Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
AEBP1_chr7_44099345_44119560	44104494	C C	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02080.hp1 HG02080.hp1	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0005 a0003c0002t0005	a0003c0002t0005g0002 a0003c0002t0005g0002	1	426	0.0024	0	c.-17 others(4): Show c.-172C>A	AEBP1	ENSG00000106624.11	transcript	ENST00000223357.8	protein_coding	1/21	172		chr7	TogoVar
AEBP2_chr12_19434492_19527227	19439507	G G	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0377 a0001c0001t0048g0377	1	404	0.0025	0	c.-19 others(4): Show c.-193G>T	AEBP2	ENSG00000139154.16	transcript	ENST00000266508.14	protein_coding	1/8	193		chr12	TogoVar
AEBP2_chr12_19434492_19527227	19439666	G G	GGGA GGGA	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00323.hp2 HG00558.hp2 HG00597.hp2 others(130): Show HG00323.hp2 HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00735.hp2 HG01069.hp2 HG01071.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp2 HG01169.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp2 HG01934.hp1 HG02015.hp2 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp1 HG02071.hp2 HG02074.hp2 HG02080.hp2 HG02083.hp1 HG02129.hp2 HG02132.hp1 HG02145.hp1 HG02155.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02486.hp1 HG02523.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02735.hp2 HG02809.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp2 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03490.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03654.hp2 HG03710.hp1 HG03831.hp1 HG04115.hp1 HG04184.hp1 HG04204.hp2 HG04228.hp2 NA18522.hp2 NA18906.hp1 NA18944.hp1 NA18949.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp2 NA18955.hp2 NA18956.hp2 NA18957.hp1 NA18960.hp2 NA18962.hp1 NA18964.hp1 NA18968.hp2 NA18972.hp1 NA18973.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp2 NA18982.hp1 NA18983.hp2 NA18985.hp2 NA18988.hp2 NA18990.hp2 NA18992.hp1 NA18994.hp1 NA18995.hp1 NA18998.hp1 NA19000.hp1 NA19004.hp2 NA19006.hp1 NA19006.hp2 NA19007.hp1 NA19030.hp1 NA19054.hp2 NA19064.hp1 NA19066.hp1 NA19066.hp2 NA19068.hp2 NA19070.hp1 NA19074.hp2 NA19079.hp1 NA19091.hp1 NA20129.hp2 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 others(19): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 a0001c0001t0014 a0001c0001t0016 a0001c0001t0019 a0001c0001t0020 a0001c0001t0023 a0001c0001t0039 a0001c0001t0041 a0001c0001t0042 a0001c0001t0046 a0001c0001t0047 a0001c0002t0001 a0001c0002t0010 a0001c0002t0038 a0001c0002t0040 a0001c0002t0043 a0001c0002t0045 a0001c0003t0001 a0001c0003t0044 a0001c0005t0023	a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0052 others(130): Show a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0055 a0001c0001t0001g0061 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0253 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0006g0005 a0001c0001t0006g0006 a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0011 a0001c0001t0006g0012 a0001c0001t0006g0013 a0001c0001t0006g0014 a0001c0001t0006g0015 a0001c0001t0006g0016 a0001c0001t0006g0017 a0001c0001t0006g0018 a0001c0001t0006g0019 a0001c0001t0006g0021 a0001c0001t0006g0022 a0001c0001t0006g0024 a0001c0001t0006g0026 a0001c0001t0006g0028 a0001c0001t0010g0060 a0001c0001t0010g0100 a0001c0001t0010g0103 a0001c0001t0010g0254 a0001c0001t0014g0020 a0001c0001t0014g0025 a0001c0001t0014g0027 a0001c0001t0014g0030 a0001c0001t0014g0031 a0001c0001t0016g0035 a0001c0001t0016g0036 a0001c0001t0016g0038 a0001c0001t0016g0039 a0001c0001t0019g0034 a0001c0001t0019g0037 a0001c0001t0019g0040 a0001c0001t0020g0227 a0001c0001t0020g0263 a0001c0001t0020g0264 a0001c0001t0023g0309 a0001c0001t0039g0023 a0001c0001t0041g0251 a0001c0001t0042g0243 a0001c0001t0046g0032 a0001c0001t0047g0123 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0056 a0001c0002t0001g0058 a0001c0002t0001g0063 a0001c0002t0001g0065 a0001c0002t0001g0068 a0001c0002t0001g0069 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0072 a0001c0002t0001g0073 a0001c0002t0001g0076 a0001c0002t0001g0081 a0001c0002t0001g0082 a0001c0002t0001g0083 a0001c0002t0001g0084 a0001c0002t0001g0085 a0001c0002t0001g0086 a0001c0002t0001g0087 a0001c0002t0001g0088 a0001c0002t0001g0089 a0001c0002t0001g0102 a0001c0002t0001g0109 a0001c0002t0001g0111 a0001c0002t0001g0115 a0001c0002t0001g0116 a0001c0002t0001g0124 a0001c0002t0001g0125 a0001c0002t0001g0126 a0001c0002t0001g0127 a0001c0002t0001g0238 a0001c0002t0010g0062 a0001c0002t0010g0067 a0001c0002t0010g0107 a0001c0002t0010g0110 a0001c0002t0038g0059 a0001c0002t0040g0050 a0001c0002t0043g0064 a0001c0002t0045g0120 a0001c0003t0001g0250 a0001c0003t0001g0252 a0001c0003t0044g0249 a0001c0005t0023g0033	133	404	0.3292	3	c.-14 others(10): Show c.-14_-12dupGAG	AEBP2	ENSG00000139154.16	transcript	ENST00000266508.14	protein_coding	1/8	11	INFO_REALIGN_3_PRIME	chr12	TogoVar
AEBP2_chr12_19434492_19527227	19439666	GGGA GGGA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00140.hp2 HG00323.hp1 HG00408.hp1 others(137): Show HG00140.hp2 HG00323.hp1 HG00408.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00738.hp1 HG01074.hp1 HG01099.hp1 HG01099.hp2 HG01106.hp2 HG01109.hp2 HG01123.hp2 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01192.hp2 HG01243.hp2 HG01257.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp2 HG01496.hp2 HG01515.hp1 HG01981.hp1 HG02015.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp2 HG02074.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp2 HG02155.hp2 HG02165.hp2 HG02257.hp1 HG02293.hp1 HG02300.hp2 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02615.hp1 HG02630.hp1 HG02723.hp1 HG02738.hp2 HG02818.hp2 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03654.hp1 HG03704.hp1 HG03831.hp2 HG03834.hp2 HG03942.hp1 HG04115.hp2 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18944.hp2 NA18945.hp2 NA18946.hp1 NA18948.hp1 NA18948.hp2 NA18950.hp2 NA18953.hp1 NA18954.hp2 NA18956.hp1 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18963.hp1 NA18965.hp1 NA18965.hp2 NA18967.hp2 NA18968.hp1 NA18972.hp2 NA18973.hp1 NA18974.hp2 NA18979.hp1 NA18980.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp2 NA18995.hp2 NA18999.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19012.hp2 NA19054.hp1 NA19057.hp1 NA19057.hp2 NA19064.hp2 NA19065.hp2 NA19068.hp1 NA19070.hp2 NA19077.hp1 NA19077.hp2 NA19079.hp2 NA19081.hp2 NA19084.hp1 NA19085.hp1 NA19086.hp2 NA19091.hp2 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 others(12): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0012 a0001c0001t0021 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0028 a0001c0001t0029 a0001c0001t0030 a0001c0001t0048	a0001c0001t0003g0307 a0001c0001t0003g0310 a0001c0001t0003g0311 others(136): Show a0001c0001t0003g0307 a0001c0001t0003g0310 a0001c0001t0003g0311 a0001c0001t0003g0312 a0001c0001t0003g0313 a0001c0001t0003g0314 a0001c0001t0003g0321 a0001c0001t0003g0322 a0001c0001t0003g0323 a0001c0001t0003g0328 a0001c0001t0003g0329 a0001c0001t0003g0330 a0001c0001t0003g0334 a0001c0001t0003g0336 a0001c0001t0003g0338 a0001c0001t0003g0339 a0001c0001t0003g0340 a0001c0001t0003g0341 a0001c0001t0003g0342 a0001c0001t0003g0343 a0001c0001t0003g0345 a0001c0001t0003g0346 a0001c0001t0003g0347 a0001c0001t0003g0350 a0001c0001t0003g0353 a0001c0001t0003g0354 a0001c0001t0003g0355 a0001c0001t0003g0356 a0001c0001t0003g0357 a0001c0001t0003g0358 a0001c0001t0003g0359 a0001c0001t0003g0361 a0001c0001t0003g0363 a0001c0001t0003g0364 a0001c0001t0003g0365 a0001c0001t0003g0368 a0001c0001t0003g0369 a0001c0001t0003g0370 a0001c0001t0003g0371 a0001c0001t0003g0373 a0001c0001t0003g0374 a0001c0001t0003g0375 a0001c0001t0003g0376 a0001c0001t0003g0378 a0001c0001t0003g0379 a0001c0001t0003g0380 a0001c0001t0003g0381 a0001c0001t0003g0383 a0001c0001t0003g0390 a0001c0001t0003g0397 a0001c0001t0003g0398 a0001c0001t0003g0399 a0001c0001t0004g0004 a0001c0001t0004g0194 a0001c0001t0004g0265 a0001c0001t0004g0266 a0001c0001t0004g0267 a0001c0001t0004g0268 a0001c0001t0004g0271 a0001c0001t0004g0272 a0001c0001t0004g0273 a0001c0001t0004g0274 a0001c0001t0004g0276 a0001c0001t0004g0277 a0001c0001t0004g0278 a0001c0001t0004g0279 a0001c0001t0004g0280 a0001c0001t0004g0281 a0001c0001t0004g0282 a0001c0001t0004g0283 a0001c0001t0004g0284 a0001c0001t0004g0285 a0001c0001t0004g0287 a0001c0001t0004g0289 a0001c0001t0004g0290 a0001c0001t0004g0291 a0001c0001t0004g0292 a0001c0001t0004g0294 a0001c0001t0004g0296 a0001c0001t0004g0297 a0001c0001t0004g0298 a0001c0001t0004g0300 a0001c0001t0004g0302 a0001c0001t0004g0303 a0001c0001t0004g0304 a0001c0001t0004g0305 a0001c0001t0004g0306 a0001c0001t0004g0317 a0001c0001t0004g0318 a0001c0001t0004g0320 a0001c0001t0004g0385 a0001c0001t0004g0388 a0001c0001t0004g0396 a0001c0001t0007g0003 a0001c0001t0007g0315 a0001c0001t0007g0316 a0001c0001t0007g0348 a0001c0001t0007g0386 a0001c0001t0007g0387 a0001c0001t0007g0389 a0001c0001t0007g0391 a0001c0001t0007g0392 a0001c0001t0007g0393 a0001c0001t0007g0394 a0001c0001t0007g0395 a0001c0001t0007g0400 a0001c0001t0008g0325 a0001c0001t0008g0327 a0001c0001t0008g0331 a0001c0001t0008g0332 a0001c0001t0008g0351 a0001c0001t0008g0360 a0001c0001t0008g0367 a0001c0001t0008g0372 a0001c0001t0008g0382 a0001c0001t0008g0384 a0001c0001t0011g0275 a0001c0001t0011g0286 a0001c0001t0011g0293 a0001c0001t0011g0295 a0001c0001t0011g0299 a0001c0001t0011g0301 a0001c0001t0011g0319 a0001c0001t0012g0324 a0001c0001t0012g0333 a0001c0001t0012g0335 a0001c0001t0012g0337 a0001c0001t0012g0362 a0001c0001t0012g0366 a0001c0001t0021g0269 a0001c0001t0021g0270 a0001c0001t0024g0232 a0001c0001t0025g0288 a0001c0001t0026g0344 a0001c0001t0027g0352 a0001c0001t0028g0308 a0001c0001t0029g0326 a0001c0001t0030g0349 a0001c0001t0048g0377	140	404	0.3465	-3	c.-14 others(10): Show c.-14_-12delGAG	AEBP2	ENSG00000139154.16	transcript	ENST00000266508.14	protein_coding	1/8	12	INFO_REALIGN_3_PRIME	chr12	TogoVar
AEN_chr15_88616340_88637281	88621350	C C	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01891.hp2 HG03831.hp1 HG01891.hp2 HG03831.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0029 a0001c0003t0029	a0001c0003t0029g0003 a0001c0003t0029g0003	2	440	0.0046	0	c.-97 others(3): Show c.-97C>G	AEN	ENSG00000181026.15	transcript	ENST00000332810.4	protein_coding	1/4	4860		chr15	TogoVar
AEN_chr15_88616340_88637281	88621378	T T	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0087 a0001c0001t0030g0087	1	440	0.0023	0	c.-69 others(3): Show c.-69T>G	AEN	ENSG00000181026.15	transcript	ENST00000332810.4	protein_coding	1/4	4832		chr15	TogoVar
AFAP1L1_chr5_149266859_149348637	149271864	G G	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0116 a0001c0001t0015g0116	1	286	0.0035	0	c.-10 others(4): Show c.-105G>A	AFAP1L1	ENSG00000157510.14	transcript	ENST00000296721.9	protein_coding	1/19	105		chr5	TogoVar
AFAP1_chr4_7753714_7944861	7939660	G G	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0070 a0001c0001t0070	a0001c0001t0070g0312 a0001c0001t0070g0312	1	318	0.0031	0	c.-7C others(2): Show c.-7C>G	AFAP1	ENSG00000196526.11	transcript	ENST00000420658.6	protein_coding	1/18	67582		chr4	TogoVar
AFAP1_chr4_7753714_7944861	7939671	C C	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02015.hp1 HG02015.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0036 a0001c0007t0036	a0001c0007t0036g0005 a0001c0007t0036g0005	1	318	0.0031	0	c.-18 others(3): Show c.-18G>A	AFAP1	ENSG00000196526.11	transcript	ENST00000420658.6	protein_coding	1/18	67593		chr4	TogoVar
AFAP1_chr4_7753714_7944861	7939779	G G	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01433.hp1 HG02647.hp1 NA19240.hp2 HG01433.hp1 HG02647.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0031 a0002c0039 a0002c0040 a0001c0031 a0002c0039 a0002c0040	a0001c0031t0071 a0002c0039t0072 a0002c0040t0073 a0001c0031t0071 a0002c0039t0072 a0002c0040t0073	a0001c0031t0071g0313 a0002c0039t0072g0314 a0002c0040t0073g0315 a0001c0031t0071g0313 a0002c0039t0072g0314 a0002c0040t0073g0315	3	318	0.0094	0	c.-12 others(4): Show c.-126C>T	AFAP1	ENSG00000196526.11	transcript	ENST00000420658.6	protein_coding	1/18	67701		chr4	TogoVar
AFAP1_chr4_7753714_7944861	7939855	G G	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02723.hp1 HG03209.hp2 HG03225.hp1 others(1): Show HG02723.hp1 HG03209.hp2 HG03225.hp1 HG03453.hp1	a0001 a0006 a0001 a0006	a0001c0010 a0006c0046 a0001c0010 a0006c0046	a0001c0010t0012 a0006c0046t0012 a0001c0010t0012 a0006c0046t0012	a0001c0010t0012g0002 a0001c0010t0012g0003 a0001c0010t0012g0004 others(1): Show a0001c0010t0012g0002 a0001c0010t0012g0003 a0001c0010t0012g0004 a0006c0046t0012g0001	4	318	0.0126	0	c.-20 others(4): Show c.-202C>A	AFAP1	ENSG00000196526.11	transcript	ENST00000420658.6	protein_coding	1/18	67777		chr4	TogoVar
AFDN_chr6_167821911_167977023	167826933	G G	GGCGGC GGCGGC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01109.hp2 HG01891.hp2 HG02004.hp1 HG01109.hp2 HG01891.hp2 HG02004.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0007 a0002c0017 a0001c0002 a0001c0007 a0002c0017	a0001c0002t0005 a0001c0007t0005 a0002c0017t0005 a0001c0002t0005 a0001c0007t0005 a0002c0017t0005	a0001c0002t0005g0156 a0001c0007t0005g0273 a0002c0017t0005g0285 a0001c0002t0005g0156 a0001c0007t0005g0273 a0002c0017t0005g0285	3	326	0.0092	5	c.-18 others(14): Show c.-185_-181dupCGCGG	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	180	INFO_REALIGN_3_PRIME	chr6	TogoVar
AFDN_chr6_167821911_167977023	167826947	G G	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18975.hp2 NA18975.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0021 a0001c0003t0021	a0001c0003t0021g0062 a0001c0003t0021g0062	1	326	0.0031	0	c.-18 others(4): Show c.-186G>T	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	186		chr6	TogoVar
AFDN_chr6_167821911_167977023	167826963	A A	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02451.hp2 HG02615.hp2 NA18906.hp2 others(1): Show HG02451.hp2 HG02615.hp2 NA18906.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0004 a0001c0016t0020 a0001c0001t0004 a0001c0016t0020	a0001c0001t0004g0185 a0001c0001t0004g0186 a0001c0001t0004g0187 others(1): Show a0001c0001t0004g0185 a0001c0001t0004g0186 a0001c0001t0004g0187 a0001c0016t0020g0112	4	326	0.0123	0	c.-17 others(4): Show c.-170A>C	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	170		chr6	TogoVar
AFDN_chr6_167821911_167977023	167826993	GGCCGCGG others(11): Show GGCCGCGGAGGCGGAGGCA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02895.hp2 HG02897.hp2 HG02895.hp2 HG02897.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0008 a0001c0005t0008	a0001c0005t0008g0200 a0001c0005t0008g0201 a0001c0005t0008g0200 a0001c0005t0008g0201	2	326	0.0061	-18	c.-12 others(27): Show c.-122_-105delAGCCGCGGAGGCGGAGGC	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	105	INFO_REALIGN_3_PRIME	chr6	TogoVar
AFDN_chr6_167821911_167977023	167826996	C C	CGCGGAGG others(17): Show CGCGGAGGCGGAGGCAGCCGCGGAG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0009 a0003c0009t0009	a0003c0009t0009g0168 a0003c0009t0009g0168	1	326	0.0031	24	c.-12 others(33): Show c.-126_-103dupAGGCAGCCGCGGAGGCGGAGGCGG	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	102	INFO_REALIGN_3_PRIME	chr6	TogoVar
AFDN_chr6_167821911_167977023	167827002	GGCGGAGG others(5): Show GGCGGAGGCAGCC	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0019 a0001c0004t0019	a0001c0004t0019g0118 a0001c0004t0019g0118	1	326	0.0031	-12	c.-12 others(21): Show c.-122_-111delAGCCGCGGAGGC	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	111	INFO_REALIGN_3_PRIME	chr6	TogoVar
AFDN_chr6_167821911_167977023	167827074	C C	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0010 a0001c0004t0010	a0001c0004t0010g0313 a0001c0004t0010g0313	1	326	0.0031	0	c.-59 others(3): Show c.-59C>A	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	59		chr6	TogoVar
AFDN_chr6_167821911_167977023	167827085	C C	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0012 a0012	a0012c0023 a0012c0023	a0012c0023t0011 a0012c0023t0011	a0012c0023t0011g0272 a0012c0023t0011g0272	1	326	0.0031	0	c.-48 others(3): Show c.-48C>A	AFDN	ENSG00000130396.22	transcript	ENST00000683244.1	protein_coding	1/34	48		chr6	TogoVar
AFF1_chr4_86930011_87146039	86935131	G G	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0069 a0001c0016t0069	a0001c0016t0069g0088 a0001c0016t0069g0088	1	294	0.0034	0	c.-14 others(4): Show c.-146G>T	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	1/21	13403		chr4	TogoVar
AFF1_chr4_86930011_87146039	86935155	C C	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02083.hp2 NA18998.hp1 HG02083.hp2 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0129 a0001c0001t0031g0131 a0001c0001t0031g0129 a0001c0001t0031g0131	2	294	0.0068	0	c.-12 others(4): Show c.-122C>T	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	1/21	13379		chr4	TogoVar
AFF1_chr4_86930011_87146039	86935201	G G	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01074.hp1 HG01109.hp1 HG01496.hp1 others(9): Show HG01074.hp1 HG01109.hp1 HG01496.hp1 HG01993.hp1 HG02132.hp1 HG02135.hp2 NA18965.hp1 NA18971.hp1 NA18988.hp2 NA18992.hp1 NA18999.hp2 NA19055.hp2	a0001 a0012 a0001 a0012	a0001c0001 a0012c0021 a0001c0001 a0012c0021	a0001c0001t0009 a0001c0001t0029 a0001c0001t0030 others(1): Show a0001c0001t0009 a0001c0001t0029 a0001c0001t0030 a0012c0021t0030	a0001c0001t0009g0208 a0001c0001t0009g0216 a0001c0001t0009g0217 others(9): Show a0001c0001t0009g0208 a0001c0001t0009g0216 a0001c0001t0009g0217 a0001c0001t0009g0218 a0001c0001t0009g0219 a0001c0001t0009g0230 a0001c0001t0009g0232 a0001c0001t0009g0233 a0001c0001t0029g0229 a0001c0001t0029g0236 a0001c0001t0030g0234 a0012c0021t0030g0231	12	294	0.0408	0	c.-76 others(3): Show c.-76G>T	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	1/21	13333		chr4	TogoVar
AFF1_chr4_86930011_87146039	86935213	G G	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02970.hp1 HG03195.hp2 HG02970.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0033 a0001c0001t0032 a0001c0001t0033	a0001c0001t0032g0092 a0001c0001t0033g0091 a0001c0001t0032g0092 a0001c0001t0033g0091	2	294	0.0068	0	c.-64 others(3): Show c.-64G>A	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	1/21	13321		chr4	TogoVar
AFF2_chrX_148495617_149005663	148500616	CGCCGCCG others(14): Show CGCCGCCGCCTGTGCAGCCGCT	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0081 a0001c0001t0025g0081	1	169	0.0059	-21	c.-47 others(30): Show c.-472_-452delTGTGCAGCCGCTGCCGCCGCC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	452	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500631	A A	AGCCGCCG others(2): Show AGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0026 a0001c0003t0026	a0001c0003t0026g0157 a0001c0003t0026g0157	1	169	0.0059	9	c.-46 others(18): Show c.-462_-461insCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	461	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500631	AGCCGCTG others(17): Show AGCCGCTGCCGCCGCCGCCGCCGCC	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02056.hp1 HG06807.hp1 HG02056.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0027 a0001c0003t0028 a0001c0001t0027 a0001c0003t0028	a0001c0001t0027g0017 a0001c0003t0028g0005 a0001c0001t0027g0017 a0001c0003t0028g0005	2	169	0.0118	-24	c.-46 others(33): Show c.-461_-438delTGCCGCCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	438	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0026 a0001c0003t0026	a0001c0003t0026g0157 a0001c0003t0026g0157	1	169	0.0059	0	c.-46 others(4): Show c.-461T>C	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	461		chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCC TGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00140.hp1 HG00673.hp1 HG01106.hp1 others(16): Show HG00140.hp1 HG00673.hp1 HG01106.hp1 HG01928.hp1 HG02027.hp1 HG02280.hp2 HG02486.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02738.hp1 HG02896.hp1 HG03041.hp1 HG03098.hp1 NA18989.hp1 NA19007.hp1 NA19063.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0005 a0001c0001t0081 a0001c0001t0083 others(13): Show a0001c0001t0005 a0001c0001t0081 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085 a0001c0001t0086 a0001c0001t0088 a0001c0001t0089 a0001c0001t0090 a0001c0001t0092 a0001c0001t0093 a0001c0002t0082 a0001c0002t0087 a0001c0002t0091 a0001c0002t0094 a0001c0004t0095	a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0005g0021 others(16): Show a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0005g0021 a0001c0001t0005g0022 a0001c0001t0081g0052 a0001c0001t0083g0024 a0001c0001t0084g0030 a0001c0001t0085g0167 a0001c0001t0086g0031 a0001c0001t0088g0104 a0001c0001t0089g0110 a0001c0001t0090g0099 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0002t0082g0016 a0001c0002t0087g0147 a0001c0002t0091g0136 a0001c0002t0094g0106 a0001c0004t0095g0113	19	169	0.1124	3	c.-41 others(12): Show c.-416_-414dupCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCC TGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00639.hp1 HG00738.hp1 HG01256.hp1 others(16): Show HG00639.hp1 HG00738.hp1 HG01256.hp1 HG02129.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 NA18522.hp1 NA18948.hp1 NA18953.hp1 NA18959.hp1 NA18962.hp1 NA18966.hp1 NA19062.hp1 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007	a0001c0001t0002 a0001c0001t0015 a0001c0001t0016 others(7): Show a0001c0001t0002 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0076 a0001c0001t0077 a0001c0002t0018 a0001c0002t0078 a0001c0003t0079 a0001c0007t0080	a0001c0001t0002g0020 a0001c0001t0002g0029 a0001c0001t0002g0054 others(16): Show a0001c0001t0002g0020 a0001c0001t0002g0029 a0001c0001t0002g0054 a0001c0001t0002g0062 a0001c0001t0002g0085 a0001c0001t0002g0166 a0001c0001t0015g0032 a0001c0001t0015g0060 a0001c0001t0016g0154 a0001c0001t0016g0155 a0001c0001t0017g0040 a0001c0001t0017g0145 a0001c0001t0076g0153 a0001c0001t0077g0095 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0078g0152 a0001c0003t0079g0161 a0001c0007t0080g0162	19	169	0.1124	6	c.-41 others(15): Show c.-419_-414dupCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(2): Show TGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00621.hp1 HG01167.hp1 HG01192.hp1 others(26): Show HG00621.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01258.hp1 HG02572.hp1 HG02735.hp1 HG02886.hp1 HG03041.hp2 HG03654.hp1 HG04228.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18945.hp1 NA18960.hp1 NA18961.hp1 NA18970.hp1 NA18977.hp1 NA18984.hp1 NA18995.hp1 NA19004.hp1 NA19009.hp1 NA19012.hp1 NA19058.hp1 NA19060.hp1 NA19066.hp1 NA19079.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 others(13): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0014 a0001c0001t0064 a0001c0001t0065 a0001c0001t0066 a0001c0001t0067 a0001c0001t0068 a0001c0001t0069 a0001c0001t0070 a0001c0001t0071 a0001c0001t0073 a0001c0001t0074 a0001c0002t0072 a0001c0004t0075	a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 others(26): Show a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0003g0042 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0003g0086 a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0064g0084 a0001c0001t0065g0056 a0001c0001t0066g0015 a0001c0001t0067g0057 a0001c0001t0068g0169 a0001c0001t0069g0047 a0001c0001t0070g0044 a0001c0001t0071g0028 a0001c0001t0073g0074 a0001c0001t0074g0033 a0001c0002t0072g0018 a0001c0004t0075g0004	29	169	0.1716	9	c.-42 others(18): Show c.-422_-414dupCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(5): Show TGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01074.hp1 HG02074.hp1 HG02698.hp1 others(8): Show HG01074.hp1 HG02074.hp1 HG02698.hp1 HG03490.hp1 HG03942.hp1 NA18965.hp1 NA18982.hp1 NA18986.hp1 NA18990.hp1 NA19000.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0057 a0001c0001t0058 others(5): Show a0001c0001t0004 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0062 a0001c0001t0063	a0001c0001t0004g0041 a0001c0001t0004g0043 a0001c0001t0004g0045 others(8): Show a0001c0001t0004g0041 a0001c0001t0004g0043 a0001c0001t0004g0045 a0001c0001t0004g0100 a0001c0001t0057g0135 a0001c0001t0058g0097 a0001c0001t0059g0014 a0001c0001t0060g0067 a0001c0001t0061g0098 a0001c0001t0062g0087 a0001c0001t0063g0053	11	169	0.0651	12	c.-42 others(21): Show c.-425_-414dupCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(8): Show TGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00609.hp1 HG00639.hp2 HG01099.hp1 others(11): Show HG00609.hp1 HG00639.hp2 HG01099.hp1 HG01261.hp1 HG01943.hp1 HG01978.hp1 HG02040.hp1 HG02280.hp1 HG04199.hp1 NA18971.hp1 NA18994.hp1 NA19005.hp1 NA19056.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0001t0013 a0001c0001t0048 others(8): Show a0001c0001t0007 a0001c0001t0013 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0055 a0001c0001t0056 a0001c0002t0054	a0001c0001t0007g0038 a0001c0001t0007g0048 a0001c0001t0007g0089 others(11): Show a0001c0001t0007g0038 a0001c0001t0007g0048 a0001c0001t0007g0089 a0001c0001t0013g0034 a0001c0001t0013g0072 a0001c0001t0048g0013 a0001c0001t0049g0105 a0001c0001t0050g0026 a0001c0001t0051g0069 a0001c0001t0052g0064 a0001c0001t0053g0027 a0001c0001t0055g0025 a0001c0001t0056g0023 a0001c0002t0054g0133	14	169	0.0828	15	c.-42 others(24): Show c.-428_-414dupCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(11): Show TGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01243.hp1 HG03486.hp1 NA18974.hp1 others(4): Show HG01243.hp1 HG03486.hp1 NA18974.hp1 NA18988.hp1 NA19043.hp1 NA19083.hp1 NA19085.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0003c0008 others(1): Show a0001c0001 a0001c0002 a0003c0008 a0004c0006	a0001c0001t0012 a0001c0001t0043 a0001c0001t0044 others(4): Show a0001c0001t0012 a0001c0001t0043 a0001c0001t0044 a0001c0001t0046 a0001c0002t0047 a0003c0008t0045 a0004c0006t0012	a0001c0001t0012g0168 a0001c0001t0043g0006 a0001c0001t0044g0127 others(4): Show a0001c0001t0012g0168 a0001c0001t0043g0006 a0001c0001t0044g0127 a0001c0001t0046g0165 a0001c0002t0047g0108 a0003c0008t0045g0010 a0004c0006t0012g0011	7	169	0.0414	18	c.-43 others(27): Show c.-431_-414dupCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(14): Show TGCCGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02257.hp1 HG02647.hp1 NA18967.hp1 others(1): Show HG02257.hp1 HG02647.hp1 NA18967.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0041 a0001c0001t0042 a0001c0001t0011 a0001c0001t0041 a0001c0001t0042	a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0041g0071 others(1): Show a0001c0001t0011g0112 a0001c0001t0011g0128 a0001c0001t0041g0071 a0001c0001t0042g0012	4	169	0.0237	21	c.-43 others(30): Show c.-434_-414dupCGCCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(17): Show TGCCGCCGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02809.hp2 HG02818.hp2 HG03579.hp1 others(2): Show HG02809.hp2 HG02818.hp2 HG03579.hp1 HG03688.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 others(2): Show a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0002t0040	a0001c0001t0036g0139 a0001c0001t0037g0037 a0001c0001t0038g0102 others(2): Show a0001c0001t0036g0139 a0001c0001t0037g0037 a0001c0001t0038g0102 a0001c0001t0039g0101 a0001c0002t0040g0111	5	169	0.0296	24	c.-43 others(33): Show c.-437_-414dupCGCCGCCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(20): Show TGCCGCCGCCGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0078 a0001c0001t0035g0078	1	169	0.0059	27	c.-44 others(36): Show c.-440_-414dupCGCCGCCGCCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(26): Show TGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0034 a0001c0002t0034	a0001c0002t0034g0077 a0001c0002t0034g0077	1	169	0.0059	33	c.-44 others(42): Show c.-446_-414dupCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(32): Show TGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0083 a0001c0001t0033g0083	1	169	0.0059	39	c.-45 others(48): Show c.-452_-414dupCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC CGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(41): Show TGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0032 a0001c0002t0032	a0001c0002t0032g0114 a0001c0002t0032g0114	1	169	0.0059	48	c.-41 others(57): Show c.-414_-413insCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	TGCC TGCC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02015.hp1 HG02083.hp1 HG02015.hp1 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0114 a0001c0001t0115 a0001c0001t0114 a0001c0001t0115	a0001c0001t0114g0079 a0001c0001t0115g0080 a0001c0001t0114g0079 a0001c0001t0115g0080	2	169	0.0118	-3	c.-41 others(12): Show c.-416_-414delCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	414	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	TGCCGCC TGCCGCC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01358.hp1 NA19082.hp1 HG01358.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0116 a0001c0001t0117 a0001c0001t0116 a0001c0001t0117	a0001c0001t0116g0075 a0001c0001t0117g0164 a0001c0001t0116g0075 a0001c0001t0117g0164	2	169	0.0118	-6	c.-41 others(15): Show c.-419_-414delCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	414	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	TGCCGCCG others(2): Show TGCCGCCGCC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG04115.hp1 HG04204.hp1 HG04115.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0118 a0001c0001t0119 a0001c0001t0118 a0001c0001t0119	a0001c0001t0118g0088 a0001c0001t0119g0061 a0001c0001t0118g0088 a0001c0001t0119g0061	2	169	0.0118	-9	c.-42 others(18): Show c.-422_-414delCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	414	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	TGCCGCCG others(5): Show TGCCGCCGCCGCC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18944.hp1 NA19070.hp1 NA18944.hp1 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0120 a0001c0001t0121 a0001c0001t0120 a0001c0001t0121	a0001c0001t0120g0035 a0001c0001t0121g0046 a0001c0001t0120g0035 a0001c0001t0121g0046	2	169	0.0118	-12	c.-42 others(21): Show c.-425_-414delCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	414	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500637	TGCCGCCG others(8): Show TGCCGCCGCCGCCGCC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02132.hp1 HG02135.hp1 NA18952.hp1 others(1): Show HG02132.hp1 HG02135.hp1 NA18952.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0122 a0001c0001t0123 a0001c0001t0024 a0001c0001t0122 a0001c0001t0123	a0001c0001t0024g0091 a0001c0001t0024g0093 a0001c0001t0122g0092 others(1): Show a0001c0001t0024g0091 a0001c0001t0024g0093 a0001c0001t0122g0092 a0001c0001t0123g0090	4	169	0.0237	-15	c.-42 others(24): Show c.-428_-414delCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	414	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500679	CGCCGCT CGCCGCT	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01884.hp1 HG01884.hp2 HG02630.hp2 HG01884.hp1 HG01884.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0029 a0001c0002t0031 a0001c0003t0030 a0001c0002t0029 a0001c0002t0031 a0001c0003t0030	a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0003t0030g0158 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0003t0030g0158	3	169	0.0178	-6	c.-41 others(15): Show c.-413_-408delTGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	408	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148500962	G G	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0064 a0001c0001t0064	a0001c0001t0064g0084 a0001c0001t0064g0084	1	169	0.0059	0	c.-13 others(4): Show c.-136G>A	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	136		chrX	TogoVar
AFF3_chr2_99540419_100147590	100129256	C C	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01167.hp2 HG03041.hp2 HG03130.hp2 others(3): Show HG01167.hp2 HG03041.hp2 HG03130.hp2 HG03516.hp2 HG04199.hp2 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0010 a0001c0001t0024 a0001c0001t0025 others(2): Show a0001c0001t0010 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0002c0002t0023	a0001c0001t0010g0055 a0001c0001t0010g0057 a0001c0001t0024g0058 others(3): Show a0001c0001t0010g0055 a0001c0001t0010g0057 a0001c0001t0024g0058 a0001c0001t0025g0053 a0001c0001t0026g0056 a0002c0002t0023g0054	6	100	0.0600	0	c.-17 others(4): Show c.-177G>A	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	2/25	24802		chr2	TogoVar
AFF3_chr2_99540419_100147590	100142531	C C	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01884.hp2 HG01891.hp1 HG02647.hp2 others(7): Show HG01884.hp2 HG01891.hp1 HG02647.hp2 HG02809.hp1 HG02922.hp2 HG02970.hp2 HG03139.hp2 HG03209.hp1 HG03516.hp1 NA18906.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 others(1): Show a0001c0001 a0001c0004 a0002c0002 a0002c0007	a0001c0001t0008 a0001c0001t0012 a0001c0001t0015 others(5): Show a0001c0001t0008 a0001c0001t0012 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0004t0014 a0002c0002t0013 a0002c0007t0008	a0001c0001t0008g0001 a0001c0001t0008g0009 a0001c0001t0012g0008 others(7): Show a0001c0001t0008g0001 a0001c0001t0008g0009 a0001c0001t0012g0008 a0001c0001t0015g0002 a0001c0001t0016g0003 a0001c0001t0017g0010 a0001c0004t0014g0004 a0002c0002t0013g0005 a0002c0007t0008g0006 a0002c0007t0008g0007	10	100	0.1000	0	c.-27 others(4): Show c.-275G>A	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	1/25	38077		chr2	TogoVar
AFF3_chr2_99540419_100147590	100142568	C C	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00099.hp2 HG01884.hp1 HG01884.hp2 others(16): Show HG00099.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG02615.hp1 HG02630.hp1 HG02647.hp2 HG02809.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03139.hp2 HG03209.hp1 HG03471.hp2 HG03516.hp1 HG03540.hp2 HG06807.hp2 NA18906.hp2 NA20129.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0004 a0001c0005 others(5): Show a0001c0001 a0001c0004 a0001c0005 a0001c0009 a0002c0002 a0002c0007 a0002c0013 a0005c0011	a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 others(14): Show a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0022 a0001c0004t0014 a0001c0004t0020 a0001c0005t0009 a0001c0009t0009 a0001c0009t0021 a0002c0002t0013 a0002c0002t0018 a0002c0007t0008 a0002c0013t0019 a0005c0011t0009	a0001c0001t0008g0001 a0001c0001t0008g0009 a0001c0001t0009g0018 others(16): Show a0001c0001t0008g0001 a0001c0001t0008g0009 a0001c0001t0009g0018 a0001c0001t0012g0008 a0001c0001t0015g0002 a0001c0001t0016g0003 a0001c0001t0017g0010 a0001c0001t0022g0019 a0001c0004t0014g0004 a0001c0004t0020g0011 a0001c0005t0009g0016 a0001c0009t0009g0017 a0001c0009t0021g0013 a0002c0002t0013g0005 a0002c0002t0018g0015 a0002c0007t0008g0006 a0002c0007t0008g0007 a0002c0013t0019g0014 a0005c0011t0009g0012	19	100	0.1900	0	c.-31 others(4): Show c.-312G>A	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	1/25	38114		chr2	TogoVar
AFF4_chr5_132870395_132968634	132963410	C C	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01255.hp1 HG01993.hp2 HG01255.hp1 HG01993.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0003 a0001c0002t0014g0004 a0001c0002t0014g0003 a0001c0002t0014g0004	2	392	0.0051	0	c.-15 others(4): Show c.-156G>A	AFF4	ENSG00000072364.13	transcript	ENST00000265343.10	protein_coding	1/21	26221		chr5	TogoVar

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