JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
AFF2_chrX_148495617_149005663	148991536	A A	AT AT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0080 a0001c0007t0080	a0001c0007t0080g0162 a0001c0007t0080g0162	1	169	0.0059	1	c.21 others(5): Show c.212dupT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	213	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148991564	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02572.hp1 HG02896.hp1 HG03139.hp1 others(2): Show HG02572.hp1 HG02896.hp1 HG03139.hp1 HG06807.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 others(1): Show a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 others(2): Show a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	5	169	0.0296	0	c.23 others(4): Show c.232A>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	232		chrX	TogoVar
AFF2_chrX_148495617_149005663	148991933	CTA CTA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0074 a0001c0001t0074	a0001c0001t0074g0033 a0001c0001t0074g0033	1	169	0.0059	-2	c.60 others(11): Show c.603_*604delAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	603	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148992086	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18943.hp1 NA18995.hp1 NA19012.hp1 NA18943.hp1 NA18995.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0065 a0001c0001t0014 a0001c0001t0065	a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0065g0056 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0065g0056	3	169	0.0178	0	c.75 others(4): Show c.754G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	754		chrX	TogoVar
AFF2_chrX_148495617_149005663	148992432	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01261.hp1 HG01978.hp1 HG01261.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0056 a0001c0001t0055 a0001c0001t0056	a0001c0001t0055g0025 a0001c0001t0056g0023 a0001c0001t0055g0025 a0001c0001t0056g0023	2	169	0.0118	0	c.11 others(5): Show c.1100C>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1100		chrX	TogoVar
AFF2_chrX_148495617_149005663	148992557	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0081 a0001c0001t0081	a0001c0001t0081g0052 a0001c0001t0081g0052	1	169	0.0059	0	c.12 others(5): Show c.1225T>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1225		chrX	TogoVar
AFF2_chrX_148495617_149005663	148992593	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02622.hp1 HG02896.hp2 NA19240.hp1 HG02622.hp1 HG02896.hp2 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0018 a0001c0003t0112 a0001c0002t0018 a0001c0003t0112	a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0003t0112g0130 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0003t0112g0130	3	169	0.0178	0	c.12 others(5): Show c.1261C>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1261		chrX	TogoVar
AFF2_chrX_148495617_149005663	148992953	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01884.hp2 HG01891.hp2 others(20): Show HG01109.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02630.hp1 HG02647.hp1 HG02809.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03540.hp2 HG03579.hp1 NA18952.hp1 NA18961.hp1 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 others(17): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 a0001c0001t0039 a0001c0001t0046 a0001c0001t0073 a0001c0001t0110 a0001c0001t0123 a0001c0002t0022 a0001c0002t0031 a0001c0002t0034 a0001c0002t0040 a0001c0002t0047 a0001c0002t0054 a0001c0002t0072 a0001c0002t0094 a0001c0002t0107 a0001c0002t0108 a0001c0002t0111 a0001c0003t0109	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(20): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0022g0134 a0001c0001t0039g0101 a0001c0001t0046g0165 a0001c0001t0073g0074 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0022g0003 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0054g0133 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0107g0131 a0001c0002t0108g0002 a0001c0002t0111g0096 a0001c0003t0109g0122	23	169	0.1361	0	c.16 others(5): Show c.1621C>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1621		chrX	TogoVar
AFF2_chrX_148495617_149005663	148993051	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02486.hp1 HG02615.hp1 HG02809.hp1 HG02486.hp1 HG02615.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0092 a0001c0001t0093 a0001c0001t0035 a0001c0001t0092 a0001c0001t0093	a0001c0001t0035g0078 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0035g0078 a0001c0001t0092g0008 a0001c0001t0093g0007	3	169	0.0178	0	c.17 others(5): Show c.1719A>C	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1719		chrX	TogoVar
AFF2_chrX_148495617_149005663	148993094	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0029 a0001c0002t0029	a0001c0002t0029g0149 a0001c0002t0029g0149	1	169	0.0059	0	c.17 others(5): Show c.1762G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1762		chrX	TogoVar
AFF2_chrX_148495617_149005663	148993209	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0031 a0001c0002t0031	a0001c0002t0031g0148 a0001c0002t0031g0148	1	169	0.0059	0	c.18 others(5): Show c.1877A>C	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	1877		chrX	TogoVar
AFF2_chrX_148495617_149005663	148993868	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01884.hp2 HG01891.hp2 others(21): Show HG01109.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02630.hp1 HG02647.hp1 HG02809.hp2 HG02895.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03540.hp2 HG03579.hp1 NA18952.hp1 NA18961.hp1 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 others(18): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 a0001c0001t0039 a0001c0001t0046 a0001c0001t0073 a0001c0001t0106 a0001c0001t0110 a0001c0001t0123 a0001c0002t0022 a0001c0002t0031 a0001c0002t0034 a0001c0002t0040 a0001c0002t0047 a0001c0002t0054 a0001c0002t0072 a0001c0002t0094 a0001c0002t0107 a0001c0002t0108 a0001c0002t0111 a0001c0003t0109	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(21): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0022g0134 a0001c0001t0039g0101 a0001c0001t0046g0165 a0001c0001t0073g0074 a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0022g0003 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0054g0133 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0107g0131 a0001c0002t0108g0002 a0001c0002t0111g0096 a0001c0003t0109g0122	24	169	0.1420	0	c.25 others(5): Show c.2536A>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	2536		chrX	TogoVar
AFF2_chrX_148495617_149005663	148994093	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0073 a0001c0001t0073	a0001c0001t0073g0074 a0001c0001t0073g0074	1	169	0.0059	0	c.27 others(5): Show c.2761A>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	2761		chrX	TogoVar
AFF2_chrX_148495617_149005663	148994101	TTAAA TTAAA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0121 a0001c0001t0106g0121	1	169	0.0059	-4	c.27 others(15): Show c.2773_*2776delATAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	2773	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148994175	TCTC TCTC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0096 a0001c0001t0096	a0001c0001t0096g0146 a0001c0001t0096g0146	1	169	0.0059	-3	c.28 others(14): Show c.2844_*2846delCTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	2844		chrX	TogoVar
AFF2_chrX_148495617_149005663	148994592	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01884.hp2 HG01891.hp2 others(34): Show HG01109.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02486.hp1 HG02572.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG06807.hp2 NA18952.hp1 NA18961.hp1 NA19043.hp1 NA19240.hp1 NA20129.hp2 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 others(29): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 a0001c0001t0035 a0001c0001t0039 a0001c0001t0046 a0001c0001t0073 a0001c0001t0092 a0001c0001t0093 a0001c0001t0106 a0001c0001t0110 a0001c0001t0123 a0001c0002t0018 a0001c0002t0022 a0001c0002t0029 a0001c0002t0031 a0001c0002t0034 a0001c0002t0040 a0001c0002t0047 a0001c0002t0054 a0001c0002t0072 a0001c0002t0094 a0001c0002t0105 a0001c0002t0107 a0001c0002t0108 a0001c0002t0111 a0001c0003t0109 a0001c0003t0112 a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(34): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0022g0134 a0001c0001t0035g0078 a0001c0001t0039g0101 a0001c0001t0046g0165 a0001c0001t0073g0074 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0022g0003 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0054g0133 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0105g0117 a0001c0002t0107g0131 a0001c0002t0108g0002 a0001c0002t0111g0096 a0001c0003t0109g0122 a0001c0003t0112g0130 a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	37	169	0.2189	0	c.32 others(5): Show c.3260A>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	3260		chrX	TogoVar
AFF2_chrX_148495617_149005663	148994782	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01884.hp2 HG01891.hp2 others(26): Show HG01109.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02895.hp1 HG02896.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03579.hp1 NA18952.hp1 NA18961.hp1 NA19043.hp1 NA19240.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 others(22): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 a0001c0001t0039 a0001c0001t0046 a0001c0001t0073 a0001c0001t0106 a0001c0001t0110 a0001c0001t0123 a0001c0002t0018 a0001c0002t0022 a0001c0002t0029 a0001c0002t0031 a0001c0002t0034 a0001c0002t0040 a0001c0002t0047 a0001c0002t0054 a0001c0002t0072 a0001c0002t0094 a0001c0002t0105 a0001c0002t0107 a0001c0002t0108 a0001c0002t0111 a0001c0003t0109 a0001c0003t0112	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(26): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0022g0134 a0001c0001t0039g0101 a0001c0001t0046g0165 a0001c0001t0073g0074 a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0022g0003 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0054g0133 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0105g0117 a0001c0002t0107g0131 a0001c0002t0108g0002 a0001c0002t0111g0096 a0001c0003t0109g0122 a0001c0003t0112g0130	29	169	0.1716	0	c.34 others(5): Show c.3450G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	3450		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995046	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02622.hp1 HG02630.hp2 HG02896.hp2 others(2): Show HG02622.hp1 HG02630.hp2 HG02896.hp2 HG03486.hp2 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0018 a0001c0002t0029 a0001c0002t0105 others(1): Show a0001c0002t0018 a0001c0002t0029 a0001c0002t0105 a0001c0003t0112	a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 others(2): Show a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 a0001c0002t0105g0117 a0001c0003t0112g0130	5	169	0.0296	0	c.37 others(5): Show c.3714T>C	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	3714		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995090	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0121 a0001c0001t0106g0121	1	169	0.0059	0	c.37 others(5): Show c.3758C>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	3758		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995304	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02622.hp1 NA19240.hp1 HG02622.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0018 a0001c0002t0018	a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0018g0151 a0001c0002t0018g0156	2	169	0.0118	0	c.39 others(5): Show c.3972C>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	3972		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995372	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0121 a0001c0001t0106g0121	1	169	0.0059	0	c.40 others(5): Show c.4040C>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4040		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995478	T T	TG TG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01884.hp2 HG01891.hp2 others(29): Show HG01109.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02486.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02896.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03579.hp1 NA18952.hp1 NA18961.hp1 NA19043.hp1 NA19240.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 others(25): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 a0001c0001t0035 a0001c0001t0039 a0001c0001t0046 a0001c0001t0073 a0001c0001t0092 a0001c0001t0093 a0001c0001t0106 a0001c0001t0110 a0001c0001t0123 a0001c0002t0018 a0001c0002t0022 a0001c0002t0029 a0001c0002t0031 a0001c0002t0034 a0001c0002t0040 a0001c0002t0047 a0001c0002t0054 a0001c0002t0072 a0001c0002t0094 a0001c0002t0105 a0001c0002t0107 a0001c0002t0108 a0001c0002t0111 a0001c0003t0109 a0001c0003t0112	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(29): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0022g0134 a0001c0001t0035g0078 a0001c0001t0039g0101 a0001c0001t0046g0165 a0001c0001t0073g0074 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0022g0003 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0054g0133 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0105g0117 a0001c0002t0107g0131 a0001c0002t0108g0002 a0001c0002t0111g0096 a0001c0003t0109g0122 a0001c0003t0112g0130	32	169	0.1894	1	c.41 others(6): Show c.4151dupG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4152	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148995484	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02572.hp1 HG02896.hp1 HG03139.hp1 others(2): Show HG02572.hp1 HG02896.hp1 HG03139.hp1 HG06807.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 others(1): Show a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 others(2): Show a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	5	169	0.0296	0	c.41 others(5): Show c.4152T>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4152		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995485	G G	GT GT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0075 a0001c0004t0075	a0001c0004t0075g0004 a0001c0004t0075g0004	1	169	0.0059	1	c.41 others(12): Show c.4153_*4154insT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4154		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995485	G G	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02896.hp1 HG03139.hp1 HG06807.hp2 others(1): Show HG02896.hp1 HG03139.hp1 HG06807.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0095 a0001c0004t0113 a0001c0005t0023 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 others(1): Show a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	4	169	0.0237	0	c.41 others(5): Show c.4153G>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4153		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995487	G G	GGGT GGGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp2 HG02258.hp1 HG03225.hp1 HG01884.hp2 HG02258.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0007 a0001c0002 a0001c0007	a0001c0002t0031 a0001c0002t0107 a0001c0007t0080 a0001c0002t0031 a0001c0002t0107 a0001c0007t0080	a0001c0002t0031g0148 a0001c0002t0107g0131 a0001c0007t0080g0162 a0001c0002t0031g0148 a0001c0002t0107g0131 a0001c0007t0080g0162	3	169	0.0178	3	c.41 others(14): Show c.4157_*4158insTGG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4158	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148995488	G G	GGT GGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02027.hp1 HG02145.hp1 HG02280.hp1 others(5): Show HG02027.hp1 HG02145.hp1 HG02280.hp1 HG02630.hp2 HG03130.hp1 HG03540.hp1 NA18952.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0073 a0001c0001t0088 a0001c0001t0123 others(5): Show a0001c0001t0073 a0001c0001t0088 a0001c0001t0123 a0001c0002t0029 a0001c0002t0054 a0001c0002t0101 a0001c0002t0108 a0001c0003t0109	a0001c0001t0073g0074 a0001c0001t0088g0104 a0001c0001t0123g0090 others(5): Show a0001c0001t0073g0074 a0001c0001t0088g0104 a0001c0001t0123g0090 a0001c0002t0029g0149 a0001c0002t0054g0133 a0001c0002t0101g0160 a0001c0002t0108g0002 a0001c0003t0109g0122	8	169	0.0473	2	c.41 others(13): Show c.4157_*4158insTG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4158	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148995489	G G	GT GT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp2 HG01891.hp1 HG01891.hp2 others(8): Show HG00639.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp1 HG02257.hp2 HG02622.hp2 HG02630.hp1 HG03486.hp2 NA18974.hp1 NA19000.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0008 a0001c0001 a0001c0002 a0003c0008	a0001c0001t0050 a0001c0001t0059 a0001c0001t0077 others(7): Show a0001c0001t0050 a0001c0001t0059 a0001c0001t0077 a0001c0001t0089 a0001c0001t0110 a0001c0002t0019 a0001c0002t0034 a0001c0002t0102 a0001c0002t0105 a0003c0008t0045	a0001c0001t0050g0026 a0001c0001t0059g0014 a0001c0001t0077g0095 others(8): Show a0001c0001t0050g0026 a0001c0001t0059g0014 a0001c0001t0077g0095 a0001c0001t0089g0110 a0001c0001t0110g0118 a0001c0002t0019g0107 a0001c0002t0019g0123 a0001c0002t0034g0077 a0001c0002t0102g0094 a0001c0002t0105g0117 a0003c0008t0045g0010	11	169	0.0651	1	c.41 others(12): Show c.4157_*4158insT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4158		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995490	C C	CG CG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00621.hp1 HG00673.hp1 HG01978.hp1 others(21): Show HG00621.hp1 HG00673.hp1 HG01978.hp1 HG02083.hp1 HG02602.hp1 HG02818.hp1 HG03017.hp1 HG03654.hp1 HG03688.hp1 HG03942.hp1 NA18943.hp1 NA18953.hp1 NA18962.hp1 NA18977.hp1 NA18994.hp1 NA19004.hp1 NA19005.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19082.hp1 NA19083.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0009 a0001c0001t0013 others(13): Show a0001c0001t0003 a0001c0001t0009 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0036 a0001c0001t0043 a0001c0001t0048 a0001c0001t0055 a0001c0001t0057 a0001c0001t0074 a0001c0001t0076 a0001c0001t0086 a0001c0001t0114 a0001c0001t0116 a0001c0002t0009	a0001c0001t0003g0042 a0001c0001t0003g0063 a0001c0001t0003g0065 others(21): Show a0001c0001t0003g0042 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0003g0086 a0001c0001t0009g0142 a0001c0001t0009g0143 a0001c0001t0013g0034 a0001c0001t0013g0072 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0015g0032 a0001c0001t0015g0060 a0001c0001t0036g0139 a0001c0001t0043g0006 a0001c0001t0048g0013 a0001c0001t0055g0025 a0001c0001t0057g0135 a0001c0001t0074g0033 a0001c0001t0076g0153 a0001c0001t0086g0031 a0001c0001t0114g0079 a0001c0001t0116g0075 a0001c0002t0009g0126	24	169	0.1420	1	c.41 others(6): Show c.4165dupG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4166	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148995490	C C	CGG CGG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00140.hp1 HG01106.hp1 HG00140.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0083 a0001c0001t0084 a0001c0001t0083 a0001c0001t0084	a0001c0001t0083g0024 a0001c0001t0084g0030 a0001c0001t0083g0024 a0001c0001t0084g0030	2	169	0.0118	2	c.41 others(13): Show c.4164_*4165dupGG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4166	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148995490	C C	CGGG CGGG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0082 a0001c0002t0082	a0001c0002t0082g0016 a0001c0002t0082g0016	1	169	0.0059	3	c.41 others(14): Show c.4163_*4165dupGGG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4166	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148995490	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp2 HG01884.hp2 HG01891.hp1 others(24): Show HG00639.hp2 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG02027.hp1 HG02055.hp1 HG02145.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02572.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02896.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03486.hp2 HG03540.hp1 HG06807.hp2 NA18952.hp1 NA18961.hp1 NA18974.hp1 NA19000.hp1 NA20300.hp1 NA21309.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0003c0008	a0001c0001t0050 a0001c0001t0059 a0001c0001t0073 others(22): Show a0001c0001t0050 a0001c0001t0059 a0001c0001t0073 a0001c0001t0077 a0001c0001t0088 a0001c0001t0089 a0001c0001t0110 a0001c0001t0123 a0001c0002t0019 a0001c0002t0029 a0001c0002t0031 a0001c0002t0034 a0001c0002t0054 a0001c0002t0101 a0001c0002t0102 a0001c0002t0105 a0001c0002t0107 a0001c0002t0108 a0001c0003t0109 a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023 a0001c0007t0080 a0003c0008t0045	a0001c0001t0050g0026 a0001c0001t0059g0014 a0001c0001t0073g0074 others(24): Show a0001c0001t0050g0026 a0001c0001t0059g0014 a0001c0001t0073g0074 a0001c0001t0077g0095 a0001c0001t0088g0104 a0001c0001t0089g0110 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0019g0107 a0001c0002t0019g0123 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0054g0133 a0001c0002t0101g0160 a0001c0002t0102g0094 a0001c0002t0105g0117 a0001c0002t0107g0131 a0001c0002t0108g0002 a0001c0003t0109g0122 a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129 a0001c0007t0080g0162 a0003c0008t0045g0010	27	169	0.1598	0	c.41 others(5): Show c.4158C>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4158		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995490	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00609.hp1 HG00738.hp1 HG01074.hp1 others(54): Show HG00609.hp1 HG00738.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01258.hp1 HG01358.hp1 HG01433.hp1 HG01884.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp2 HG02257.hp1 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02615.hp1 HG02622.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02896.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03540.hp2 HG03579.hp1 HG06807.hp1 NA18612.hp1 NA18747.hp1 NA18944.hp1 NA18959.hp1 NA18967.hp1 NA18983.hp1 NA18990.hp1 NA19043.hp1 NA19079.hp1 NA19088.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0002c0009	a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 others(46): Show a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0017 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0025 a0001c0001t0035 a0001c0001t0038 a0001c0001t0039 a0001c0001t0042 a0001c0001t0046 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0060 a0001c0001t0061 a0001c0001t0062 a0001c0001t0063 a0001c0001t0064 a0001c0001t0069 a0001c0001t0070 a0001c0001t0071 a0001c0001t0090 a0001c0001t0092 a0001c0001t0093 a0001c0001t0104 a0001c0001t0106 a0001c0001t0117 a0001c0001t0121 a0001c0001t0122 a0001c0002t0018 a0001c0002t0020 a0001c0002t0022 a0001c0002t0032 a0001c0002t0040 a0001c0002t0047 a0001c0002t0072 a0001c0002t0078 a0001c0002t0091 a0001c0002t0094 a0001c0002t0111 a0001c0003t0026 a0001c0003t0028 a0001c0003t0030 a0001c0003t0079 a0001c0003t0112 a0002c0009t0103	a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 others(54): Show a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0017g0040 a0001c0001t0017g0145 a0001c0001t0020g0109 a0001c0001t0021g0103 a0001c0001t0021g0150 a0001c0001t0022g0134 a0001c0001t0025g0081 a0001c0001t0035g0078 a0001c0001t0038g0102 a0001c0001t0039g0101 a0001c0001t0042g0012 a0001c0001t0046g0165 a0001c0001t0051g0069 a0001c0001t0052g0064 a0001c0001t0053g0027 a0001c0001t0060g0067 a0001c0001t0061g0098 a0001c0001t0062g0087 a0001c0001t0063g0053 a0001c0001t0064g0084 a0001c0001t0069g0047 a0001c0001t0070g0044 a0001c0001t0071g0028 a0001c0001t0090g0099 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0104g0049 a0001c0001t0106g0121 a0001c0001t0117g0164 a0001c0001t0121g0046 a0001c0001t0122g0092 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0020g0132 a0001c0002t0022g0003 a0001c0002t0032g0114 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0072g0018 a0001c0002t0078g0152 a0001c0002t0091g0136 a0001c0002t0094g0106 a0001c0002t0111g0096 a0001c0003t0026g0157 a0001c0003t0028g0005 a0001c0003t0030g0158 a0001c0003t0079g0161 a0001c0003t0112g0130 a0002c0009t0103g0050	57	169	0.3373	0	c.41 others(5): Show c.4158C>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4158		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995491	G G	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02572.hp1 HG02896.hp1 HG03139.hp1 others(2): Show HG02572.hp1 HG02896.hp1 HG03139.hp1 HG06807.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 others(1): Show a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 others(2): Show a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	5	169	0.0296	0	c.41 others(5): Show c.4159G>T	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4159		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995497	G G	GGT GGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18989.hp1 NA19086.hp1 NA18989.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0085 a0001c0001t0041 a0001c0001t0085	a0001c0001t0041g0071 a0001c0001t0085g0167 a0001c0001t0041g0071 a0001c0001t0085g0167	2	169	0.0118	2	c.41 others(13): Show c.4165_*4166insGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4166		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995498	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18989.hp1 NA19086.hp1 NA18989.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0085 a0001c0001t0041 a0001c0001t0085	a0001c0001t0041g0071 a0001c0001t0085g0167 a0001c0001t0041g0071 a0001c0001t0085g0167	2	169	0.0118	0	c.41 others(5): Show c.4166T>G	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4166		chrX	TogoVar
AFF2_chrX_148495617_149005663	148995782	AG AG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0069 a0001c0001t0051g0069	1	169	0.0059	-1	c.44 others(6): Show c.4452delG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4452	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148996077	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00609.hp1 HG00609.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0064 a0001c0001t0052g0064	1	169	0.0059	0	c.47 others(5): Show c.4745G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4745		chrX	TogoVar
AFF2_chrX_148495617_149005663	148996331	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02486.hp1 HG02572.hp1 HG02615.hp1 others(10): Show HG02486.hp1 HG02572.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp2 HG02809.hp1 HG02896.hp1 HG02896.hp2 HG03139.hp1 HG03486.hp2 HG06807.hp2 NA19240.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0035 a0001c0001t0092 a0001c0001t0093 others(8): Show a0001c0001t0035 a0001c0001t0092 a0001c0001t0093 a0001c0002t0018 a0001c0002t0029 a0001c0002t0105 a0001c0003t0112 a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0001t0035g0078 a0001c0001t0092g0008 a0001c0001t0093g0007 others(10): Show a0001c0001t0035g0078 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 a0001c0002t0105g0117 a0001c0003t0112g0130 a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	13	169	0.0769	0	c.49 others(5): Show c.4999G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	4999		chrX	TogoVar
AFF2_chrX_148495617_149005663	148996520	G G	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0121 a0001c0001t0106g0121	1	169	0.0059	0	c.51 others(5): Show c.5188G>C	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5188		chrX	TogoVar
AFF2_chrX_148495617_149005663	148997284	T T	TAC TAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01891.hp2 HG02895.hp1 HG01891.hp2 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0110 a0001c0001t0106 a0001c0001t0110	a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0106g0121 a0001c0001t0110g0118	2	169	0.0118	2	c.59 others(13): Show c.5967_*5968dupAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997284	T T	TACAC TACAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01934.hp1 HG02257.hp1 others(11): Show HG01109.hp1 HG01934.hp1 HG02257.hp1 HG02486.hp1 HG02615.hp1 HG02630.hp1 HG02647.hp1 HG02809.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03540.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0001t0011 a0001c0001t0039 others(8): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0039 a0001c0001t0092 a0001c0001t0093 a0001c0002t0034 a0001c0002t0040 a0001c0002t0072 a0001c0002t0094 a0001c0002t0108 a0001c0002t0111	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(11): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0039g0101 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0108g0002 a0001c0002t0111g0096	14	169	0.0828	4	c.59 others(15): Show c.5965_*5968dupACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997284	T T	TACACAC TACACAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03486.hp1 NA19043.hp1 NA20129.hp2 others(1): Show HG03486.hp1 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0022 a0001c0001t0046 a0001c0002t0022 others(1): Show a0001c0001t0022 a0001c0001t0046 a0001c0002t0022 a0001c0002t0047	a0001c0001t0022g0134 a0001c0001t0046g0165 a0001c0002t0022g0003 others(1): Show a0001c0001t0022g0134 a0001c0001t0046g0165 a0001c0002t0022g0003 a0001c0002t0047g0108	4	169	0.0237	6	c.59 others(17): Show c.5963_*5968dupACACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997284	T T	TACACACA others(1): Show TACACACAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18952.hp1 NA18961.hp1 NA18952.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0073 a0001c0001t0123 a0001c0001t0073 a0001c0001t0123	a0001c0001t0073g0074 a0001c0001t0123g0090 a0001c0001t0073g0074 a0001c0001t0123g0090	2	169	0.0118	8	c.59 others(19): Show c.5961_*5968dupACACACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997284	TACAC TACAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0084 a0001c0001t0084	a0001c0001t0084g0030 a0001c0001t0084g0030	1	169	0.0059	-4	c.59 others(15): Show c.5965_*5968delACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5965	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997297	ACACT ACACT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp2 HG02145.hp1 HG02280.hp1 others(6): Show HG01884.hp2 HG02145.hp1 HG02280.hp1 HG02622.hp1 HG02630.hp2 HG02896.hp1 HG02896.hp2 HG03225.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 a0001c0002 a0001c0003 a0001c0004	a0001c0002t0018 a0001c0002t0029 a0001c0002t0031 others(5): Show a0001c0002t0018 a0001c0002t0029 a0001c0002t0031 a0001c0002t0054 a0001c0002t0107 a0001c0003t0109 a0001c0003t0112 a0001c0004t0095	a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 others(6): Show a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0054g0133 a0001c0002t0107g0131 a0001c0003t0109g0122 a0001c0003t0112g0130 a0001c0004t0095g0113	9	169	0.0533	-4	c.59 others(15): Show c.5969_*5972delTCAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997299	ACT ACT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02572.hp1 HG03139.hp1 HG06807.hp2 others(1): Show HG02572.hp1 HG03139.hp1 HG06807.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0075 a0001c0004t0113 a0001c0005t0023 a0001c0004t0075 a0001c0004t0113 a0001c0005t0023	a0001c0004t0075g0004 a0001c0004t0113g0159 a0001c0005t0023g0125 others(1): Show a0001c0004t0075g0004 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	4	169	0.0237	-2	c.59 others(13): Show c.5969_*5970delTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997301	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01891.hp2 HG01934.hp1 others(20): Show HG01109.hp1 HG01891.hp2 HG01934.hp1 HG02257.hp1 HG02486.hp1 HG02615.hp1 HG02630.hp1 HG02647.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03209.hp1 HG03486.hp1 HG03540.hp2 HG03579.hp1 NA18952.hp1 NA18961.hp1 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 others(17): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0022 a0001c0001t0035 a0001c0001t0039 a0001c0001t0046 a0001c0001t0073 a0001c0001t0092 a0001c0001t0093 a0001c0001t0106 a0001c0001t0110 a0001c0001t0123 a0001c0002t0022 a0001c0002t0034 a0001c0002t0040 a0001c0002t0047 a0001c0002t0072 a0001c0002t0094 a0001c0002t0108 a0001c0002t0111	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(20): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0022g0134 a0001c0001t0035g0078 a0001c0001t0039g0101 a0001c0001t0046g0165 a0001c0001t0073g0074 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0106g0121 a0001c0001t0110g0118 a0001c0001t0123g0090 a0001c0002t0022g0003 a0001c0002t0034g0077 a0001c0002t0040g0111 a0001c0002t0047g0108 a0001c0002t0072g0018 a0001c0002t0094g0106 a0001c0002t0108g0002 a0001c0002t0111g0096	23	169	0.1361	0	c.59 others(5): Show c.5969T>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	5969		chrX	TogoVar
AFF2_chrX_148495617_149005663	148997375	G G	GA GA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp2 HG02145.hp1 HG02280.hp1 others(10): Show HG01884.hp2 HG02145.hp1 HG02280.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp2 HG02896.hp1 HG02896.hp2 HG03139.hp1 HG03225.hp1 HG06807.hp2 NA19240.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 others(1): Show a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0002t0018 a0001c0002t0029 a0001c0002t0031 others(8): Show a0001c0002t0018 a0001c0002t0029 a0001c0002t0031 a0001c0002t0054 a0001c0002t0107 a0001c0003t0109 a0001c0003t0112 a0001c0004t0075 a0001c0004t0095 a0001c0004t0113 a0001c0005t0023	a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 others(10): Show a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0054g0133 a0001c0002t0107g0131 a0001c0003t0109g0122 a0001c0003t0112g0130 a0001c0004t0075g0004 a0001c0004t0095g0113 a0001c0004t0113g0159 a0001c0005t0023g0125 a0001c0005t0023g0129	13	169	0.0769	1	c.60 others(6): Show c.6047dupA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	6048	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148997507	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01934.hp1 HG02257.hp1 others(5): Show HG01109.hp1 HG01934.hp1 HG02257.hp1 HG02647.hp1 HG03540.hp2 HG03579.hp1 NA18952.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0011 a0001c0001t0039 others(2): Show a0001c0001t0010 a0001c0001t0011 a0001c0001t0039 a0001c0001t0073 a0001c0001t0123	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(5): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0039g0101 a0001c0001t0073g0074 a0001c0001t0123g0090	8	169	0.0473	0	c.61 others(5): Show c.6175G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	21/21	6175		chrX	TogoVar

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