JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	external
AGPS_chr2_177387773_177548834	177543303	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5108G>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5108	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543304	G G	GGAATTAA others(3): Show GGAATTAAAAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	10	c.51 others(21): Show c.5109_*5110insGAATTAAAAT	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5110	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543305	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5110T>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5110	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543306	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5111G>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5111	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543307	C C	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5112C>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5112	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543316	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5121T>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5121	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543317	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5122A>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5122	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543318	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5123A>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5123	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543319	C C	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5124C>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5124	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543319	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02615.hp2 HG02630.hp1 HG02809.hp1 HG02615.hp2 HG02630.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0020 a0001c0001t0014g0021 a0001c0001t0014g0022 a0001c0001t0014g0020 a0001c0001t0014g0021 a0001c0001t0014g0022	3	258	0.0116	0	c.51 others(5): Show c.5124C>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5124	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543324	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5129A>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5129	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543326	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5131T>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5131	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543327	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5132T>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5132	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543328	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5133C>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5133	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543330	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5135G>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5135	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543333	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5138C>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5138	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543338	C C	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5143C>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5143	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543342	G G	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5147G>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5147	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543344	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5149T>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5149	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543346	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5151A>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5151	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543348	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5153A>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5153	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543352	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5157T>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5157	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543362	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5167A>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5167	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543363	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5168T>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5168	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543367	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5172T>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5172	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543368	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5173A>T	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5173	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543369	G G	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5174G>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5174	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543370	G G	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5175G>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5175	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543372	T T	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5177T>G	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5177	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543376	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5181T>C	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5181	chr2	TogoVar
AGPS_chr2_177387773_177548834	177543382	C C	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0099 a0001c0001t0041g0099	1	258	0.0039	0	c.51 others(5): Show c.5187C>A	AGPS	ENSG00000018510.18	transcript	ENST00000264167.11	protein_coding	20/20	5187	chr2	TogoVar
AGR2_chr7_16786811_16809999	16791833	C C	CA CA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00408.hp1 HG00544.hp2 HG00639.hp1 others(37): Show HG00408.hp1 HG00544.hp2 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02647.hp2 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03453.hp2 HG03471.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 NA18906.hp1 NA18945.hp2 NA18954.hp2 NA18955.hp1 NA18971.hp2 NA18985.hp2 NA19000.hp1 NA19001.hp2 NA19003.hp2 NA19010.hp2 NA19043.hp2 NA19065.hp2 NA19087.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010	a0001c0001t0004g0027 a0001c0001t0004g0042 a0001c0001t0004g0061 others(27): Show a0001c0001t0004g0027 a0001c0001t0004g0042 a0001c0001t0004g0061 a0001c0001t0004g0070 a0001c0001t0004g0084 a0001c0001t0004g0126 a0001c0001t0004g0129 a0001c0001t0004g0150 a0001c0001t0004g0191 a0001c0001t0004g0210 a0001c0001t0004g0224 a0001c0001t0004g0226 a0001c0001t0004g0232 a0001c0001t0004g0240 a0001c0001t0005g0046 a0001c0001t0005g0062 a0001c0001t0005g0080 a0001c0001t0005g0081 a0001c0001t0005g0083 a0001c0001t0005g0114 a0001c0001t0005g0116 a0001c0001t0005g0118 a0001c0001t0005g0154 a0001c0001t0005g0208 a0001c0001t0005g0218 a0001c0001t0005g0220 a0001c0001t0005g0221 a0001c0001t0005g0223 a0001c0001t0009g0029 a0001c0001t0010g0064	40	460	0.0870	1	c.10 others(6): Show c.1074dupT	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	1074	chr7	TogoVar
AGR2_chr7_16786811_16809999	16791907	A A	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp1 HG02572.hp1 HG03209.hp2 HG00639.hp1 HG02572.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0029 a0001c0001t0009g0029	3	460	0.0065	0	c.10 others(5): Show c.1001T>G	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	1001	chr7	TogoVar
AGR2_chr7_16786811_16809999	16791913	G G	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00280.hp1 HG00408.hp1 HG00544.hp2 others(69): Show HG00280.hp1 HG00408.hp1 HG00544.hp2 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp2 HG01109.hp1 HG01243.hp2 HG02004.hp2 HG02165.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02897.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp2 HG03688.hp2 HG03834.hp1 NA18522.hp2 NA18906.hp1 NA18945.hp2 NA18954.hp2 NA18955.hp2 NA18959.hp1 NA18971.hp2 NA18975.hp1 NA18985.hp2 NA19000.hp1 NA19001.hp2 NA19003.hp2 NA19004.hp1 NA19010.hp2 NA19030.hp1 NA19043.hp2 NA19065.hp2 NA19078.hp1 NA19087.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 others(3): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0014 a0001c0001t0018	a0001c0001t0003g0024 a0001c0001t0003g0030 a0001c0001t0003g0053 others(53): Show a0001c0001t0003g0024 a0001c0001t0003g0030 a0001c0001t0003g0053 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0088 a0001c0001t0003g0092 a0001c0001t0003g0093 a0001c0001t0003g0112 a0001c0001t0003g0119 a0001c0001t0003g0120 a0001c0001t0003g0127 a0001c0001t0003g0133 a0001c0001t0003g0136 a0001c0001t0003g0139 a0001c0001t0003g0153 a0001c0001t0003g0169 a0001c0001t0003g0184 a0001c0001t0003g0197 a0001c0001t0003g0199 a0001c0001t0003g0200 a0001c0001t0003g0207 a0001c0001t0003g0209 a0001c0001t0003g0225 a0001c0001t0003g0235 a0001c0001t0004g0027 a0001c0001t0004g0042 a0001c0001t0004g0061 a0001c0001t0004g0070 a0001c0001t0004g0084 a0001c0001t0004g0126 a0001c0001t0004g0129 a0001c0001t0004g0150 a0001c0001t0004g0191 a0001c0001t0004g0210 a0001c0001t0004g0224 a0001c0001t0004g0226 a0001c0001t0004g0232 a0001c0001t0004g0240 a0001c0001t0005g0046 a0001c0001t0005g0062 a0001c0001t0005g0080 a0001c0001t0005g0081 a0001c0001t0005g0083 a0001c0001t0005g0114 a0001c0001t0005g0116 a0001c0001t0005g0118 a0001c0001t0005g0154 a0001c0001t0005g0208 a0001c0001t0005g0218 a0001c0001t0005g0220 a0001c0001t0005g0221 a0001c0001t0005g0223 a0001c0001t0009g0029 a0001c0001t0014g0140 a0001c0001t0018g0089	72	460	0.1565	0	c.99 others(4): Show c.995C>A	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	995	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792079	G G	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp1 HG02572.hp1 HG03209.hp2 HG00639.hp1 HG02572.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0029 a0001c0001t0009g0029	3	460	0.0065	0	c.82 others(4): Show c.829C>T	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	829	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792091	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0094 a0001c0001t0016g0094	1	460	0.0022	0	c.81 others(4): Show c.817G>A	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	817	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792184	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0229 a0001c0001t0017g0229	1	460	0.0022	0	c.72 others(4): Show c.724G>A	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	724	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792472	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02027.hp1 HG02040.hp2 HG02056.hp1 others(11): Show HG02027.hp1 HG02040.hp2 HG02056.hp1 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02523.hp2 HG04184.hp1 NA18612.hp1 NA18946.hp2 NA18951.hp1 NA18982.hp2 NA18986.hp1 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0009 a0001c0001t0006g0013 a0001c0001t0006g0087 others(2): Show a0001c0001t0006g0009 a0001c0001t0006g0013 a0001c0001t0006g0087 a0001c0001t0006g0101 a0001c0001t0006g0158	14	460	0.0304	0	c.43 others(4): Show c.436G>C	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	436	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792483	T T	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00408.hp1 HG00544.hp2 HG00673.hp1 others(18): Show HG00408.hp1 HG00544.hp2 HG00673.hp1 HG02723.hp2 HG02809.hp1 HG02970.hp2 HG03017.hp2 HG03453.hp2 NA18906.hp1 NA18945.hp2 NA18954.hp2 NA18955.hp1 NA18971.hp2 NA18985.hp2 NA19000.hp1 NA19001.hp2 NA19003.hp2 NA19010.hp2 NA19065.hp2 NA19087.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0010 a0001c0001t0004 a0001c0001t0010	a0001c0001t0004g0027 a0001c0001t0004g0042 a0001c0001t0004g0061 others(12): Show a0001c0001t0004g0027 a0001c0001t0004g0042 a0001c0001t0004g0061 a0001c0001t0004g0070 a0001c0001t0004g0084 a0001c0001t0004g0126 a0001c0001t0004g0129 a0001c0001t0004g0150 a0001c0001t0004g0191 a0001c0001t0004g0210 a0001c0001t0004g0224 a0001c0001t0004g0226 a0001c0001t0004g0232 a0001c0001t0004g0240 a0001c0001t0010g0064	21	460	0.0457	0	c.42 others(4): Show c.425A>G	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	425	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792553	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0243 a0001c0001t0019g0243	1	460	0.0022	0	c.35 others(4): Show c.355G>C	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	355	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792565	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01099.hp2 HG02257.hp2 HG02622.hp1 others(3): Show HG01099.hp2 HG02257.hp2 HG02622.hp1 HG03516.hp2 NA18522.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0023 a0001c0001t0008g0086 a0001c0001t0008g0091 others(1): Show a0001c0001t0008g0023 a0001c0001t0008g0086 a0001c0001t0008g0091 a0001c0001t0008g0202	6	460	0.0130	0	c.34 others(4): Show c.343A>T	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	343	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792618	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02257.hp1 NA18962.hp2 NA18966.hp2 others(6): Show HG02257.hp1 NA18962.hp2 NA18966.hp2 NA18991.hp1 NA19002.hp1 NA19054.hp1 NA19062.hp1 NA19075.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0002t0007 a0001c0001t0007 a0001c0002t0007	a0001c0001t0007g0148 a0001c0002t0007g0038 a0001c0002t0007g0071 others(4): Show a0001c0001t0007g0148 a0001c0002t0007g0038 a0001c0002t0007g0071 a0001c0002t0007g0095 a0001c0002t0007g0103 a0001c0002t0007g0186 a0001c0002t0007g0231	9	460	0.0196	0	c.29 others(4): Show c.290G>A	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	290	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792658	C C	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0094 a0001c0001t0016g0094	1	460	0.0022	0	c.25 others(4): Show c.250G>C	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	250	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792671	AT AT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00280.hp1 HG00733.hp2 HG01109.hp1 others(34): Show HG00280.hp1 HG00733.hp2 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01243.hp2 HG02004.hp2 HG02165.hp1 HG02280.hp2 HG02630.hp2 HG02683.hp1 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03225.hp1 HG03486.hp1 HG03669.hp2 HG03688.hp2 HG03834.hp1 NA18522.hp2 NA18955.hp2 NA18959.hp1 NA18975.hp1 NA19004.hp1 NA19030.hp1 NA19078.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0012 a0001c0001t0014 others(1): Show a0001c0001t0003 a0001c0001t0012 a0001c0001t0014 a0001c0002t0011	a0001c0001t0003g0024 a0001c0001t0003g0030 a0001c0001t0003g0053 others(25): Show a0001c0001t0003g0024 a0001c0001t0003g0030 a0001c0001t0003g0053 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0088 a0001c0001t0003g0092 a0001c0001t0003g0093 a0001c0001t0003g0112 a0001c0001t0003g0119 a0001c0001t0003g0120 a0001c0001t0003g0127 a0001c0001t0003g0133 a0001c0001t0003g0136 a0001c0001t0003g0139 a0001c0001t0003g0153 a0001c0001t0003g0169 a0001c0001t0003g0184 a0001c0001t0003g0197 a0001c0001t0003g0199 a0001c0001t0003g0200 a0001c0001t0003g0207 a0001c0001t0003g0209 a0001c0001t0003g0225 a0001c0001t0003g0235 a0001c0001t0012g0067 a0001c0001t0014g0140 a0001c0002t0011g0059	37	460	0.0804	-1	c.23 others(5): Show c.236delA	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	236	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792745	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0142 a0001c0001t0015g0142	1	460	0.0022	0	c.16 others(4): Show c.163T>A	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	163	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792758	T T	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00438.hp2 HG00609.hp1 HG00609.hp2 others(81): Show HG00438.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00733.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01243.hp1 HG01496.hp2 HG01515.hp1 HG01975.hp2 HG02015.hp1 HG02027.hp2 HG02040.hp1 HG02055.hp2 HG02071.hp2 HG02109.hp1 HG02109.hp2 HG02165.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp2 HG02717.hp1 HG03017.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03927.hp2 HG04204.hp2 HG04228.hp2 NA18612.hp2 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18943.hp2 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18952.hp1 NA18957.hp1 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18963.hp1 NA18965.hp2 NA18969.hp1 NA18970.hp1 NA18973.hp2 NA18974.hp1 NA18978.hp1 NA18978.hp2 NA18981.hp1 NA18987.hp1 NA18988.hp2 NA18989.hp2 NA18991.hp2 NA18993.hp2 NA18994.hp2 NA18995.hp1 NA18997.hp1 NA19002.hp2 NA19005.hp1 NA19011.hp1 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19063.hp2 NA19064.hp2 NA19066.hp1 NA19075.hp2 NA19079.hp1 NA19082.hp1 NA19084.hp2 NA19088.hp1 NA19091.hp2 NA20129.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0012 a0001c0001t0013 others(3): Show a0001c0001t0002 a0001c0001t0012 a0001c0001t0013 a0001c0001t0019 a0001c0001t0020 a0001c0002t0002	a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0011 others(42): Show a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0011 a0001c0001t0002g0014 a0001c0001t0002g0021 a0001c0001t0002g0031 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0073 a0001c0001t0002g0079 a0001c0001t0002g0102 a0001c0001t0002g0107 a0001c0001t0002g0117 a0001c0001t0002g0121 a0001c0001t0002g0128 a0001c0001t0002g0135 a0001c0001t0002g0138 a0001c0001t0002g0157 a0001c0001t0002g0160 a0001c0001t0002g0162 a0001c0001t0002g0168 a0001c0001t0002g0170 a0001c0001t0002g0174 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0187 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0192 a0001c0001t0002g0194 a0001c0001t0002g0196 a0001c0001t0002g0211 a0001c0001t0002g0213 a0001c0001t0002g0216 a0001c0001t0002g0222 a0001c0001t0002g0230 a0001c0001t0012g0067 a0001c0001t0013g0167 a0001c0001t0019g0243 a0001c0001t0020g0250 a0001c0002t0002g0164	84	460	0.1826	0	c.15 others(4): Show c.150A>T	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	150	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792819	A A	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0140 a0001c0001t0014g0140	1	460	0.0022	0	c.89 others(3): Show c.89T>C	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	89	chr7	TogoVar
AGR2_chr7_16786811_16809999	16792854	C C	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0167 a0001c0001t0013g0167	1	460	0.0022	0	c.54 others(3): Show c.54G>A	AGR2	ENSG00000106541.12	transcript	ENST00000419304.7	protein_coding	8/8	54	chr7	TogoVar
AGR3_chr7_16854412_16886983	16859517	A A	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01243.hp2 HG02622.hp2 HG02717.hp2 others(9): Show HG01243.hp2 HG02622.hp2 HG02717.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02976.hp2 HG03209.hp1 HG03453.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0003 a0001c0001t0003 a0001c0002t0003	a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0128 others(9): Show a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0128 a0001c0001t0003g0130 a0001c0001t0003g0158 a0001c0001t0003g0181 a0001c0001t0003g0226 a0001c0001t0003g0259 a0001c0002t0003g0202 a0001c0002t0003g0255 a0001c0002t0003g0256 a0001c0002t0003g0313	12	458	0.0262	0	c.65 others(3): Show c.65T>A	AGR3	ENSG00000173467.9	transcript	ENST00000310398.7	protein_coding	8/8	65	chr7	TogoVar
AGR3_chr7_16854412_16886983	16859565	C C	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0251 a0001c0001t0004g0251	1	458	0.0022	0	c.17 others(3): Show c.17G>T	AGR3	ENSG00000173467.9	transcript	ENST00000310398.7	protein_coding	8/8	17	chr7	TogoVar

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