Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Select column to sort.

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	distance	chr	external
ABCG4_chr11_119144052_119167653	119146884	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0086 a0001c0001t0003g0086	1	388	0.0026	0	c.-24 others(5): Show c.-2492T>C	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	2168	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147140	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0001 a0001c0011t0001	a0001c0011t0001g0085 a0001c0011t0001g0085	1	388	0.0026	0	c.-22 others(5): Show c.-2236T>C	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1912	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147162	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0015 a0001c0005t0015	a0001c0005t0015g0101 a0001c0005t0015g0101	1	388	0.0026	0	c.-22 others(5): Show c.-2214T>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1890	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147188	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	388	0.0026	0	c.-21 others(5): Show c.-2188G>T	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1864	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147313	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00323.hp1 others(231): Show HG00099.hp2 HG00140.hp2 HG00323.hp1 HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp2 HG01109.hp2 HG01167.hp2 HG01192.hp2 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp2 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01952.hp2 HG02004.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02293.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp2 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03704.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18939.hp1 NA18940.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18964.hp1 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp2 NA18975.hp1 NA18975.hp2 NA18978.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18985.hp1 NA18985.hp2 NA18988.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp2 NA18994.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19007.hp1 NA19007.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp2 NA19060.hp1 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19077.hp1 NA19077.hp2 NA19082.hp2 NA19085.hp1 NA19240.hp2 NA20805.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0005 a0001c0009 others(5): Show a0001c0001 a0001c0005 a0001c0009 a0001c0011 a0001c0012 a0001c0015 a0001c0016 a0005c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0005t0001 a0001c0005t0005 a0001c0005t0015 a0001c0009t0001 a0001c0011t0001 a0001c0012t0001 a0001c0015t0001 a0001c0016t0007 a0005c0006t0001	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0013 others(66): Show a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0044 a0001c0001t0001g0049 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0002g0017 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0002g0087 a0001c0001t0002g0090 a0001c0001t0002g0096 a0001c0001t0003g0003 a0001c0001t0003g0016 a0001c0001t0003g0026 a0001c0001t0003g0028 a0001c0001t0003g0029 a0001c0001t0003g0030 a0001c0001t0003g0040 a0001c0001t0003g0086 a0001c0001t0003g0091 a0001c0001t0003g0095 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0004g0008 a0001c0001t0004g0043 a0001c0001t0005g0026 a0001c0001t0005g0071 a0001c0001t0007g0092 a0001c0001t0007g0094 a0001c0001t0008g0038 a0001c0001t0008g0093 a0001c0001t0011g0037 a0001c0001t0012g0001 a0001c0001t0013g0001 a0001c0001t0014g0001 a0001c0005t0001g0031 a0001c0005t0005g0027 a0001c0005t0015g0101 a0001c0009t0001g0001 a0001c0011t0001g0085 a0001c0012t0001g0019 a0001c0015t0001g0074 a0001c0016t0007g0084 a0005c0006t0001g0075 a0005c0006t0001g0076	234	388	0.6031	0	c.-20 others(5): Show c.-2063T>C	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1739	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147387	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0007 a0001c0016t0007	a0001c0016t0007g0084 a0001c0016t0007g0084	1	388	0.0026	0	c.-19 others(5): Show c.-1989A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1665	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147426	A A	AAGAG AAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp2 HG02109.hp2 HG02486.hp2 others(1): Show HG02055.hp2 HG02109.hp2 HG02486.hp2 NA18953.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0001t0003 a0001c0005t0015 a0001c0001t0002 a0001c0001t0003 a0001c0005t0015	a0001c0001t0002g0039 a0001c0001t0003g0003 a0001c0005t0015g0101 a0001c0001t0002g0039 a0001c0001t0003g0003 a0001c0005t0015g0101	4	388	0.0103	4	c.-19 others(15): Show c.-1950_-1949insAGAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1625	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147426	A A	AAGAGAG AAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG01256.hp2 others(53): Show HG00423.hp1 HG00423.hp2 HG01256.hp2 HG01257.hp2 HG01258.hp2 HG01346.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02056.hp2 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp2 HG02523.hp2 HG02683.hp2 HG02698.hp1 HG02738.hp1 HG02738.hp2 HG03017.hp2 HG03669.hp2 HG03688.hp2 HG03710.hp2 HG03927.hp1 HG03942.hp1 HG04184.hp2 HG04199.hp2 NA18940.hp2 NA18941.hp1 NA18943.hp1 NA18944.hp2 NA18948.hp2 NA18956.hp2 NA18960.hp2 NA18964.hp1 NA18965.hp1 NA18967.hp1 NA18969.hp2 NA18972.hp1 NA18980.hp1 NA18984.hp2 NA18985.hp1 NA18991.hp1 NA18997.hp1 NA19000.hp1 NA19012.hp1 NA19058.hp2 NA19063.hp2 NA19066.hp2 NA19067.hp1 NA19068.hp2 NA20805.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0011	a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0002g0087 others(15): Show a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0002g0087 a0001c0001t0002g0096 a0001c0001t0003g0003 a0001c0001t0003g0016 a0001c0001t0003g0028 a0001c0001t0003g0030 a0001c0001t0003g0040 a0001c0001t0003g0091 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0004g0008 a0001c0001t0004g0043 a0001c0001t0005g0026 a0001c0001t0011g0037	56	388	0.1443	6	c.-19 others(17): Show c.-1950_-1949insAGAGAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1625	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147440	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02572.hp2 HG02622.hp2 others(8): Show HG01884.hp1 HG02572.hp2 HG02622.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03041.hp1 HG03195.hp1 HG03486.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 others(2): Show a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095	11	388	0.0284	0	c.-19 others(5): Show c.-1936A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1612	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147451	AGAAAGAA others(6): Show AGAAAGAAAGAAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp2 HG02723.hp2 HG02818.hp1 others(2): Show HG02257.hp2 HG02723.hp2 HG02818.hp1 HG03209.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0008 a0001c0001t0007 a0001c0001t0008	a0001c0001t0007g0092 a0001c0001t0007g0094 a0001c0001t0008g0038 others(1): Show a0001c0001t0007g0092 a0001c0001t0007g0094 a0001c0001t0008g0038 a0001c0001t0008g0093	5	388	0.0129	-13	c.-19 others(24): Show c.-1924_-1912delGAAAGAAAGAAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1600	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147452	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02572.hp2 HG02622.hp2 others(8): Show HG01884.hp1 HG02572.hp2 HG02622.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03041.hp1 HG03195.hp1 HG03486.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 others(2): Show a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095	11	388	0.0284	0	c.-19 others(5): Show c.-1924G>A	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1600	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147454	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02572.hp2 HG02622.hp2 others(8): Show HG01884.hp1 HG02572.hp2 HG02622.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03041.hp1 HG03195.hp1 HG03486.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 others(2): Show a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095	11	388	0.0284	0	c.-19 others(5): Show c.-1922A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1598	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147463	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp2 HG02809.hp2 HG02895.hp1 others(3): Show HG02572.hp2 HG02809.hp2 HG02895.hp1 HG02897.hp1 HG03195.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095 a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095	6	388	0.0155	-1	c.-19 others(6): Show c.-1912delG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1588	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	G G	GAAAATAA others(1): Show GAAAATAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01256.hp2 HG01257.hp2 HG01258.hp2 others(11): Show HG01256.hp2 HG01257.hp2 HG01258.hp2 HG02056.hp2 HG02074.hp2 HG02132.hp1 HG02523.hp2 HG03017.hp2 HG03927.hp1 HG04184.hp2 NA18956.hp2 NA18969.hp2 NA18997.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0002g0037 a0001c0001t0003g0003 a0001c0001t0003g0028 others(3): Show a0001c0001t0002g0037 a0001c0001t0003g0003 a0001c0001t0003g0028 a0001c0001t0003g0091 a0001c0001t0003g0099 a0001c0001t0004g0008	14	388	0.0361	8	c.-19 others(19): Show c.-1912_-1911insAAAATAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	G G	GAAAATAA others(5): Show GAAAATAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp2 HG03942.hp1 NA18953.hp1 others(2): Show HG02027.hp2 HG03942.hp1 NA18953.hp1 NA18967.hp1 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0003 a0001c0005t0015 a0001c0001t0003 a0001c0005t0015	a0001c0001t0003g0003 a0001c0001t0003g0030 a0001c0005t0015g0101 a0001c0001t0003g0003 a0001c0001t0003g0030 a0001c0005t0015g0101	5	388	0.0129	12	c.-19 others(23): Show c.-1912_-1911insAAAATAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	G G	GAAAATAA others(8): Show GAAAATAAAGAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp2 NA19063.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0003	1	388	0.0026	15	c.-19 others(26): Show c.-1912_-1911insAAAATAAAGAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	G G	GGAAA GGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG01109.hp1 HG01192.hp1 others(12): Show HG00741.hp1 HG01109.hp1 HG01192.hp1 HG02055.hp1 HG02109.hp1 HG02145.hp1 HG02615.hp2 HG02630.hp2 HG02970.hp1 HG03041.hp2 HG03195.hp2 HG03225.hp1 HG03540.hp2 HG06807.hp1 NA18978.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0007	a0001c0001 a0002c0002 a0003c0004 others(1): Show a0001c0001 a0002c0002 a0003c0004 a0007c0014	a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 a0002c0002t0002 a0002c0002t0003 a0003c0004t0002 a0007c0014t0002	a0001c0001t0002g0004 a0001c0001t0002g0056 a0001c0001t0003g0046 others(9): Show a0001c0001t0002g0004 a0001c0001t0002g0056 a0001c0001t0003g0046 a0001c0001t0006g0033 a0001c0001t0006g0062 a0001c0001t0009g0063 a0002c0002t0002g0010 a0002c0002t0002g0021 a0002c0002t0002g0034 a0002c0002t0003g0006 a0003c0004t0002g0007 a0007c0014t0002g0007	15	388	0.0387	4	c.-19 others(15): Show c.-1912_-1911insGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	G G	GGAAAGAA others(1): Show GGAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp2 HG01346.hp1 HG03098.hp1 others(3): Show HG01123.hp2 HG01346.hp1 HG03098.hp1 HG03471.hp2 NA18940.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0002 a0002c0002t0003 a0001c0001t0002 a0002c0002t0002 a0002c0002t0003	a0001c0001t0002g0004 a0002c0002t0002g0010 a0002c0002t0002g0082 others(2): Show a0001c0001t0002g0004 a0002c0002t0002g0010 a0002c0002t0002g0082 a0002c0002t0002g0088 a0002c0002t0003g0060	6	388	0.0155	8	c.-19 others(19): Show c.-1912_-1911insGAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	G G	GGAAAGAA others(5): Show GGAAAGAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 HG02723.hp1 HG02559.hp1 HG02723.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0004 a0002c0002 a0003c0004	a0002c0002t0002 a0003c0004t0002 a0002c0002t0002 a0003c0004t0002	a0002c0002t0002g0010 a0003c0004t0002g0007 a0002c0002t0002g0010 a0003c0004t0002g0007	2	388	0.0052	12	c.-19 others(23): Show c.-1912_-1911insGAAAGAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	GGAAA GGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp2 HG01175.hp1 HG01175.hp2 others(17): Show HG01081.hp2 HG01175.hp1 HG01175.hp2 HG01358.hp1 HG01516.hp2 HG01891.hp2 HG02280.hp1 HG02451.hp1 HG02717.hp1 HG03098.hp2 HG03139.hp2 HG03209.hp2 HG03927.hp2 HG06807.hp2 NA18906.hp2 NA18971.hp1 NA18971.hp2 NA19001.hp2 NA19056.hp2 NA19082.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0004 a0001c0001 a0002c0002 a0003c0004	a0001c0001t0002 a0001c0001t0003 a0001c0001t0018 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0018 a0001c0001t0019 a0002c0002t0002 a0003c0004t0002	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0011 others(10): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0011 a0001c0001t0002g0041 a0001c0001t0002g0048 a0001c0001t0003g0009 a0001c0001t0003g0020 a0001c0001t0003g0066 a0001c0001t0018g0050 a0001c0001t0019g0005 a0002c0002t0002g0021 a0002c0002t0002g0061 a0003c0004t0002g0007	20	388	0.0516	-4	c.-19 others(15): Show c.-1911_-1908delGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	GGAAAGAA others(1): Show GGAAAGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02615.hp1 HG02647.hp2 others(11): Show HG02257.hp1 HG02615.hp1 HG02647.hp2 HG02818.hp2 HG02976.hp1 HG03130.hp1 HG03453.hp2 HG03579.hp2 HG03704.hp2 NA18522.hp2 NA18973.hp1 NA19030.hp2 NA19060.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0003 a0001c0001 a0002c0002 a0002c0003	a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0002c0002t0002 a0002c0003t0003	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0011 others(5): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0011 a0001c0001t0003g0020 a0001c0001t0006g0033 a0002c0002t0002g0021 a0002c0003t0003g0006 a0002c0003t0003g0102	14	388	0.0361	-8	c.-19 others(19): Show c.-1911_-1904delGAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	GGAAAGAA others(5): Show GGAAAGAAAGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00609.hp2 others(27): Show HG00140.hp1 HG00280.hp1 HG00609.hp2 HG00642.hp1 HG01074.hp2 HG01099.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01243.hp2 HG01515.hp1 HG01516.hp1 HG01891.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp2 HG01993.hp1 HG02004.hp2 HG02148.hp1 HG02148.hp2 HG02486.hp1 HG02735.hp1 HG02809.hp1 HG02965.hp2 HG03139.hp1 HG03490.hp2 NA18968.hp1 NA18969.hp1 NA18979.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0002c0003 a0008c0010 a0001c0001 a0002c0003 a0008c0010	a0001c0001t0002 a0001c0001t0010 a0001c0001t0016 others(3): Show a0001c0001t0002 a0001c0001t0010 a0001c0001t0016 a0001c0001t0017 a0002c0003t0003 a0008c0010t0002	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0005 others(8): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0042 a0001c0001t0002g0053 a0001c0001t0002g0055 a0001c0001t0010g0032 a0001c0001t0016g0002 a0001c0001t0017g0002 a0002c0003t0003g0006 a0008c0010t0002g0002	30	388	0.0773	-12	c.-19 others(23): Show c.-1911_-1900delGAAAGAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	GGAAAGAA others(9): Show GGAAAGAAAGAAAGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00735.hp2 others(30): Show HG00099.hp1 HG00280.hp2 HG00735.hp2 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01168.hp1 HG01168.hp2 HG01256.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01975.hp2 HG01993.hp2 HG02132.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02523.hp1 HG02572.hp1 HG02717.hp2 HG03225.hp2 HG03688.hp1 HG04115.hp1 NA18939.hp2 NA18998.hp2 NA19058.hp1 NA19065.hp2 NA19240.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0013 a0001c0001 a0003c0013	a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0003c0013t0002	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0005 others(5): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0047 a0001c0001t0002g0058 a0001c0001t0003g0065 a0001c0001t0010g0032 a0003c0013t0002g0007	33	388	0.0851	-16	c.-19 others(27): Show c.-1911_-1896delGAAAGAAAGAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147464	GGAAAGAA others(13): Show GGAAAGAAAGAAAGAAAGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01978.hp1 HG03471.hp1 HG03516.hp2 others(10): Show HG01978.hp1 HG03471.hp1 HG03516.hp2 NA18942.hp1 NA18956.hp1 NA18964.hp2 NA18967.hp2 NA18990.hp1 NA18993.hp1 NA18995.hp1 NA19002.hp1 NA19070.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0014 others(2): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0014 a0001c0001t0002g0054 a0001c0001t0002g0079	13	388	0.0335	-20	c.-19 others(31): Show c.-1911_-1892delGAAAGAAAGAAAGAAAGAAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147465	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG01346.hp2 others(42): Show HG00423.hp1 HG00423.hp2 HG01346.hp2 HG01884.hp1 HG02015.hp1 HG02015.hp2 HG02055.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02155.hp2 HG02486.hp2 HG02622.hp2 HG02683.hp2 HG02698.hp1 HG02738.hp1 HG02738.hp2 HG02886.hp2 HG03041.hp1 HG03486.hp2 HG03669.hp2 HG03688.hp2 HG03710.hp2 HG04199.hp2 NA18940.hp2 NA18941.hp1 NA18943.hp1 NA18944.hp2 NA18948.hp2 NA18960.hp2 NA18964.hp1 NA18965.hp1 NA18972.hp1 NA18984.hp2 NA18985.hp1 NA18991.hp1 NA19000.hp1 NA19012.hp1 NA19058.hp2 NA19066.hp2 NA19067.hp1 NA19068.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0011	a0001c0001t0002g0017 a0001c0001t0002g0039 a0001c0001t0002g0087 others(14): Show a0001c0001t0002g0017 a0001c0001t0002g0039 a0001c0001t0002g0087 a0001c0001t0002g0090 a0001c0001t0002g0096 a0001c0001t0003g0003 a0001c0001t0003g0016 a0001c0001t0003g0028 a0001c0001t0003g0030 a0001c0001t0003g0040 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0100 a0001c0001t0004g0008 a0001c0001t0004g0043 a0001c0001t0005g0026 a0001c0001t0011g0037	45	388	0.1160	0	c.-19 others(5): Show c.-1911G>A	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1587	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147468	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02622.hp2 HG02886.hp2 others(2): Show HG01884.hp1 HG02622.hp2 HG02886.hp2 HG03041.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0002g0017 a0001c0001t0002g0090	5	388	0.0129	0	c.-19 others(5): Show c.-1908A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1584	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147469	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02622.hp2 HG02886.hp2 others(2): Show HG01884.hp1 HG02622.hp2 HG02886.hp2 HG03041.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0002g0017 a0001c0001t0002g0090	5	388	0.0129	0	c.-19 others(5): Show c.-1907G>A	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1583	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147469	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG01346.hp2 others(37): Show HG00423.hp1 HG00423.hp2 HG01346.hp2 HG02015.hp1 HG02015.hp2 HG02055.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02155.hp2 HG02486.hp2 HG02683.hp2 HG02698.hp1 HG02738.hp1 HG02738.hp2 HG03669.hp2 HG03688.hp2 HG03710.hp2 HG04199.hp2 NA18940.hp2 NA18941.hp1 NA18943.hp1 NA18944.hp2 NA18948.hp2 NA18960.hp2 NA18964.hp1 NA18965.hp1 NA18972.hp1 NA18984.hp2 NA18985.hp1 NA18991.hp1 NA19000.hp1 NA19012.hp1 NA19058.hp2 NA19066.hp2 NA19067.hp1 NA19068.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0011	a0001c0001t0002g0039 a0001c0001t0002g0087 a0001c0001t0002g0096 others(12): Show a0001c0001t0002g0039 a0001c0001t0002g0087 a0001c0001t0002g0096 a0001c0001t0003g0003 a0001c0001t0003g0016 a0001c0001t0003g0028 a0001c0001t0003g0030 a0001c0001t0003g0040 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0100 a0001c0001t0004g0008 a0001c0001t0004g0043 a0001c0001t0005g0026 a0001c0001t0011g0037	40	388	0.1031	0	c.-19 others(5): Show c.-1907G>T	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1583	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147470	AAAG AAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp2 HG02809.hp2 HG02895.hp1 others(3): Show HG02572.hp2 HG02809.hp2 HG02895.hp1 HG02897.hp1 HG03195.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095 a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095	6	388	0.0155	-3	c.-19 others(14): Show c.-1905_-1903delAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1581	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147473	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02622.hp2 HG02886.hp2 others(2): Show HG01884.hp1 HG02622.hp2 HG02886.hp2 HG03041.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0002g0017 a0001c0001t0002g0090	5	388	0.0129	0	c.-19 others(5): Show c.-1903G>T	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1579	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147477	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp2 HG02809.hp2 HG02895.hp1 others(3): Show HG02572.hp2 HG02809.hp2 HG02895.hp1 HG02897.hp1 HG03195.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095 a0001c0001t0003g0003 a0001c0001t0003g0029 a0001c0001t0003g0095	6	388	0.0155	0	c.-18 others(5): Show c.-1899G>T	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1575	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147498	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp1 HG03540.hp1 HG02647.hp1 HG03540.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0031 a0001c0005t0001g0031	2	388	0.0052	0	c.-18 others(5): Show c.-1878A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1554	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147502	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02071.hp2 HG02647.hp1 HG03540.hp1 HG02071.hp2 HG02647.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0001 a0001c0001t0001 a0001c0005t0001	a0001c0001t0001g0049 a0001c0005t0001g0031 a0001c0001t0001g0049 a0001c0005t0001g0031	3	388	0.0077	0	c.-18 others(5): Show c.-1874A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1550	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147505	GAAAGAAA others(6): Show GAAAGAAAGAAAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp1 HG03540.hp1 HG02647.hp1 HG03540.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0031 a0001c0005t0001g0031	2	388	0.0052	-13	c.-18 others(24): Show c.-1870_-1858delAAAGAAAGAAAGA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1546	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147506	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 HG02071.hp2 NA18983.hp1 HG01109.hp2 HG02071.hp2 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0078 a0001c0001t0001g0019 a0001c0001t0001g0049 a0001c0001t0001g0078	3	388	0.0077	0	c.-18 others(5): Show c.-1870A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1546	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147510	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 NA18983.hp1 NA18988.hp1 others(1): Show HG01109.hp2 NA18983.hp1 NA18988.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0019 a0001c0001t0001g0078 a0001c0001t0001g0001 a0001c0001t0001g0019 a0001c0001t0001g0078	4	388	0.0103	0	c.-18 others(5): Show c.-1866A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1542	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147514	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG00597.hp2 HG00621.hp1 others(35): Show HG00597.hp1 HG00597.hp2 HG00621.hp1 HG00738.hp2 HG01167.hp2 HG02027.hp1 HG02080.hp2 HG02129.hp2 HG02257.hp2 HG02293.hp1 HG02622.hp1 HG02723.hp2 HG02818.hp1 HG02922.hp2 HG03209.hp1 HG03453.hp1 HG03486.hp1 HG03834.hp1 HG03834.hp2 HG04184.hp1 HG04199.hp1 NA18906.hp1 NA18939.hp1 NA18942.hp2 NA18944.hp1 NA18947.hp1 NA18966.hp2 NA18970.hp2 NA18975.hp1 NA18984.hp1 NA18988.hp1 NA18993.hp2 NA18994.hp1 NA19001.hp1 NA19007.hp1 NA19060.hp1 NA19063.hp1 NA19240.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0011 a0005c0006 a0001c0001 a0001c0011 a0005c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0011t0001 a0005c0006t0001	a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0024 others(12): Show a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0003g0086 a0001c0001t0005g0071 a0001c0001t0007g0092 a0001c0001t0007g0094 a0001c0001t0008g0038 a0001c0001t0008g0093 a0001c0011t0001g0085 a0005c0006t0001g0075 a0005c0006t0001g0076	38	388	0.0979	0	c.-18 others(5): Show c.-1862A>G	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1538	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147515	AAG AAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02155.hp2 HG02572.hp2 others(18): Show HG01884.hp1 HG02155.hp2 HG02572.hp2 HG02622.hp2 HG02698.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03041.hp1 HG03195.hp1 HG03486.hp2 NA18940.hp2 NA18941.hp1 NA18964.hp1 NA18965.hp1 NA18991.hp1 NA19043.hp1 NA19066.hp2 NA19067.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 others(7): Show a0001c0001t0002g0017 a0001c0001t0002g0090 a0001c0001t0003g0003 a0001c0001t0003g0016 a0001c0001t0003g0028 a0001c0001t0003g0029 a0001c0001t0003g0040 a0001c0001t0003g0095 a0001c0001t0003g0098 a0001c0001t0004g0008	21	388	0.0541	-2	c.-18 others(13): Show c.-1860_-1859delAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1536	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147517	G G	GGAA GGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG00597.hp2 HG00621.hp1 others(25): Show HG00597.hp1 HG00597.hp2 HG00621.hp1 HG00738.hp2 HG01167.hp2 HG02027.hp1 HG02080.hp2 HG02129.hp2 HG02293.hp1 HG02622.hp1 HG02922.hp2 HG03453.hp1 HG03834.hp2 HG04184.hp1 HG04199.hp1 NA18939.hp1 NA18942.hp2 NA18944.hp1 NA18947.hp1 NA18966.hp2 NA18970.hp2 NA18975.hp1 NA18984.hp1 NA18993.hp2 NA18994.hp1 NA19001.hp1 NA19007.hp1 NA19063.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0006 a0001c0001 a0005c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0005c0006t0001	a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0024 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0024 a0001c0001t0001g0083 a0001c0001t0003g0086 a0001c0001t0005g0071 a0005c0006t0001g0075 a0005c0006t0001g0076	28	388	0.0722	3	c.-18 others(14): Show c.-1859_-1858insGAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1534	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147517	G G	GGAAGGAA GGAAGGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG00438.hp1 HG00438.hp2 others(50): Show HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00621.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG01069.hp2 HG01070.hp1 HG01081.hp1 HG01192.hp2 HG01515.hp2 HG01884.hp2 HG01952.hp2 HG02145.hp2 HG02155.hp1 HG02165.hp1 HG02698.hp2 HG02735.hp2 HG02896.hp1 HG02897.hp2 HG03239.hp1 HG03239.hp2 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03654.hp2 HG03831.hp1 HG03834.hp1 NA18747.hp1 NA18747.hp2 NA18943.hp2 NA18949.hp1 NA18953.hp2 NA18960.hp1 NA18966.hp1 NA18973.hp2 NA18975.hp2 NA18979.hp2 NA18980.hp2 NA18983.hp2 NA19000.hp2 NA19003.hp1 NA19003.hp2 NA19056.hp1 NA19062.hp2 NA19066.hp1 NA19068.hp1 NA19077.hp1 NA19077.hp2 NA19085.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0012 others(1): Show a0001c0001 a0001c0009 a0001c0012 a0001c0015	a0001c0001t0001 a0001c0001t0003 a0001c0009t0001 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0009t0001 a0001c0012t0001 a0001c0015t0001	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0013 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0067 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0003g0026 a0001c0009t0001g0001 a0001c0012t0001g0019 a0001c0015t0001g0074	53	388	0.1366	7	c.-18 others(18): Show c.-1859_-1858insGAAGGAA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1534	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147517	GA GA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp2 HG02723.hp2 HG02818.hp1 others(6): Show HG02257.hp2 HG02723.hp2 HG02818.hp1 HG03209.hp1 HG03486.hp1 NA18906.hp1 NA18988.hp1 NA19060.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0001 a0001c0001t0007 a0001c0001t0008 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0008 a0001c0011t0001	a0001c0001t0001g0001 a0001c0001t0001g0089 a0001c0001t0007g0092 others(4): Show a0001c0001t0001g0001 a0001c0001t0001g0089 a0001c0001t0007g0092 a0001c0001t0007g0094 a0001c0001t0008g0038 a0001c0001t0008g0093 a0001c0011t0001g0085	9	388	0.0232	-1	c.-18 others(6): Show c.-1858delA	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1534	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGAAAG others(12): Show AAAGAAAGAAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18612.hp1 NA18970.hp1 NA18978.hp1 others(1): Show NA18612.hp1 NA18970.hp1 NA18978.hp1 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0080 a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0080	4	388	0.0103	19	c.-18 others(30): Show c.-1858_-1857insAAGAAAGAAAGGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGAAAG others(11): Show AAAGAAAGAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	388	0.0026	18	c.-18 others(29): Show c.-1858_-1857insAAGAAAGAAGGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGAAAG others(8): Show AAAGAAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02004.hp1 HG02135.hp2 HG02630.hp1 others(6): Show HG02004.hp1 HG02135.hp2 HG02630.hp1 HG02896.hp2 HG04115.hp2 NA18947.hp2 NA18995.hp2 NA19012.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0001 a0001c0016t0007 a0001c0001t0001 a0001c0016t0007	a0001c0001t0001g0001 a0001c0001t0001g0025 a0001c0001t0001g0035 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0068 a0001c0016t0007g0084	9	388	0.0232	15	c.-18 others(26): Show c.-1858_-1857insAAGAAAGGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGAAAG others(12): Show AAAGAAAGGAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG01074.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0005 a0001c0005t0005	a0001c0005t0005g0027 a0001c0005t0005g0027	1	388	0.0026	19	c.-18 others(30): Show c.-1858_-1857insAAGAAAGGAAGGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGAAG AAAGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp2 HG02015.hp1 HG02015.hp2 others(15): Show HG00423.hp2 HG02015.hp1 HG02015.hp2 HG02083.hp2 HG02135.hp1 HG02683.hp2 HG02738.hp1 HG03688.hp2 HG03710.hp2 HG04199.hp2 NA18944.hp2 NA18948.hp2 NA18960.hp2 NA18972.hp1 NA18985.hp1 NA19000.hp1 NA19012.hp1 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0011	a0001c0001t0002g0039 a0001c0001t0003g0003 a0001c0001t0003g0030 others(6): Show a0001c0001t0002g0039 a0001c0001t0003g0003 a0001c0001t0003g0030 a0001c0001t0003g0097 a0001c0001t0003g0100 a0001c0001t0004g0008 a0001c0001t0004g0043 a0001c0001t0005g0026 a0001c0001t0011g0037	18	388	0.0464	6	c.-18 others(17): Show c.-1858_-1857insAAGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGAGAA others(5): Show AAAGAGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0001 a0001c0001t0012g0001	1	388	0.0026	12	c.-18 others(23): Show c.-1858_-1857insAAGAGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGGAAG others(4): Show AAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00544.hp1 others(45): Show HG00099.hp2 HG00323.hp1 HG00544.hp1 HG00544.hp2 HG00609.hp1 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG01070.hp2 HG01099.hp2 HG01257.hp1 HG01258.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02165.hp2 HG02273.hp2 HG02683.hp1 HG02970.hp2 HG03492.hp2 HG03669.hp1 HG03704.hp1 HG03831.hp2 HG03942.hp2 NA18941.hp2 NA18948.hp1 NA18957.hp1 NA18957.hp2 NA18965.hp2 NA18968.hp2 NA18972.hp2 NA18990.hp2 NA18991.hp2 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19002.hp2 NA19007.hp2 NA19062.hp1 NA19067.hp2 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19082.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0014 a0001c0001t0001 a0001c0001t0013 a0001c0001t0014	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0013 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0036 a0001c0001t0001g0044 a0001c0001t0001g0069 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0013g0001 a0001c0001t0014g0001	48	388	0.1237	11	c.-18 others(22): Show c.-1858_-1857insAAGGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAAGGAAG others(8): Show AAAGGAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp2 HG02559.hp2 HG00642.hp2 HG02559.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0005 a0001c0005t0005	a0001c0005t0005g0027 a0001c0005t0005g0027	2	388	0.0052	15	c.-18 others(26): Show c.-1858_-1857insAAGGAAGGAAGGAAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar
ABCG4_chr11_119144052_119167653	119147518	A A	AAG AAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG01256.hp2 HG01257.hp2 others(24): Show HG00423.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp2 HG01346.hp2 HG02027.hp2 HG02056.hp2 HG02074.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02523.hp2 HG03017.hp2 HG03669.hp2 HG03927.hp1 HG03942.hp1 HG04184.hp2 NA18953.hp1 NA18956.hp2 NA18967.hp1 NA18969.hp2 NA18980.hp1 NA18984.hp2 NA18997.hp1 NA19063.hp2 NA20805.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0005t0015	a0001c0001t0002g0037 a0001c0001t0002g0087 a0001c0001t0003g0003 others(7): Show a0001c0001t0002g0037 a0001c0001t0002g0087 a0001c0001t0003g0003 a0001c0001t0003g0028 a0001c0001t0003g0030 a0001c0001t0003g0040 a0001c0001t0003g0091 a0001c0001t0003g0099 a0001c0001t0004g0008 a0001c0005t0015g0101	27	388	0.0696	2	c.-18 others(13): Show c.-1858_-1857insAG	ABCG4	ENSG00000172350.10	transcript	ENST00000619701.5	protein_coding	1533	chr11	TogoVar

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