Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	distance	chr	external
ABCD1_chrX_153719856_153749755	153720947	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	285	0.0035	-1	c.-43 others(6): Show c.-4319delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3908	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153720950	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0004 a0001c0001t0012g0004	1	285	0.0035	0	c.-43 others(5): Show c.-4317G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3906	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721013	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0090 a0001c0001t0005g0090	1	285	0.0035	0	c.-42 others(5): Show c.-4254A>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3843	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721384	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0047 a0001c0001t0002g0047	1	285	0.0035	0	c.-38 others(5): Show c.-3883C>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3472	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721390	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0077	1	285	0.0035	0	c.-38 others(5): Show c.-3877C>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3466	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721435	C C	CA CA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp2 HG02074.hp1 others(17): Show HG01891.hp1 HG01891.hp2 HG02074.hp1 HG02280.hp1 HG03209.hp1 HG03516.hp2 HG04184.hp1 HG04184.hp2 NA18522.hp1 NA18949.hp1 NA18959.hp1 NA18960.hp1 NA18985.hp1 NA19000.hp1 NA19006.hp1 NA19030.hp2 NA19060.hp1 NA19079.hp1 NA19084.hp1 NA19090.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0012 a0001c0001 a0001c0002 a0002c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0016 a0001c0002t0004 a0002c0012t0011	a0001c0001t0001g0002 a0001c0001t0001g0041 a0001c0001t0001g0052 others(11): Show a0001c0001t0001g0002 a0001c0001t0001g0041 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0063 a0001c0001t0002g0001 a0001c0001t0002g0012 a0001c0001t0003g0087 a0001c0001t0005g0016 a0001c0001t0005g0020 a0001c0001t0016g0078 a0001c0002t0004g0006 a0001c0002t0004g0075 a0002c0012t0011g0025	20	285	0.0702	1	c.-38 others(12): Show c.-3832_-3831insA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3420	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721435	C C	CAA CAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	285	0.0035	2	c.-38 others(13): Show c.-3832_-3831insAA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3420	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721435	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp2 HG02897.hp2 NA18984.hp1 HG02615.hp2 HG02897.hp2 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0057 a0001c0001t0002g0001 a0001c0001t0003g0021 a0001c0001t0001g0057 a0001c0001t0002g0001 a0001c0001t0003g0021	3	285	0.0105	-1	c.-38 others(6): Show c.-3831delA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3420	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721455	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	0	c.-38 others(5): Show c.-3812G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3401	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721476	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02559.hp2 HG02615.hp1 others(13): Show HG02257.hp1 HG02559.hp2 HG02615.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02896.hp1 HG02897.hp1 HG02970.hp2 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03516.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0012 a0001c0001t0003 a0001c0001t0012	a0001c0001t0003g0004 a0001c0001t0003g0022 a0001c0001t0003g0083 others(2): Show a0001c0001t0003g0004 a0001c0001t0003g0022 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0012g0004	16	285	0.0561	0	c.-37 others(5): Show c.-3791C>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3380	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721497	C C	CT CT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp1 NA18985.hp1 NA18955.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0010 a0001c0001t0002 a0001c0001t0010	a0001c0001t0002g0001 a0001c0001t0010g0001 a0001c0001t0002g0001 a0001c0001t0010g0001	2	285	0.0070	1	c.-37 others(12): Show c.-3770_-3769insT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3358	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721497	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0013 a0003c0004t0013	a0003c0004t0013g0062 a0003c0004t0013g0062	1	285	0.0035	-1	c.-37 others(6): Show c.-3769delT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3358	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721518	CAG CAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0032 a0001c0001t0003g0032	1	285	0.0035	-2	c.-37 others(13): Show c.-3748_-3747delAG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3337	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721584	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	285	0.0035	0	c.-36 others(5): Show c.-3683C>G	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3272	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721613	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp1 HG02895.hp1 HG02897.hp2 others(3): Show HG02280.hp1 HG02895.hp1 HG02897.hp2 HG02976.hp1 HG03225.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0003 a0001c0011t0003 a0001c0001t0003 a0001c0011t0003	a0001c0001t0003g0021 a0001c0001t0003g0084 a0001c0001t0003g0086 others(2): Show a0001c0001t0003g0021 a0001c0001t0003g0084 a0001c0001t0003g0086 a0001c0001t0003g0087 a0001c0011t0003g0088	6	285	0.0211	0	c.-36 others(5): Show c.-3654C>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3243	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721741	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03710.hp1 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0055 a0001c0001t0002g0055	1	285	0.0035	0	c.-35 others(5): Show c.-3526A>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3115	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721791	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	285	0.0035	0	c.-34 others(5): Show c.-3476G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3065	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153721849	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(281): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp1 NA18992.hp2 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0006	a0001c0001 a0001c0002 a0001c0006 others(9): Show a0001c0001 a0001c0002 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0011 a0002c0012 a0003c0004 a0004c0010 a0005c0005 a0006c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(25): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0002t0003 a0001c0002t0004 a0001c0002t0017 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0009t0001 a0001c0011t0003 a0002c0012t0011 a0003c0004t0013 a0004c0010t0003 a0005c0005t0001 a0006c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 others(106): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0060 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0077 a0001c0001t0002g0001 a0001c0001t0002g0009 a0001c0001t0002g0012 a0001c0001t0002g0014 a0001c0001t0002g0017 a0001c0001t0002g0024 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0036 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0051 a0001c0001t0002g0053 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0058 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0003g0004 a0001c0001t0003g0011 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0031 a0001c0001t0003g0032 a0001c0001t0003g0067 a0001c0001t0003g0068 a0001c0001t0003g0083 a0001c0001t0003g0084 a0001c0001t0003g0085 a0001c0001t0003g0086 a0001c0001t0003g0087 a0001c0001t0003g0091 a0001c0001t0003g0093 a0001c0001t0003g0094 a0001c0001t0003g0095 a0001c0001t0003g0096 a0001c0001t0004g0006 a0001c0001t0005g0002 a0001c0001t0005g0016 a0001c0001t0005g0019 a0001c0001t0005g0020 a0001c0001t0005g0079 a0001c0001t0005g0080 a0001c0001t0005g0082 a0001c0001t0005g0089 a0001c0001t0005g0090 a0001c0001t0006g0008 a0001c0001t0007g0010 a0001c0001t0008g0009 a0001c0001t0008g0013 a0001c0001t0009g0002 a0001c0001t0010g0001 a0001c0001t0012g0004 a0001c0001t0014g0009 a0001c0001t0015g0044 a0001c0001t0016g0078 a0001c0001t0018g0008 a0001c0002t0003g0081 a0001c0002t0004g0006 a0001c0002t0004g0018 a0001c0002t0004g0069 a0001c0002t0004g0071 a0001c0002t0004g0072 a0001c0002t0004g0073 a0001c0002t0004g0074 a0001c0002t0004g0075 a0001c0002t0004g0076 a0001c0002t0017g0070 a0001c0006t0004g0006 a0001c0007t0001g0035 a0001c0008t0001g0002 a0001c0009t0001g0002 a0001c0011t0003g0088 a0002c0012t0011g0025 a0003c0004t0013g0062 a0004c0010t0003g0092 a0005c0005t0001g0059 a0006c0003t0001g0002	284	285	0.9965	-1	c.-34 others(6): Show c.-3417delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	3006	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722094	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18947.hp1 NA18948.hp1 NA18951.hp1 others(5): Show NA18947.hp1 NA18948.hp1 NA18951.hp1 NA18962.hp1 NA18992.hp2 NA19005.hp1 NA19067.hp1 NA19088.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0013 a0001c0001t0001 a0003c0004t0013	a0001c0001t0001g0002 a0001c0001t0001g0043 a0001c0001t0001g0049 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0043 a0001c0001t0001g0049 a0003c0004t0013g0062	8	285	0.0281	0	c.-31 others(5): Show c.-3173G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2762	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722154	TAAG TAAG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02559.hp2 HG02615.hp1 others(13): Show HG02257.hp1 HG02559.hp2 HG02615.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02896.hp1 HG02897.hp1 HG02970.hp2 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03516.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0012 a0001c0001t0003 a0001c0001t0012	a0001c0001t0003g0004 a0001c0001t0003g0022 a0001c0001t0003g0083 others(2): Show a0001c0001t0003g0004 a0001c0001t0003g0022 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0012g0004	16	285	0.0561	-3	c.-31 others(14): Show c.-3112_-3110delAAG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2701	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722308	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0078 a0001c0001t0016g0078	1	285	0.0035	0	c.-29 others(5): Show c.-2959G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2548	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722407	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0006 a0001c0002t0004g0006	1	285	0.0035	0	c.-28 others(5): Show c.-2860A>G	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2449	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722549	G G	GA GA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp1 NA19067.hp1 HG03098.hp1 NA19067.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0002 a0001c0001t0003g0004 a0001c0001t0001g0002 a0001c0001t0003g0004	2	285	0.0070	1	c.-27 others(12): Show c.-2718_-2717insA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2306	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722563	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-27 others(6): Show c.-2703delA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2292	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722741	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02895.hp1 HG02897.hp2 HG02976.hp1 HG02895.hp1 HG02897.hp2 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0021 a0001c0001t0003g0084 a0001c0001t0003g0021 a0001c0001t0003g0084	3	285	0.0105	0	c.-25 others(5): Show c.-2526G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2115	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722759	G G	GT GT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	1	c.-25 others(12): Show c.-2508_-2507insT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2096	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722765	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-25 others(6): Show c.-2501delG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2090	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722794	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-24 others(6): Show c.-2472delT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	2061	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722866	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-24 others(6): Show c.-2400delG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1989	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722969	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01257.hp2 HG01258.hp1 HG01981.hp1 others(1): Show HG01257.hp2 HG01258.hp1 HG01981.hp1 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	4	285	0.0140	0	c.-22 others(5): Show c.-2298A>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1887	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722981	CCT CCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-2	c.-22 others(13): Show c.-2285_-2284delCT	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1874	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153722984	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	0	c.-22 others(5): Show c.-2283G>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1872	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723002	C C	CA CA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	1	c.-22 others(12): Show c.-2265_-2264insA	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1853	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723016	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-22 others(6): Show c.-2250delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1839	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723070	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	0	c.-21 others(5): Show c.-2197T>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1786	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723070	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-21 others(6): Show c.-2196delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1785	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723101	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-21 others(6): Show c.-2165delG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1754	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723109	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02109.hp2 HG02258.hp1 others(17): Show HG02109.hp1 HG02109.hp2 HG02258.hp1 HG02280.hp1 HG02572.hp1 HG02622.hp1 HG02647.hp1 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02976.hp1 HG03130.hp1 NA18943.hp1 NA18989.hp1 NA18994.hp1 NA19057.hp2 NA19068.hp1 NA19081.hp2 NA19090.hp1 NA20129.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0010 a0001c0001 a0004c0010	a0001c0001t0003 a0001c0001t0006 a0001c0001t0018 others(1): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0018 a0004c0010t0003	a0001c0001t0003g0011 a0001c0001t0003g0021 a0001c0001t0003g0023 others(9): Show a0001c0001t0003g0011 a0001c0001t0003g0021 a0001c0001t0003g0023 a0001c0001t0003g0068 a0001c0001t0003g0084 a0001c0001t0003g0086 a0001c0001t0003g0087 a0001c0001t0003g0091 a0001c0001t0003g0093 a0001c0001t0006g0008 a0001c0001t0018g0008 a0004c0010t0003g0092	20	285	0.0702	0	c.-21 others(5): Show c.-2158G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1747	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723306	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0032 a0001c0001t0003g0032	1	285	0.0035	0	c.-19 others(5): Show c.-1961G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1550	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723309	CG CG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0002 a0002	a0002c0012 a0002c0012	a0002c0012t0011 a0002c0012t0011	a0002c0012t0011g0025 a0002c0012t0011g0025	1	285	0.0035	-1	c.-19 others(6): Show c.-1957delG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1546	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723443	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01169.hp2 HG02723.hp1 HG03017.hp1 HG01169.hp2 HG02723.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	3	285	0.0105	0	c.-18 others(5): Show c.-1824T>G	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1413	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723451	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-18 others(6): Show c.-1815delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1404	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723537	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-17 others(6): Show c.-1729delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1318	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723545	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0068 a0001c0001t0003g0068	1	285	0.0035	0	c.-17 others(5): Show c.-1722G>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1311	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723575	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-16 others(6): Show c.-1691delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1280	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723659	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-16 others(6): Show c.-1607delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1196	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723742	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	285	0.0035	0	c.-15 others(5): Show c.-1525C>T	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1114	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723743	A A	AG AG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0002 a0002	a0002c0012 a0002c0012	a0002c0012t0011 a0002c0012t0011	a0002c0012t0011g0025 a0002c0012t0011g0025	1	285	0.0035	1	c.-15 others(12): Show c.-1524_-1523insG	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1112	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723757	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0059 a0005c0005t0001g0059	1	285	0.0035	-1	c.-15 others(6): Show c.-1509delC	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1098	chrX	TogoVar
ABCD1_chrX_153719856_153749755	153723771	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0082 a0001c0001t0005g0082	1	285	0.0035	0	c.-14 others(5): Show c.-1496C>A	ABCD1	ENSG00000101986.12	transcript	ENST00000218104.6	protein_coding	1085	chrX	TogoVar

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