Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	distance	chr	external
ABCC9_chr12_21792389_21946426	21944518	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp2 NA18522.hp2 HG02109.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0131 a0001c0001t0005g0175 a0001c0001t0001g0131 a0001c0001t0005g0175	2	212	0.0094	0	c.-34 others(5): Show c.-3455G>C	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	3092	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21944897	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG02040.hp2 HG02129.hp1 others(9): Show HG00408.hp1 HG02040.hp2 HG02129.hp1 HG03491.hp1 NA18747.hp1 NA18959.hp1 NA18962.hp2 NA18967.hp1 NA18984.hp2 NA18991.hp2 NA19006.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0001 a0001c0001t0010 a0001c0010t0001 a0001c0001t0001 a0001c0001t0010 a0001c0010t0001	a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 others(9): Show a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0094 a0001c0001t0001g0108 a0001c0001t0010g0062 a0001c0001t0010g0064 a0001c0010t0001g0054	12	212	0.0566	0	c.-38 others(5): Show c.-3834C>A	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	3471	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945148	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01169.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0105 a0001c0001t0003g0105	1	212	0.0047	0	c.-40 others(5): Show c.-4085T>C	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	3722	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945207	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0104 a0001c0004t0001g0104	1	212	0.0047	0	c.-41 others(5): Show c.-4144G>A	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	3781	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945359	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18952.hp1 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	212	0.0047	0	c.-42 others(5): Show c.-4296G>A	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	3933	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945436	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0109	1	212	0.0047	0	c.-43 others(5): Show c.-4373A>G	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4010	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945491	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0009 a0001c0003t0009	a0001c0003t0009g0209 a0001c0003t0009g0209	1	212	0.0047	0	c.-44 others(5): Show c.-4428T>C	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4065	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945529	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0003 a0003	a0003c0012 a0003c0012	a0003c0012t0001 a0003c0012t0001	a0003c0012t0001g0195 a0003c0012t0001g0195	1	212	0.0047	0	c.-44 others(5): Show c.-4466G>A	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4103	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945616	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0110 a0001c0001t0001g0110	1	212	0.0047	0	c.-45 others(5): Show c.-4553C>A	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4190	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945648	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02074.hp2 NA18981.hp2 NA18984.hp1 others(1): Show HG02074.hp2 NA18981.hp2 NA18984.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0015 a0001c0001t0001 a0001c0001t0015	a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 others(1): Show a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0015g0170	4	212	0.0189	0	c.-45 others(5): Show c.-4585A>C	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4222	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945876	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00323.hp2 others(62): Show HG00140.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00438.hp2 HG00558.hp1 HG00738.hp1 HG01074.hp1 HG01106.hp2 HG01175.hp2 HG01261.hp1 HG01496.hp1 HG01934.hp1 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp2 HG02074.hp1 HG02074.hp2 HG02109.hp2 HG02129.hp2 HG02132.hp2 HG02145.hp1 HG02300.hp2 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02630.hp1 HG02698.hp2 HG02735.hp2 HG02896.hp2 HG02922.hp1 HG02970.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03579.hp2 HG03704.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18612.hp2 NA18947.hp2 NA18960.hp1 NA18964.hp1 NA18978.hp2 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18988.hp1 NA18988.hp2 NA18991.hp1 NA18992.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp2 NA19065.hp2 NA19091.hp2 NA20300.hp2 NA20752.hp2 NA20905.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0004c0011	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0020 a0001c0001t0024 a0001c0003t0016 a0001c0004t0001 a0004c0011t0001	a0001c0001t0001g0004 a0001c0001t0001g0040 a0001c0001t0001g0050 others(62): Show a0001c0001t0001g0004 a0001c0001t0001g0040 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0066 a0001c0001t0001g0069 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0098 a0001c0001t0001g0121 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0131 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0165 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0174 a0001c0001t0001g0177 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0207 a0001c0001t0003g0141 a0001c0001t0003g0147 a0001c0001t0003g0158 a0001c0001t0005g0175 a0001c0001t0006g0142 a0001c0001t0013g0092 a0001c0001t0015g0170 a0001c0001t0017g0143 a0001c0001t0020g0140 a0001c0001t0024g0211 a0001c0003t0016g0173 a0001c0004t0001g0135 a0004c0011t0001g0149	65	212	0.3066	0	c.-48 others(5): Show c.-4813C>T	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4450	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21945885	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	212	0.0047	0	c.-48 others(5): Show c.-4822G>C	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4459	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21946171	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00558.hp2 others(54): Show HG00140.hp1 HG00438.hp1 HG00558.hp2 HG00621.hp2 HG00639.hp2 HG00738.hp2 HG01074.hp2 HG01106.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01255.hp2 HG01261.hp2 HG01346.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01934.hp2 HG02027.hp1 HG02257.hp1 HG02300.hp1 HG02615.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02735.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02976.hp1 HG03017.hp2 HG03098.hp1 HG03195.hp1 HG03209.hp1 HG03669.hp1 HG06807.hp2 NA18747.hp2 NA18960.hp2 NA18962.hp1 NA18964.hp2 NA18967.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18982.hp2 NA18992.hp2 NA19009.hp2 NA19090.hp1 NA20752.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0001c0008 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 a0001c0001t0018 a0001c0001t0021 a0001c0002t0012 a0001c0002t0023 a0001c0004t0001 a0001c0006t0001 a0001c0008t0001 a0001c0009t0001	a0001c0001t0001g0001 a0001c0001t0001g0052 a0001c0001t0001g0053 others(53): Show a0001c0001t0001g0001 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0164 a0001c0001t0001g0167 a0001c0001t0001g0181 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0190 a0001c0001t0001g0193 a0001c0001t0002g0128 a0001c0001t0003g0095 a0001c0001t0003g0105 a0001c0001t0005g0067 a0001c0001t0008g0188 a0001c0001t0008g0189 a0001c0001t0011g0068 a0001c0001t0011g0120 a0001c0001t0018g0003 a0001c0001t0021g0122 a0001c0002t0012g0002 a0001c0002t0023g0182 a0001c0004t0001g0104 a0001c0004t0001g0119 a0001c0006t0001g0042 a0001c0008t0001g0179 a0001c0009t0001g0101	57	212	0.2689	0	c.-51 others(5): Show c.-5108G>A	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4745	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21946293	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0152 a0001c0001t0001g0152	1	212	0.0047	0	c.-52 others(5): Show c.-5230C>T	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4867	chr12	TogoVar
ABCC9_chr12_21792389_21946426	21946362	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03017.hp1 HG03209.hp2 HG03579.hp1 others(2): Show HG03017.hp1 HG03209.hp2 HG03579.hp1 NA19030.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 others(2): Show a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0030 a0001c0001t0004g0023	5	212	0.0236	0	c.-52 others(5): Show c.-5299T>C	ABCC9	ENSG00000069431.14	transcript	ENST00000261200.9	protein_coding	4936	chr12	TogoVar
ABCD1_chrX_153719856_153749755	153720044	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00741.hp2 HG01175.hp1 others(21): Show HG00280.hp1 HG00741.hp2 HG01175.hp1 HG01884.hp2 HG02257.hp2 HG02451.hp2 HG02523.hp1 HG02630.hp1 HG02683.hp2 HG03195.hp2 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 NA18979.hp1 NA18979.hp2 NA19080.hp2 NA19084.hp1 NA19085.hp1 NA20805.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 others(3): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0002t0004 a0001c0002t0017 a0001c0006t0004	a0001c0001t0004g0006 a0001c0001t0005g0082 a0001c0001t0007g0010 others(11): Show a0001c0001t0004g0006 a0001c0001t0005g0082 a0001c0001t0007g0010 a0001c0002t0004g0006 a0001c0002t0004g0018 a0001c0002t0004g0069 a0001c0002t0004g0071 a0001c0002t0004g0072 a0001c0002t0004g0073 a0001c0002t0004g0074 a0001c0002t0004g0075 a0001c0002t0004g0076 a0001c0002t0017g0070 a0001c0006t0004g0006	24	285	0.0842	0	c.-52 others(5): Show c.-5223G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4812	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720130	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0096 a0001c0001t0003g0096	1	285	0.0035	0	c.-51 others(5): Show c.-5137G>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4726	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720199	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0096 a0001c0001t0003g0096	1	285	0.0035	0	c.-50 others(5): Show c.-5068G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4657	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720258	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG02451.hp1 HG01243.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0024 a0001c0001t0002g0024	2	285	0.0070	0	c.-50 others(5): Show c.-5009C>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4598	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720294	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02145.hp1 HG02486.hp1 HG01884.hp1 HG02145.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0094 a0001c0001t0003g0095 a0001c0001t0003g0096 a0001c0001t0003g0094 a0001c0001t0003g0095 a0001c0001t0003g0096	3	285	0.0105	0	c.-49 others(5): Show c.-4973C>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4562	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720367	C C	CT CT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 NA19063.hp1 NA19084.hp2 HG00738.hp1 NA19063.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0002 a0001c0001t0002g0001 a0001c0001t0001g0002 a0001c0001t0002g0001	3	285	0.0105	1	c.-49 others(12): Show c.-4900_-4899insT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4488	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720367	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00741.hp2 HG01175.hp1 others(22): Show HG00280.hp1 HG00741.hp2 HG01175.hp1 HG01884.hp2 HG02015.hp1 HG02257.hp2 HG02451.hp2 HG02523.hp1 HG02630.hp1 HG02683.hp2 HG03195.hp2 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 NA18979.hp1 NA18979.hp2 NA19080.hp2 NA19084.hp1 NA19085.hp1 NA20805.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 others(4): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0002t0004 a0001c0002t0017 a0001c0006t0004	a0001c0001t0002g0001 a0001c0001t0004g0006 a0001c0001t0005g0082 others(12): Show a0001c0001t0002g0001 a0001c0001t0004g0006 a0001c0001t0005g0082 a0001c0001t0007g0010 a0001c0002t0004g0006 a0001c0002t0004g0018 a0001c0002t0004g0069 a0001c0002t0004g0071 a0001c0002t0004g0072 a0001c0002t0004g0073 a0001c0002t0004g0074 a0001c0002t0004g0075 a0001c0002t0004g0076 a0001c0002t0017g0070 a0001c0006t0004g0006	25	285	0.0877	-1	c.-48 others(6): Show c.-4899delT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4488	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720473	T T	TC TC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	1	c.-47 others(12): Show c.-4794_-4793insC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4382	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720522	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	0	c.-47 others(5): Show c.-4745G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4334	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720647	A A	AG AG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	1	c.-46 others(12): Show c.-4620_-4619insG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4208	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720689	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18971.hp1 NA18983.hp1 NA19011.hp1 NA18971.hp1 NA18983.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0051 a0001c0001t0002g0001 a0001c0001t0002g0051	3	285	0.0105	0	c.-45 others(5): Show c.-4578G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4167	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720765	T T	TC TC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	1	c.-45 others(12): Show c.-4502_-4501insC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4090	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720796	T T	TG TG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	1	c.-44 others(12): Show c.-4471_-4470insG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4059	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720812	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-1	c.-44 others(6): Show c.-4454delT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4043	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720829	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-1	c.-44 others(6): Show c.-4437delG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4026	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720843	G G	GCTC GCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	3	c.-44 others(14): Show c.-4424_-4423insCTC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4012	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720844	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-44 others(5): Show c.-4423T>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4012	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720845	A A	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-44 others(5): Show c.-4422A>C	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4011	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720850	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-44 others(5): Show c.-4417C>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4006	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720853	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-44 others(5): Show c.-4414T>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	4003	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720860	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-44 others(5): Show c.-4407T>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3996	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720863	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-44 others(5): Show c.-4404C>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3993	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720868	TCACCGAT others(1): Show TCACCGATG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-8	c.-43 others(19): Show c.-4398_-4391delCACCGATG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3987	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720880	A A	AC AC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	1	c.-43 others(12): Show c.-4387_-4386insC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3975	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720882	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-43 others(5): Show c.-4385C>G	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3974	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720885	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-43 others(5): Show c.-4382C>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3971	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720886	A A	AG AG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	1	c.-43 others(12): Show c.-4381_-4380insG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3969	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720894	GAC GAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-2	c.-43 others(13): Show c.-4372_-4371delAC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3961	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720902	GAACC GAACC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-4	c.-43 others(15): Show c.-4364_-4361delAACC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3953	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720910	AAGAAG AAGAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-5	c.-43 others(16): Show c.-4356_-4352delAGAAG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3945	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720917	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-43 others(5): Show c.-4350T>G	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3939	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720922	CCA CCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-2	c.-43 others(13): Show c.-4344_-4343delCA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3933	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720936	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-1	c.-43 others(6): Show c.-4330delA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3919	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720941	CCA CCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-2	c.-43 others(13): Show c.-4325_-4324delCA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3914	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720944	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	0	c.-43 others(5): Show c.-4323C>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3912	chrX	TogoVar

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