0003 | a0001c0001a0001c0002a0001c0005others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(60): Show | a0001c0001t0001g0016 a0001c0001t0001g0033 a0001c0001t0001g0035 others(80): Show |
83 | 104 | 0.7981 | 9 | c.155 others(28): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 1/6 | chr3 | TogoVar | |||||||
LSAMP_chr3_115797374_116450487 | 116444392 | A | ACACACAC others(2): Show |
intron_variant | MODIFIER | HG02572.hp1 HG02886.hp2 HG02922.hp1 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0011a0001c0001t0017others(1): Show | a0001c0001t0002g0094 a0001c0001t0011g0095 a0001c0001t0017g0097 others(1): Show |
4 | 104 | 0.0385 | 9 | c.155 others(24): Show |
LSAMP | ENSG00000185565.13 | transcript | ENST00000490035.7 | protein_coding | 1/6 | chr3 | TogoVar | |||||||
LSG1_chr3_194635791_194677191 | 194667923 | C | CAAAAAAA others(2): Show |
intron_variant | MODIFIER | HG00544.hp2 HG01081.hp2 HG01243.hp2 others(13): Show |
a0001a0002 | a0001c0001a0002c0006 | a0001c0001t0003a0001c0001t0006a0001c0001t0011others(7): Show | a0001c0001t0003g0256 a0001c0001t0003g0258 a0001c0001t0003g0259 others(13): Show |
16 | 408 | 0.0392 | 9 | c.227 others(26): Show |
LSG1 | ENSG00000041802.11 | transcript | ENST00000265245.10 | protein_coding | 2/13 | chr3 | TogoVar | |||||||
LSM14A_chr19_34167504_34234288 | 34177725 | A | AAAAAATT others(2): Show |
intron_variant | MODIFIER | HG00280.hp2 HG00733.hp1 HG00741.hp1 others(70): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0004a0001c0001t0018others(2): Show | a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0009 others(68): Show |
73 | 315 | 0.2318 | 9 | c.121 others(26): Show |
LSM14A | ENSG00000257103.9 | transcript | ENST00000544216.8 | protein_coding | 1/9 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
LSM2_chr6_31792396_31811966 | 31809556 | A | ACACACAC others(2): Show |
upstream_gene_variant | MODIFIER | HG02615.hp1 NA18522.hp2 NA18977.hp2 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0025 a0001c0001t0001g0076 a0001c0001t0001g0157 |
3 | 427 | 0.0070 | 9 | c.-28 others(20): Show |
LSM2 | ENSG00000204392.11 | transcript | ENST00000375661.6 | protein_coding | 2591 | chr6 | TogoVar | |||||||
LSM3_chr3_14173817_14206122 | 14205424 | T | TTTATTAT others(2): Show |
downstream_gene_variant | MODIFIER | HG00423.hp1 HG00438.hp2 HG00639.hp2 others(70): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(16): Show | a0001c0001t0001g0020 a0001c0001t0001g0049 a0001c0001t0001g0052 others(51): Show |
73 | 396 | 0.1843 | 9 | c.*73 others(20): Show |
LSM3 | ENSG00000170860.4 | transcript | ENST00000306024.4 | protein_coding | 4303 | chr3 | TogoVar |