JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
AGPAT5_chr8_6703642_6766503	6759080	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02109.hp2 HG03486.hp2 HG03516.hp2 HG02109.hp2 HG03486.hp2 HG03516.hp2	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0013 a0001c0005t0013 a0001c0003t0013 a0001c0005t0013	a0001c0003t0013g0064 a0001c0005t0013g0072 a0001c0005t0013g0073 a0001c0003t0013g0064 a0001c0005t0013g0072 a0001c0005t0013g0073	3	404	0.0074	0	c.16 others(5): Show c.1692T>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1692		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759116	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0016 a0001c0001t0034g0016	1	404	0.0025	0	c.17 others(5): Show c.1728T>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1728		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759135	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01934.hp1 HG02080.hp2 HG02132.hp2 others(27): Show HG01934.hp1 HG02080.hp2 HG02132.hp2 HG02572.hp2 HG02647.hp1 HG02723.hp2 HG02886.hp1 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03486.hp1 HG03540.hp2 NA18945.hp1 NA18947.hp1 NA18951.hp2 NA18972.hp1 NA18982.hp2 NA18983.hp2 NA18993.hp1 NA19000.hp2 NA19057.hp2 NA19058.hp1 NA19064.hp1 NA19068.hp2 NA19077.hp1 NA19081.hp2 NA19083.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 a0001c0005t0005	a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 others(21): Show a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 a0001c0001t0004g0070 a0001c0001t0004g0079 a0001c0001t0004g0307 a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0004g0312 a0001c0001t0004g0314 a0001c0001t0004g0315 a0001c0001t0004g0316 a0001c0001t0004g0317 a0001c0001t0004g0319 a0001c0001t0005g0028 a0001c0001t0005g0124 a0001c0001t0005g0126 a0001c0001t0005g0127 a0001c0001t0005g0128 a0001c0001t0005g0129 a0001c0001t0055g0313 a0001c0005t0005g0130	30	404	0.0743	0	c.17 others(5): Show c.1747A>T	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1747		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759171	G G	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0061 a0001c0001t0048g0061	1	404	0.0025	0	c.17 others(5): Show c.1783G>T	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1783		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759197	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0313 a0001c0001t0055g0313	1	404	0.0025	0	c.18 others(5): Show c.1809C>T	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1809		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759266	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp1 HG02145.hp1 HG02486.hp2 others(6): Show HG02055.hp1 HG02145.hp1 HG02486.hp2 HG02559.hp2 HG03139.hp2 HG03195.hp1 NA18906.hp1 NA19043.hp1 NA19240.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0006 a0001c0003t0012 a0001c0003t0006 a0001c0003t0012	a0001c0003t0006g0009 a0001c0003t0006g0305 a0001c0003t0006g0306 others(1): Show a0001c0003t0006g0009 a0001c0003t0006g0305 a0001c0003t0006g0306 a0001c0003t0012g0018	9	404	0.0223	0	c.18 others(5): Show c.1878G>A	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1878		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759319	C C	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19081.hp1 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0297 a0001c0001t0035g0297	1	404	0.0025	0	c.19 others(5): Show c.1931C>A	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1931		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759332	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp1 HG02145.hp1 HG02486.hp2 others(7): Show HG02055.hp1 HG02145.hp1 HG02486.hp2 HG02559.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 NA18906.hp1 NA19043.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0039 a0001c0003t0006 a0001c0003t0012 a0001c0001t0039 a0001c0003t0006 a0001c0003t0012	a0001c0001t0039g0044 a0001c0003t0006g0009 a0001c0003t0006g0305 others(2): Show a0001c0001t0039g0044 a0001c0003t0006g0009 a0001c0003t0006g0305 a0001c0003t0006g0306 a0001c0003t0012g0018	10	404	0.0248	0	c.19 others(5): Show c.1944G>A	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	1944		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759395	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0146 a0001c0001t0040g0146	1	404	0.0025	0	c.20 others(5): Show c.2007T>A	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2007		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759508	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01934.hp1 HG02080.hp2 HG02132.hp2 others(27): Show HG01934.hp1 HG02080.hp2 HG02132.hp2 HG02572.hp2 HG02647.hp1 HG02723.hp2 HG02886.hp1 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03486.hp1 HG03540.hp2 NA18945.hp1 NA18947.hp1 NA18951.hp2 NA18972.hp1 NA18982.hp2 NA18983.hp2 NA18993.hp1 NA19000.hp2 NA19057.hp2 NA19058.hp1 NA19064.hp1 NA19068.hp2 NA19077.hp1 NA19081.hp2 NA19083.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 a0001c0005t0005	a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 others(21): Show a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 a0001c0001t0004g0070 a0001c0001t0004g0079 a0001c0001t0004g0307 a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0004g0312 a0001c0001t0004g0314 a0001c0001t0004g0315 a0001c0001t0004g0316 a0001c0001t0004g0317 a0001c0001t0004g0319 a0001c0001t0005g0028 a0001c0001t0005g0124 a0001c0001t0005g0126 a0001c0001t0005g0127 a0001c0001t0005g0128 a0001c0001t0005g0129 a0001c0001t0055g0313 a0001c0005t0005g0130	30	404	0.0743	0	c.21 others(5): Show c.2120T>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2120		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759749	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0313 a0001c0001t0055g0313	1	404	0.0025	0	c.23 others(5): Show c.2361C>T	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2361		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759768	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0016 a0001c0001t0034g0016	1	404	0.0025	0	c.23 others(5): Show c.2380C>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2380		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759844	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02109.hp1 HG02486.hp1 HG02572.hp1 others(9): Show HG02109.hp1 HG02486.hp1 HG02572.hp1 HG02809.hp1 HG02886.hp2 HG02895.hp2 HG03453.hp1 HG03516.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0010 a0001c0001t0016 a0001c0001t0024 others(4): Show a0001c0001t0010 a0001c0001t0016 a0001c0001t0024 a0001c0001t0029 a0001c0001t0033 a0001c0001t0050 a0001c0003t0041	a0001c0001t0010g0005 a0001c0001t0016g0069 a0001c0001t0016g0074 others(6): Show a0001c0001t0010g0005 a0001c0001t0016g0069 a0001c0001t0016g0074 a0001c0001t0016g0076 a0001c0001t0024g0062 a0001c0001t0029g0109 a0001c0001t0033g0125 a0001c0001t0050g0075 a0001c0003t0041g0107	12	404	0.0297	0	c.24 others(5): Show c.2456T>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2456		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6759956	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0222 a0001c0001t0042g0222	1	404	0.0025	0	c.25 others(5): Show c.2568T>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2568		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760076	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0001 a0001c0001t0043g0001	1	404	0.0025	0	c.26 others(5): Show c.2688G>A	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2688		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760232	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0021 a0001c0001t0026g0021	1	404	0.0025	0	c.28 others(5): Show c.2844A>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2844		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760233	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0062 a0001c0001t0024g0062	1	404	0.0025	0	c.28 others(5): Show c.2845A>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2845		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760256	G G	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00323.hp2 HG01358.hp1 HG00323.hp2 HG01358.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0252 a0001c0001t0019g0274 a0001c0001t0019g0252 a0001c0001t0019g0274	2	404	0.0050	0	c.28 others(5): Show c.2868G>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2868		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760271	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp2 HG02622.hp2 HG02922.hp1 others(3): Show HG02258.hp2 HG02622.hp2 HG02922.hp1 HG02970.hp2 HG03130.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 others(1): Show a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 a0001c0001t0007g0232	6	404	0.0149	0	c.28 others(5): Show c.2883G>A	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	2883		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760451	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0047 a0001c0001t0047	a0001c0001t0047g0189 a0001c0001t0047g0189	1	404	0.0025	0	c.30 others(5): Show c.3063C>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3063		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760461	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0096 a0001c0001t0030g0096	1	404	0.0025	0	c.30 others(5): Show c.3073C>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3073		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760474	C C	CA CA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp2 HG02622.hp2 HG02922.hp1 others(3): Show HG02258.hp2 HG02622.hp2 HG02922.hp1 HG02970.hp2 HG03130.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 others(1): Show a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 a0001c0001t0007g0232	6	404	0.0149	1	c.30 others(6): Show c.3092dupA	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3093	INFO_REALIGN_3_PRIME	chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760557	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp2 HG02622.hp2 HG02922.hp1 others(3): Show HG02258.hp2 HG02622.hp2 HG02922.hp1 HG02970.hp2 HG03130.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 others(1): Show a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 a0001c0001t0007g0232	6	404	0.0149	0	c.31 others(5): Show c.3169A>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3169		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760584	G G	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01070.hp2 HG01099.hp1 HG01109.hp2 others(3): Show HG01070.hp2 HG01099.hp1 HG01109.hp2 HG01496.hp1 HG03225.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0014 a0001c0001t0017 a0001c0001t0023 others(1): Show a0001c0001t0014 a0001c0001t0017 a0001c0001t0023 a0001c0003t0014	a0001c0001t0014g0205 a0001c0001t0017g0020 a0001c0001t0017g0047 others(2): Show a0001c0001t0014g0205 a0001c0001t0017g0020 a0001c0001t0017g0047 a0001c0001t0023g0020 a0001c0003t0014g0027	6	404	0.0149	0	c.31 others(5): Show c.3196G>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3196		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760626	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02809.hp2 HG03453.hp2 NA19030.hp1 others(1): Show HG02809.hp2 HG03453.hp2 NA19030.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0050 a0001c0001t0015 a0001c0001t0050	a0001c0001t0015g0065 a0001c0001t0015g0067 a0001c0001t0015g0068 others(1): Show a0001c0001t0015g0065 a0001c0001t0015g0067 a0001c0001t0015g0068 a0001c0001t0050g0075	4	404	0.0099	0	c.32 others(5): Show c.3238A>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3238		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760649	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01934.hp1 HG02080.hp2 HG02132.hp2 others(27): Show HG01934.hp1 HG02080.hp2 HG02132.hp2 HG02572.hp2 HG02647.hp1 HG02723.hp2 HG02886.hp1 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03486.hp1 HG03540.hp2 NA18945.hp1 NA18947.hp1 NA18951.hp2 NA18972.hp1 NA18982.hp2 NA18983.hp2 NA18993.hp1 NA19000.hp2 NA19057.hp2 NA19058.hp1 NA19064.hp1 NA19068.hp2 NA19077.hp1 NA19081.hp2 NA19083.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 a0001c0005t0005	a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 others(21): Show a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 a0001c0001t0004g0070 a0001c0001t0004g0079 a0001c0001t0004g0307 a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0004g0312 a0001c0001t0004g0314 a0001c0001t0004g0315 a0001c0001t0004g0316 a0001c0001t0004g0317 a0001c0001t0004g0319 a0001c0001t0005g0028 a0001c0001t0005g0124 a0001c0001t0005g0126 a0001c0001t0005g0127 a0001c0001t0005g0128 a0001c0001t0005g0129 a0001c0001t0055g0313 a0001c0005t0005g0130	30	404	0.0743	0	c.32 others(5): Show c.3261A>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3261		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760735	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0046	a0001c0001t0046g0100 a0001c0001t0046g0100	1	404	0.0025	0	c.33 others(5): Show c.3347A>G	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3347		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760797	CTA CTA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp1 HG02145.hp1 HG02486.hp2 others(6): Show HG02055.hp1 HG02145.hp1 HG02486.hp2 HG02559.hp2 HG03139.hp2 HG03195.hp1 NA18906.hp1 NA19043.hp1 NA19240.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0006 a0001c0003t0012 a0001c0003t0006 a0001c0003t0012	a0001c0003t0006g0009 a0001c0003t0006g0305 a0001c0003t0006g0306 others(1): Show a0001c0003t0006g0009 a0001c0003t0006g0305 a0001c0003t0006g0306 a0001c0003t0012g0018	9	404	0.0223	-2	c.34 others(13): Show c.3411_*3412delAT	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3411	INFO_REALIGN_3_PRIME	chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6760983	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0227 a0001c0001t0045g0227	1	404	0.0025	0	c.35 others(5): Show c.3595A>C	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3595		chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6761335	C C	CT CT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp2 HG02622.hp2 HG02896.hp2 others(6): Show HG02258.hp2 HG02622.hp2 HG02896.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp2 HG03471.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0011 a0001c0001t0007 a0001c0001t0011	a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 others(4): Show a0001c0001t0007g0031 a0001c0001t0007g0034 a0001c0001t0007g0231 a0001c0001t0007g0232 a0001c0001t0011g0048 a0001c0001t0011g0049 a0001c0001t0011g0050	9	404	0.0223	1	c.39 others(6): Show c.3954dupT	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3955	INFO_REALIGN_3_PRIME	chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6761342	T T	TA TA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01934.hp1 HG02080.hp2 HG02132.hp2 others(27): Show HG01934.hp1 HG02080.hp2 HG02132.hp2 HG02572.hp2 HG02647.hp1 HG02723.hp2 HG02886.hp1 HG02965.hp1 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03486.hp1 HG03540.hp2 NA18945.hp1 NA18947.hp1 NA18951.hp2 NA18972.hp1 NA18982.hp2 NA18983.hp2 NA18993.hp1 NA19000.hp2 NA19057.hp2 NA19058.hp1 NA19064.hp1 NA19068.hp2 NA19077.hp1 NA19081.hp2 NA19083.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0055 a0001c0005t0005	a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 others(21): Show a0001c0001t0004g0010 a0001c0001t0004g0019 a0001c0001t0004g0066 a0001c0001t0004g0070 a0001c0001t0004g0079 a0001c0001t0004g0307 a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0004g0312 a0001c0001t0004g0314 a0001c0001t0004g0315 a0001c0001t0004g0316 a0001c0001t0004g0317 a0001c0001t0004g0319 a0001c0001t0005g0028 a0001c0001t0005g0124 a0001c0001t0005g0126 a0001c0001t0005g0127 a0001c0001t0005g0128 a0001c0001t0005g0129 a0001c0001t0055g0313 a0001c0005t0005g0130	30	404	0.0743	1	c.39 others(6): Show c.3960dupA	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	3961	INFO_REALIGN_3_PRIME	chr8	TogoVar
AGPAT5_chr8_6703642_6766503	6761451	G G	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03669.hp2 HG03669.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0044 a0001c0002t0044	a0001c0002t0044g0220 a0001c0002t0044g0220	1	404	0.0025	0	c.40 others(5): Show c.4063G>T	AGPAT5	ENSG00000155189.12	transcript	ENST00000285518.11	protein_coding	8/8	4063		chr8	TogoVar
AGPS_chr2_177387773_177548834	177538313	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0228 a0001c0001t0051g0228	1	258	0.0039	0	c.11 others(4): Show c.118A>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	118		chr2	TogoVar
AGPS_chr2_177387773_177548834	177538361	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0236 a0001c0001t0026g0236	1	258	0.0039	0	c.16 others(4): Show c.166G>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	166		chr2	TogoVar
AGPS_chr2_177387773_177548834	177538572	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp2 HG02818.hp1 HG03453.hp2 others(2): Show HG02055.hp2 HG02818.hp1 HG03453.hp2 HG06807.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0049 a0001c0001t0050 a0001c0001t0016 a0001c0001t0049 a0001c0001t0050	a0001c0001t0016g0212 a0001c0001t0016g0213 a0001c0001t0016g0214 others(2): Show a0001c0001t0016g0212 a0001c0001t0016g0213 a0001c0001t0016g0214 a0001c0001t0049g0001 a0001c0001t0050g0001	5	258	0.0194	0	c.37 others(4): Show c.377C>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	377		chr2	TogoVar
AGPS_chr2_177387773_177548834	177538612	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02809.hp2 HG02922.hp2 HG02809.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0028 a0001c0001t0027 a0001c0001t0028	a0001c0001t0027g0226 a0001c0001t0028g0227 a0001c0001t0027g0226 a0001c0001t0028g0227	2	258	0.0078	0	c.41 others(4): Show c.417G>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	417		chr2	TogoVar
AGPS_chr2_177387773_177548834	177538709	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02922.hp1 HG03195.hp1 HG02922.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0207 a0001c0001t0017g0208 a0001c0001t0017g0207 a0001c0001t0017g0208	2	258	0.0078	0	c.51 others(4): Show c.514T>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	514		chr2	TogoVar
AGPS_chr2_177387773_177548834	177538747	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp2 HG02818.hp1 HG03453.hp2 others(2): Show HG02055.hp2 HG02818.hp1 HG03453.hp2 HG06807.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0049 a0001c0001t0050 a0001c0001t0016 a0001c0001t0049 a0001c0001t0050	a0001c0001t0016g0212 a0001c0001t0016g0213 a0001c0001t0016g0214 others(2): Show a0001c0001t0016g0212 a0001c0001t0016g0213 a0001c0001t0016g0214 a0001c0001t0049g0001 a0001c0001t0050g0001	5	258	0.0194	0	c.55 others(4): Show c.552T>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	552		chr2	TogoVar
AGPS_chr2_177387773_177548834	177538916	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0226 a0001c0001t0027g0226	1	258	0.0039	0	c.72 others(4): Show c.721T>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	721		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539060	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00558.hp2 HG00609.hp2 HG00673.hp1 others(3): Show HG00558.hp2 HG00609.hp2 HG00673.hp1 NA18946.hp1 NA19004.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0034 a0001c0001t0007g0063 a0001c0001t0007g0064 others(3): Show a0001c0001t0007g0034 a0001c0001t0007g0063 a0001c0001t0007g0064 a0001c0001t0007g0065 a0001c0001t0007g0077 a0001c0001t0007g0083	6	258	0.0233	0	c.86 others(4): Show c.865A>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	865		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539300	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0166 a0001c0001t0029g0166	1	258	0.0039	0	c.11 others(5): Show c.1105T>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1105		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539301	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp1 HG02602.hp1 HG02698.hp2 others(10): Show HG02055.hp1 HG02602.hp1 HG02698.hp2 HG02965.hp1 HG03130.hp2 HG03139.hp2 HG03225.hp2 HG03471.hp1 HG03704.hp1 HG04184.hp1 NA20129.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0004 a0001c0002t0048 a0001c0001t0004 a0001c0002t0004 a0001c0002t0048	a0001c0001t0004g0093 a0001c0002t0004g0002 a0001c0002t0004g0003 others(10): Show a0001c0001t0004g0093 a0001c0002t0004g0002 a0001c0002t0004g0003 a0001c0002t0004g0004 a0001c0002t0004g0005 a0001c0002t0004g0006 a0001c0002t0004g0007 a0001c0002t0004g0009 a0001c0002t0004g0010 a0001c0002t0004g0011 a0001c0002t0004g0012 a0001c0002t0004g0013 a0001c0002t0048g0008	13	258	0.0504	0	c.11 others(5): Show c.1106A>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1106		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539348	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0047 a0001c0001t0047	a0001c0001t0047g0150 a0001c0001t0047g0150	1	258	0.0039	0	c.11 others(5): Show c.1153C>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1153		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539503	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0046	a0001c0001t0046g0209 a0001c0001t0046g0209	1	258	0.0039	0	c.13 others(5): Show c.1308C>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1308		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539559	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02886.hp2 HG02922.hp1 HG03195.hp1 HG02886.hp2 HG02922.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0046 a0001c0001t0017 a0001c0001t0046	a0001c0001t0017g0207 a0001c0001t0017g0208 a0001c0001t0046g0209 a0001c0001t0017g0207 a0001c0001t0017g0208 a0001c0001t0046g0209	3	258	0.0116	0	c.13 others(5): Show c.1364A>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1364		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539668	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0038 a0001c0001t0045g0038	1	258	0.0039	0	c.14 others(5): Show c.1473A>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1473		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539756	G G	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0001 a0001c0001t0050g0001	1	258	0.0039	0	c.15 others(5): Show c.1561G>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1561		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539896	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0244 a0001c0001t0030g0244	1	258	0.0039	0	c.17 others(5): Show c.1701T>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1701		chr2	TogoVar
AGPS_chr2_177387773_177548834	177539907	TTGA TTGA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01243.hp1 HG02559.hp1 others(4): Show HG01109.hp1 HG01243.hp1 HG02559.hp1 HG02895.hp1 HG02970.hp1 HG03471.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0018 a0001c0001t0008 a0001c0001t0018	a0001c0001t0008g0216 a0001c0001t0008g0217 a0001c0001t0008g0218 others(4): Show a0001c0001t0008g0216 a0001c0001t0008g0217 a0001c0001t0008g0218 a0001c0001t0008g0219 a0001c0001t0008g0220 a0001c0001t0018g0215 a0001c0001t0018g0221	7	258	0.0271	-3	c.17 others(14): Show c.1716_*1718delTGA	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1716	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGPS_chr2_177387773_177548834	177539914	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0031 a0001c0004t0031	a0001c0004t0031g0222 a0001c0004t0031g0222	1	258	0.0039	0	c.17 others(5): Show c.1719G>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	1719		chr2	TogoVar

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