Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	distance	chr	external
ABRAXAS2_chr10_124796819_124841667	124801454	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0085 a0001c0002t0001g0085	1	350	0.0029	0	c.-37 others(4): Show c.-376G>T	ABRAXAS2	ENSG00000165660.8	transcript	ENST00000298492.6	protein_coding	365	chr10	TogoVar
ABRAXAS2_chr10_124796819_124841667	124801484	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0151 a0001c0002t0001g0151	1	350	0.0029	0	c.-34 others(4): Show c.-346C>T	ABRAXAS2	ENSG00000165660.8	transcript	ENST00000298492.6	protein_coding	335	chr10	TogoVar
ABRAXAS2_chr10_124796819_124841667	124801525	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02109.hp1 others(17): Show HG01884.hp1 HG02055.hp2 HG02109.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02559.hp1 HG02647.hp1 HG02717.hp2 HG02818.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG03453.hp1 HG03579.hp2 NA18522.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0011 others(10): Show a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0017 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057	20	350	0.0571	0	c.-30 others(4): Show c.-305C>T	ABRAXAS2	ENSG00000165660.8	transcript	ENST00000298492.6	protein_coding	294	chr10	TogoVar
ABRAXAS2_chr10_124796819_124841667	124801563	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02109.hp1 others(17): Show HG01884.hp1 HG02055.hp2 HG02109.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02559.hp1 HG02647.hp1 HG02717.hp2 HG02818.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG03453.hp1 HG03579.hp2 NA18522.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0011 others(10): Show a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0017 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057	20	350	0.0571	0	c.-26 others(4): Show c.-267G>T	ABRAXAS2	ENSG00000165660.8	transcript	ENST00000298492.6	protein_coding	256	chr10	TogoVar
ABRAXAS2_chr10_124796819_124841667	124801725	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	350	0.0029	0	c.-10 others(4): Show c.-105C>T	ABRAXAS2	ENSG00000165660.8	transcript	ENST00000298492.6	protein_coding	94	chr10	TogoVar
ABRAXAS2_chr10_124796819_124841667	124801763	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0204	1	350	0.0029	0	c.-67 others(3): Show c.-67G>A	ABRAXAS2	ENSG00000165660.8	transcript	ENST00000298492.6	protein_coding	56	chr10	TogoVar
ABRA_chr8_106754483_106775244	106770264	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19067.hp2 NA19067.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	440	0.0023	0	c.-74 others(3): Show c.-74C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	20	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770350	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0046	1	440	0.0023	0	c.-16 others(4): Show c.-160C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	106	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770521	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	440	0.0023	0	c.-33 others(4): Show c.-331T>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	277	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770590	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	440	0.0023	0	c.-40 others(4): Show c.-400T>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	346	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770624	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0062 a0001c0003t0001g0062	1	440	0.0023	0	c.-43 others(4): Show c.-434A>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	380	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770895	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0004 a0001c0002t0003g0004	1	440	0.0023	0	c.-70 others(4): Show c.-705G>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	651	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770948	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG03209.hp1 NA19043.hp1 others(1): Show HG02055.hp1 HG03209.hp1 NA19043.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0054 a0001c0001t0001g0021 a0001c0001t0001g0054	4	440	0.0091	0	c.-75 others(4): Show c.-758G>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	704	chr8	TogoVar
ABRA_chr8_106754483_106775244	106770961	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	440	0.0023	0	c.-77 others(4): Show c.-771G>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	717	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771030	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00323.hp1 others(108): Show HG00140.hp2 HG00280.hp2 HG00323.hp1 HG00438.hp2 HG00544.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00741.hp1 HG00741.hp2 HG01074.hp2 HG01081.hp2 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01168.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01257.hp1 HG01346.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG02004.hp2 HG02071.hp2 HG02083.hp1 HG02132.hp2 HG02155.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp2 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02965.hp1 HG02970.hp1 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp2 HG03516.hp2 HG03540.hp2 HG03654.hp2 HG03688.hp2 HG03704.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp2 NA18948.hp1 NA18952.hp2 NA18960.hp1 NA18963.hp1 NA18966.hp2 NA18967.hp2 NA18974.hp2 NA18975.hp1 NA18983.hp1 NA18986.hp2 NA18987.hp2 NA18989.hp2 NA18990.hp1 NA18993.hp2 NA18994.hp1 NA19002.hp1 NA19003.hp1 NA19007.hp1 NA19012.hp1 NA19030.hp2 NA19043.hp2 NA19054.hp1 NA19059.hp2 NA19060.hp2 NA19072.hp1 NA19076.hp2 NA19082.hp2 NA19083.hp2 NA19087.hp2 NA19089.hp1 NA20300.hp2 NA20905.hp1 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0005c0011 a0001c0001 a0001c0002 a0005c0011	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0005c0011t0002	a0001c0001t0001g0001 a0001c0002t0001g0012 a0001c0002t0001g0066 others(17): Show a0001c0001t0001g0001 a0001c0002t0001g0012 a0001c0002t0001g0066 a0001c0002t0001g0070 a0001c0002t0001g0075 a0001c0002t0002g0003 a0001c0002t0002g0019 a0001c0002t0002g0069 a0001c0002t0002g0071 a0001c0002t0002g0074 a0001c0002t0002g0076 a0001c0002t0002g0079 a0001c0002t0003g0004 a0001c0002t0003g0077 a0001c0002t0003g0080 a0001c0002t0004g0008 a0001c0002t0004g0068 a0001c0002t0004g0072 a0001c0002t0004g0078 a0005c0011t0002g0073	111	440	0.2523	0	c.-84 others(4): Show c.-840G>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	786	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771120	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18992.hp1 NA18992.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	1	440	0.0023	0	c.-93 others(4): Show c.-930A>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	876	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771137	TACTAAAA others(4100): Show TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTC CCAGCTACTCGGGAGGCTGAGGCAGAAGAATCCTGTGAACCCGGGAGGCG GAGCTTGCAGTGAGCGGAGATCGAGCCACTGCACTCCAGCCTGGGTGACG AGCGAGACTCCGTCTCAAAAAAAAGAAAGAAAGAAAGAAAGAAATTATTG TTGGAATACATATTTTGAAATACTTTGTTTGAAAAGATCATCTAAGGACA GAATTCTAAGGACAGAATAAATGAAAGCTATCGGTAGCTCACTTCTTATC CCCATCCCGCCTACCCTTACCGTTTGGTTTGTGGTTGTTGTTTTGTTTTG TTTTTTGAGATAAGGTCTTGCTGTGTCCCCAGGCTGGAGTGCAGTGGTGT GATGATGGCTCACTGCAGCCTTGACCTCCTGTGCTCAATCAGTCCTCCTG CCTCAGTCTCCCAAGCAGCTGGGAATACAAGCATGAGCCACCATGCCTAG CTAATTGTTTTTGTTTTTGTTTTATATAGACGGAGTCTCGCTATGTTGCC CAGGCTGGTCTCAAACTCCTGAGCTTGTGCAGTCTTCCCACCTTGGCCTC CCAAAGTGCTGGGATGACAGATGTGAGCCCCCACGTCTGGCCCCTTTTGT TTTTAGTAACACAATCTTCCTTAGCAGGACTTTATGTTCATGTAGGCAAA GACAGTTTTTCAACTCTCACAAGAGGGACTGAAATATAATATTTTTTTAA AAGGACTGGAAAGACAAGCATGTGGACAGAAAGAGAAACATCTATGCAGT GTATTAAACCAGATAAAAATGTCCAGGGCTCAGCAATGAATAATTTCTTA AAGTAAGACGGAATTTTTTTTCATTCAACAGGTCTGTTGGCTTTAAAACT ATATCCTTTCCTTCAGTCTTGCATGCAAGTAACCATACTGATTGAAAACT GCTGTTTAAGAGCACAAAAAGGTATAAAAGTTAATTATTTCAGAGAGTGA GACATTTATTTTGGAAAAAAGTTGGTATTAGTTTTTTGTTGTTGTTGTTG TTTTGTTTTTTTGTTTGAGACGGAGTCTCGCTCTGTCGCCGAGGCTGGAG TGCAGTGGCGCGATCTCGGCTCACCGCAAGCTCCGCCTCCCAGGTTCACA CCATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGACTACAGGAGCCCGCC ACCACGCCCGGCTAATTTTTTTGTATTTTTAGCAGAGACAGGGTTTCACC GTGTTAGCCAGGATGGTCTTGATCTCCTGGCCTCGTGATCCTCCTTCCTC GGCCTTCCAAAGTGCTGGGATTACAGGCGCGAGCCACCGCGCCCGGCCGC TATTCGTTTTTCATCGTGTGGGTTATTTACCTCTTAGGATAAAAAAAATT GGGAAGTGATTTAATACTTAATCTACAGATCTGTCAGAGGTGTTTCCAGA GTTCAACGGCATCTGATAACATTAACTGAGGGCCAGAAATGCGGAGAAAA AAAAAAATCCCTCTTGATTAATTAAGAGGAAATTGGATCACAAGGAAAGA AAACTATTACAAACAAAGATTTCAATCTGAGCCTGAAATTTCTGGCATTC CTCCCAGCAATGCAGATTCACTGCAGCCTGTTTGGTTCTTATCAGAATCT CTTCATCCCACTTGGAAGGTCTTAGGAAAAAATAGAGTTCCTCTAAGACA CCCATACGCTTAGCCCAGAATCAGGATAATTTATAGCTTTCAACGGGATT TTCCTGCTTGCCTGTCCACACCTGCCCCAGATTCAGTCCTGATAGAGGGA GAAGAAAGGGAAACAGCAAATGTTAACAGTCTTTCACGTATTAACTGGCA TTGCAGTCAGCTACTGGGGTTTGGGGATGTCAGCAGATGGTCTTGGCTGA AAAACAGGAGCAGCTTCTAAAAGAACCTAGTCATTCCTTCTGAGATTTAG CCTCCATGGCAACTGCAGTCCTTCATTCATCACTCTACAGAAGAGAGTGT AAAATCGTTTTCCTCCTCACGCGTGCTTTGGGCCTTTCTTCCCTAAAGCA AGGTCTGTATGCTACCTCCCATACATCTTTGATTACTATAGAAATATTAC GTTCATTGTCTCAATCGAAATTCAAATTCTTGGGAGTTCTAGATTTTCCT GTTTCATTTATGTTAGAAATGAAAATAAAACCTCAAAGACAAAAATAAAA TGAATTAAGTGTTTTACAATGGGAGCTTCCTAGGAAACCTTGAGATTTGA AACTGTTTGTGAAGATGCAGACCTGATTAATGAGATCATTATCGCCTAAG AAGTCTGTCATAAGTGAGAAAGTATCTTGAAAATAGTATTTGTTATTTTT TGATCATATGAATAGTAGAAAGAGGAAGGAGAGGTATTTATATATTTTTC TGCATGATACACTTAGAAGTTAGGTAGAGCCAACCCTCATAGCCAGCTGT ATAATCTGATTAAAGAGACTTTAGGAACCTACATTTGCTCAAAGCTATAT GAAACAATCGCTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTC TTTTGCCCAGGCTGAAGTGAAGTGCCATGGTCTTGGCTCACTGCAACCTC CGCCCCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG GATTACAGGCATGCTCCACCACACCTGGCAAATTTTGTATTTTTAGTAGT GACGGGGTTTTGCCATATTGGCCAGGCTGGTCTCAAACTCCTGATCTCAG GTGATCCAGCTGCCTGGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGC CACCACACCAGGCCACAATAGCTGCTTTTTTAAGTTGTTTTATTGTGTAT ATTTGAAGTTTACAACATGATTTTATGGAATACATGTATAATAAATAGCA AAATGATTACTATAAGAAAGCAAGGTAACATATTTATCATCTCACATAGT TGCTTTTTTGATAAGAGCAGCTAAAATCTACTTTAAAATTTCTAATGCAC TTTTATTAACTATAGTGCTCTGTTGTACATTAAATCTCTAGATTTGTTAA TCCTACATATCTGCTACATTGTATCCGTTGACCTGTTTTCCCATTTCATC CCCCAAGCCAACTCTTGTAACCACTATTTTATACTCTATATATTTGACCT TTTTTAAAAAATCATGCAATATTTTCCTTTCTGTGTCTGGCTTATTTTGC TTAACAAAATGTCCTTCTTGTCCATCCATGTTGTGCCAAATAGCAGGATG CCATTCTTTTTTCTGGCTGAATAATATTCCATTCTTTCTTTATATATAGA CACACACATATACATATACACACACATATATATACACACATACATCTATA TAATATGTATATTATATGTTATATATATGCATACACACATATATACATAT TCCACATTTTCTTTATCCATTTGTCCATCTACAGACATGTACGTTGTATC CATATTTTGGGTATTGTGAAAAATACCACTATAAATATGGGATTGCAGAT ATCTTTATGAGGTAGTGATTTCATTCCCTTTGGGTATAGGCTCAAAAGAG GGATTGTGGGATCATATATAGTTCTATTTTTAATTTCTTTAGGAACCTCC ATACTGTTTTCCATAATGACTGCAACACCCTACATTTTCACCAACAATGT ACTTTTCTCCACATCATTGCCAACATCTATTATCTCTTGACTTTTCAATA ATAGTCATCCTAATGGATATGAAGTGATATCTCATAGTGGTTTTGGTTTG CATCTCCTGGATGATTATTGATGTTGAGCACATTTTCATATACCTACTGT CCATTTTTATATTTTCTTTGGATAAATATTTCTTTAGGTCCTTTGTCTAT TTTTTAATGAAGTTATTTGTCTTTCTGCTATTAACTTGTGTTTTATTTAT ACTTTTAAAATACTTAACTCTTTATCAGATATGTAATTTACAGATTTTTT TACAGATATTTTTCCCAATTCATAGGTTGCCCTTTTGTTTTGTTGTTTCC TTTGCTGTGCAGCTTTTTAGTTTGATATAGTTCCATTTATTTATGTTTGA TTTTGTAGCCTGAGCTTTTAGTATAATATATTTAAAAAATCATTGCCAAG GCCAGTCA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0003 a0001c0002t0002g0003	1	440	0.0023	-4107	c.-50 others(10): Show c.-5054_-948del	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	894	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771173	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	440	0.0023	0	c.-98 others(4): Show c.-983C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	929	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771183	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18951.hp1 NA18953.hp1 NA18997.hp1 others(1): Show NA18951.hp1 NA18953.hp1 NA18997.hp1 NA19062.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0002 a0001c0003t0001g0002	4	440	0.0091	0	c.-99 others(4): Show c.-993T>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	939	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771196	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	440	0.0023	0	c.-10 others(5): Show c.-1006G>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	952	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771197	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0003 a0001c0002t0002g0003	1	440	0.0023	0	c.-10 others(5): Show c.-1007C>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	953	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771212	A A	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0006 a0001c0004t0001g0006	1	440	0.0023	0	c.-10 others(5): Show c.-1022T>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	968	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771229	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18950.hp1 NA18970.hp1 NA18977.hp1 others(6): Show NA18950.hp1 NA18970.hp1 NA18977.hp1 NA18982.hp1 NA18992.hp2 NA19006.hp1 NA19010.hp1 NA19058.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	9	440	0.0205	0	c.-10 others(5): Show c.-1039C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	985	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771254	A A	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0003 a0001c0002t0002g0003	1	440	0.0023	0	c.-10 others(5): Show c.-1064T>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1010	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771282	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0002 a0001c0003t0001g0002	1	440	0.0023	0	c.-10 others(5): Show c.-1092A>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1038	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771286	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01167.hp2 HG03540.hp1 HG01167.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	440	0.0046	0	c.-10 others(5): Show c.-1096C>A	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1042	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771376	ATCTAAGG others(7): Show ATCTAAGGACAGAAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0004 a0001c0002t0003g0004	1	440	0.0023	-14	c.-12 others(25): Show c.-1200_-1187delATTCTGTCCTTAGA	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1133	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771424	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0004 a0001c0002t0003g0004	1	440	0.0023	0	c.-12 others(5): Show c.-1234G>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1180	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771473	GTTGTTTT others(10): Show GTTGTTTTGTTTTGTTTT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	-17	c.-13 others(28): Show c.-1300_-1284delAAAACAAAACAAAACAA	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1230	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771493	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1303C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1249	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771495	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1305C>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1251	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771497	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1307A>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1253	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771504	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1314A>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1260	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771505	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1315A>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1261	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771506	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1316C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1262	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771508	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1318A>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1264	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771509	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1319C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1265	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771510	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1320A>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1266	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771511	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1321C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1267	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771512	T T	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1322A>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1268	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771515	C C	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1325G>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1271	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771518	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1328C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1274	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771519	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1329C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1275	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771521	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1331A>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1277	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771522	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1332C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1278	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771523	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1333C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1279	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771525	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1335C>G	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1281	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771526	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1336A>C	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1282	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771528	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1338G>A	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1284	chr8	TogoVar
ABRA_chr8_106754483_106775244	106771530	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	440	0.0023	0	c.-13 others(5): Show c.-1340C>T	ABRA	ENSG00000174429.4	transcript	ENST00000311955.4	protein_coding	1286	chr8	TogoVar

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