regionname | pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PTEN_chr10_87858625_87976930 | 87960876 | C | CT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp1 HG00323.hp1 HG00408.hp1 others(84): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0004a0001c0001t0006others(27): Show | a0001c0001t0002g0009a0001c0001t0002g0144a0001c0001t0002g0211others(84): Show | 87 | 322 | 0.2702 | 1 | c.802 others(6): Show |
PTEN | ENSG00000171862.15 | transcript | ENST00000371953.8 | protein_coding | 7/8 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | |||||
PTPN23_chr3_47376021_47418435 | 47410831 | A | AC | frameshift_variant | HIGH | HG00140.hp2 HG00597.hp1 HG00738.hp2 others(33): Show |
a0005a0006 | a0005c0007a0005c0010a0005c0029others(7): Show | a0005c0007t0001a0005c0010t0001a0005c0029t0001others(7): Show | a0005c0007t0001g0001a0005c0007t0001g0008a0005c0007t0001g0016others(31): Show | 36 | 332 | 0.1084 | 1 | c.304 others(5): Show |
p.Leu others(6): Show |
PTPN23 | ENSG00000076201.16 | transcript | ENST00000265562.5 | protein_coding | 20/25 | 3117/5237 | 3041/4911 | 1014/1636 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |
PTPN23_chr3_47376021_47418435 | 47411089 | A | AC | frameshift_variant | HIGH | HG00408.hp1 HG00544.hp1 HG00558.hp2 others(132): Show |
a0002a0004a0005others(6): Show | a0002c0003a0002c0008a0002c0009others(19): Show | a0002c0003t0001a0002c0008t0001a0002c0008t0002others(20): Show | a0002c0003t0001g0001a0002c0003t0001g0002a0002c0003t0001g0012others(118): Show | 135 | 332 | 0.4066 | 1 | c.329 others(5): Show |
p.Arg others(6): Show |
PTPN23 | ENSG00000076201.16 | transcript | ENST00000265562.5 | protein_coding | 20/25 | 3373/5237 | 3297/4911 | 1099/1636 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |
PTPRQ_chr12_80439235_80685273 | 80484408 | T | TTTTC | splice_acceptor_variant others(1): Show |
HIGH | HG00438.hp1 HG01074.hp2 HG01192.hp2 others(31): Show |
a0003a0005a0009others(14): Show | a0003c0003a0003c0079a0005c0004others(16): Show | a0003c0003t0001a0003c0003t0002a0003c0079t0001others(20): Show | a0003c0003t0001g0105a0003c0003t0001g0107a0003c0003t0002g0104others(31): Show | 34 | 178 | 0.1910 | 4 | c.118 others(17): Show |
PTPRQ | ENSG00000139304.16 | transcript | ENST00000644991.3 | protein_coding | 8/44 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | |||||
PVRIG_chr7_100214949_100226490 | 100221192 | A | ACT | frameshift_variant | HIGH | HG00323.hp1 HG01928.hp1 HG01943.hp2 others(13): Show |
a0003a0010 | a0003c0003a0010c0008 | a0003c0003t0002a0010c0008t0002 | a0003c0003t0002g0002a0010c0008t0002g0002 | 16 | 394 | 0.0406 | 2 | c.865 others(9): Show |
p.Pro others(5): Show |
PVRIG | ENSG00000213413.3 | transcript | ENST00000699088.1 | protein_coding | 5/5 | 889/1182 | 867/921 | 289/306 | INFO_REALIGN_3_PRIME | chr7 | TogoVar | |
RABL2A_chr2_113622266_113648392 | 113635063 | CG | C | frameshift_variant | HIGH | HG00438.hp1 HG00621.hp2 HG00735.hp2 others(38): Show |
a0002 | a0002c0002a0002c0003 | a0002c0002t0001a0002c0002t0010a0002c0002t0015others(2): Show | a0002c0002t0001g0003a0002c0002t0001g0005a0002c0002t0001g0025others(17): Show | 41 | 436 | 0.0940 | -1 | c.232 others(4): Show |
p.Ala others(4): Show |
RABL2A | ENSG00000144134.19 | transcript | ENST00000683472.1 | protein_coding | 5/9 | 420/2141 | 232/690 | 78/229 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | |
RECQL5_chr17_75621854_75672154 | 75630838 | C | CTG | splice_acceptor_variant others(1): Show |
HIGH | HG00140.hp2 HG00280.hp1 HG00280.hp2 others(144): Show |
a0001a0002a0004others(3): Show | a0001c0001a0001c0002a0001c0021others(6): Show | a0001c0001t0001a0001c0001t0010a0001c0002t0001others(9): Show | a0001c0001t0001g0001a0001c0001t0001g0005a0001c0001t0001g0011others(111): Show | 147 | 378 | 0.3889 | 2 | c.158 others(15): Show |
RECQL5 | ENSG00000108469.15 | transcript | ENST00000317905.10 | protein_coding | 11/19 | chr17 | TogoVar | ||||||
RENBP_chrX_153930269_153949643 | 153935312 | T | TG | frameshift_variant | HIGH | NA18941.hp1 NA18955.hp1 |
a0000a0014 | a0000c0020a0014c0021 | a0000c0020t0001a0014c0021t0002 | a0000c0020t0001g0060a0014c0021t0002g0157 | 2 | 297 | 0.0067 | 1 | c.125 others(5): Show |
p.Thr others(5): Show |
RENBP | ENSG00000102032.13 | transcript | ENST00000393700.8 | protein_coding | 11/11 | 1290/1334 | 1257/1284 | 419/427 | chrX | TogoVar | ||
RENBP_chrX_153930269_153949643 | 153935318 | C | CG | frameshift_variant | HIGH | HG02258.hp1 HG03831.hp1 NA18941.hp2 others(3): Show |
a0000 | a0000c0007 | a0000c0007t0001 | a0000c0007t0001g0061a0000c0007t0001g0118a0000c0007t0001g0120others(3): Show | 6 | 297 | 0.0202 | 1 | c.125 others(5): Show |
p.Ala others(5): Show |
RENBP | ENSG00000102032.13 | transcript | ENST00000393700.8 | protein_coding | 11/11 | 1284/1334 | 1251/1284 | 417/427 | chrX | TogoVar | ||
RFX8_chr2_101392359_101480112 | 101422474 | T | G | splice_acceptor_variant others(1): Show |
HIGH | HG00408.hp2 HG00544.hp2 HG00558.hp1 others(42): Show |
a0001a0002a0004others(4): Show | a0001c0001a0002c0002a0004c0004others(4): Show | a0001c0001t0001a0001c0001t0002a0002c0002t0001others(7): Show | a0001c0001t0001g0002a0001c0001t0001g0013a0001c0001t0001g0109others(36): Show | 45 | 352 | 0.1278 | 0 | c.73- others(4): Show |
RFX8 | ENSG00000196460.14 | transcript | ENST00000428343.6 | protein_coding | 2/11 | chr2 | TogoVar | ||||||
RP1L1_chr8_10601349_10660143 | 10622785 | T | TG | frameshift_variant | HIGH | HG02074.hp1 NA18941.hp2 NA18954.hp2 others(7): Show |
a0008 | a0008c0138a0008c0139a0008c0140others(7): Show | a0008c0138t0003a0008c0139t0002a0008c0140t0002others(7): Show | a0008c0138t0003g0346a0008c0139t0002g0116a0008c0140t0002g0044others(7): Show | 10 | 414 | 0.0242 | 1 | c.416 others(4): Show |
p.Gly others(5): Show |
RP1L1 | ENSG00000183638.6 | transcript | ENST00000382483.4 | protein_coding | 2/4 | 681/8014 | 416/7203 | 139/2400 | chr8 | TogoVar | ||
RXFP2_chr13_31734526_31808389 | 31786554 | T | TAA | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp2 HG00280.hp1 HG00639.hp2 others(99): Show |
a0001a0002a0003others(2): Show | a0001c0001a0002c0012a0003c0005others(2): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(5): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0006others(97): Show | 102 | 386 | 0.2643 | 2 | c.100 others(15): Show |
RXFP2 | ENSG00000133105.8 | transcript | ENST00000298386.7 | protein_coding | 12/17 | INFO_REALIGN_3_PRIME | chr13 | TogoVar | |||||
SDR39U1_chr14_24434766_24447776 | 24440157 | G | A | stop_gained | HIGH | NA18941.hp2 NA18955.hp1 NA18983.hp2 |
a0004 | a0004c0006 | a0004c0006t0001 | a0004c0006t0001g0010 | 3 | 462 | 0.0065 | 0 | c.808 others(3): Show |
p.Gln others(4): Show |
SDR39U1 | ENSG00000100445.18 | transcript | ENST00000399395.8 | protein_coding | 6/6 | 815/1206 | 808/882 | 270/293 | chr14 | TogoVar | ||
SERINC4_chr15_43789162_43805220 | 43797216 | A | AAG | frameshift_variant | HIGH | HG00423.hp2 HG02083.hp2 NA18941.hp2 others(11): Show |
a0002 | a0002c0002a0002c0003 | a0002c0002t0001a0002c0002t0006a0002c0003t0001 | a0002c0002t0001g0009a0002c0002t0006g0022a0002c0003t0001g0020others(2): Show | 14 | 382 | 0.0367 | 2 | c.772 others(9): Show |
p.Met others(5): Show |
SERINC4 | ENSG00000184716.14 | transcript | ENST00000319327.7 | protein_coding | 6/12 | 1006/2629 | 772/1557 | 258/518 | chr15 | TogoVar | ||
SLC22A14_chr3_38277294_38323575 | 38307252 | A | C | splice_acceptor_variant others(1): Show |
HIGH | HG00609.hp1 HG00621.hp1 HG00735.hp2 others(42): Show |
a0001a0002a0003others(1): Show | a0001c0001a0002c0002a0003c0003others(1): Show | a0001c0001t0001a0001c0001t0002a0002c0002t0001others(2): Show | a0001c0001t0001g0019a0001c0001t0001g0024a0001c0001t0001g0199others(35): Show | 45 | 406 | 0.1108 | 0 | c.517 others(5): Show |
SLC22A14 | ENSG00000144671.11 | transcript | ENST00000448498.6 | protein_coding | 2/10 | chr3 | TogoVar | ||||||
SLC22A24_chr11_63074940_63149221 | 63081015 | A | C | stop_gained | HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(265): Show |
a0001a0002a0004others(8): Show | a0001c0001a0001c0017a0002c0002others(14): Show | a0001c0001t0001a0001c0017t0001a0002c0002t0001others(16): Show | a0001c0001t0001g0096a0001c0001t0001g0097a0001c0001t0001g0098others(263): Show | 268 | 366 | 0.7322 | 0 | c.150 others(4): Show |
p.Tyr others(4): Show |
SLC22A24 | ENSG00000197658.9 | transcript | ENST00000612278.4 | protein_coding | 9/10 | 1945/2101 | 1503/1659 | 501/552 | chr11 | TogoVar | ||
SLC22A24_chr11_63074940_63149221 | 63083303 | G | A | stop_gained | HIGH | HG00423.hp2 HG01074.hp2 HG02074.hp2 others(18): Show |
a0006a0015 | a0006c0006a0015c0022 | a0006c0006t0001a0015c0022t0001 | a0006c0006t0001g0269a0006c0006t0001g0311a0006c0006t0001g0316others(18): Show | 21 | 366 | 0.0574 | 0 | c.122 others(4): Show |
p.Gln others(4): Show |
SLC22A24 | ENSG00000197658.9 | transcript | ENST00000612278.4 | protein_coding | 7/10 | 1667/2101 | 1225/1659 | 409/552 | chr11 | TogoVar | ||
SLC22A24_chr11_63074940_63149221 | 63143377 | C | T | splice_donor_variant others(1): Show |
HIGH | HG00558.hp2 HG00597.hp2 HG00642.hp1 others(83): Show |
a0003a0007a0013others(2): Show | a0003c0003a0003c0009a0007c0007others(4): Show | a0003c0003t0002a0003c0003t0003a0003c0003t0005others(7): Show | a0003c0003t0002g0001a0003c0003t0002g0002a0003c0003t0002g0022others(80): Show | 86 | 366 | 0.2350 | 0 | c.402 others(5): Show |
SLC22A24 | ENSG00000197658.9 | transcript | ENST00000612278.4 | protein_coding | 1/9 | chr11 | TogoVar | ||||||
SLC25A6_chrX_1381152_1397113 | 1386698 | G | GC | frameshift_variant | HIGH | NA18941.hp2 | a0000 | a0000c0014 | a0000c0014t0001 | a0000c0014t0001g0045 | 1 | 196 | 0.0051 | 1 | c.800 others(4): Show |
p.Lys others(5): Show |
SLC25A6 | ENSG00000169100.14 | transcript | ENST00000381401.11 | protein_coding | 4/4 | 904/1451 | 800/897 | 267/298 | chrX | TogoVar | ||
SLC25A6_chrX_1381152_1397113 | 1389323 | GC | G | frameshift_variant | HIGH | NA18941.hp1 | a0007 | a0007c0013 | a0007c0013t0001 | a0007c0013t0001g0021 | 1 | 196 | 0.0051 | -1 | c.515 others(4): Show |
p.Gly others(5): Show |
SLC25A6 | ENSG00000169100.14 | transcript | ENST00000381401.11 | protein_coding | 2/4 | 619/1451 | 515/897 | 172/298 | chrX | TogoVar | ||
SLC25A6_chrX_1381152_1397113 | 1389401 | TC | T | frameshift_variant | HIGH | NA18941.hp1 | a0007 | a0007c0013 | a0007c0013t0001 | a0007c0013t0001g0021 | 1 | 196 | 0.0051 | -1 | c.437 others(4): Show |
p.Gly others(5): Show |
SLC25A6 | ENSG00000169100.14 | transcript | ENST00000381401.11 | protein_coding | 2/4 | 541/1451 | 437/897 | 146/298 | chrX | TogoVar | ||
SLC35G6_chr17_7476446_7488496 | 7482961 | G | A | stop_gained | HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(314): Show |
a0001a0002a0004others(5): Show | a0001c0001a0001c0009a0002c0002others(6): Show | a0001c0001t0001a0001c0001t0005a0001c0001t0006others(11): Show | a0001c0001t0001g0001a0001c0001t0001g0004a0001c0001t0005g0001others(13): Show | 317 | 412 | 0.7694 | 0 | c.977 others(3): Show |
p.Trp others(4): Show |
SLC35G6 | ENSG00000259224.3 | transcript | ENST00000412468.4 | protein_coding | 2/2 | 1048/1583 | 977/1017 | 326/338 | chr17 | TogoVar | ||
SLC6A8_chrX_153682926_153701588 | 153694570 | C | CG | frameshift_variant | HIGH | NA18941.hp1 | a0005 | a0005c0005 | a0005c0005t0001 | a0005c0005t0001g0007 | 1 | 290 | 0.0035 | 1 | c.153 others(5): Show |
p.Tyr others(5): Show |
SLC6A8 | ENSG00000130821.17 | transcript | ENST00000253122.10 | protein_coding | 11/13 | 2186/3931 | 1537/1908 | 513/635 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SMAD5_chr5_136127845_136187733 | 136147819 | A | AT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(137): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0003a0001c0001t0005others(18): Show | a0001c0001t0002g0007a0001c0001t0002g0008a0001c0001t0002g0009others(108): Show | 140 | 294 | 0.4762 | 1 | c.-24 others(7): Show |
SMAD5 | ENSG00000113658.18 | transcript | ENST00000545279.6 | protein_coding | 1/7 | INFO_REALIGN_3_PRIME | chr5 | TogoVar | |||||
SNX27_chr1_151607050_151704080 | 151692406 | C | CT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp2 HG00280.hp1 HG00408.hp1 others(82): Show |
a0001a0002 | a0001c0001a0001c0006a0001c0007others(1): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(48): Show | a0001c0001t0001g0113a0001c0001t0001g0117a0001c0001t0001g0118others(82): Show | 85 | 366 | 0.2322 | 1 | c.124 others(7): Show |
SNX27 | ENSG00000143376.14 | transcript | ENST00000458013.7 | protein_coding | 8/11 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
SON_chr21_33538038_33582481 | 33576378 | G | GA | frameshift_variant | HIGH | HG00280.hp1 HG00280.hp2 HG00323.hp1 others(360): Show |
a0001a0002a0003others(24): Show | a0001c0001a0001c0002a0001c0009others(50): Show | a0001c0001t0001a0001c0001t0003a0001c0002t0001others(52): Show | a0001c0001t0001g0001a0001c0001t0001g0003a0001c0001t0001g0005others(246): Show | 363 | 364 | 0.9973 | 1 | c.723 others(5): Show |
p.Ala others(6): Show |
SON | ENSG00000159140.23 | transcript | ENST00000356577.10 | protein_coding | 12/12 | 7292/8393 | 7237/7281 | 2413/2426 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | |
SON_chr21_33538038_33582481 | 33576390 | GA | G | frameshift_variant | HIGH | HG00280.hp1 HG00280.hp2 HG00323.hp1 others(360): Show |
a0001a0002a0003others(24): Show | a0001c0001a0001c0002a0001c0009others(50): Show | a0001c0001t0001a0001c0001t0003a0001c0002t0001others(52): Show | a0001c0001t0001g0001a0001c0001t0001g0003a0001c0001t0001g0005others(246): Show | 363 | 364 | 0.9973 | -1 | c.724 others(5): Show |
p.Arg others(6): Show |
SON | ENSG00000159140.23 | transcript | ENST00000356577.10 | protein_coding | 12/12 | 7303/8393 | 7248/7281 | 2416/2426 | chr21 | TogoVar | ||
SPACA9_chr9_132873898_132895030 | 132883699 | GAGGTCAG others(1037): Show |
G | exon_loss_variant others(1): Show |
HIGH | NA18941.hp1 | a0003 | a0003c0010 | a0003c0010t0019 | a0003c0010t0019g0098 | 1 | 430 | 0.0023 | -1044 | c.-37 others(15): Show |
SPACA9 | ENSG00000165698.16 | transcript | ENST00000356311.10 | protein_coding | 2/4 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
SPATA31D4_chr9_81923428_81939998 | 81930201 | CTTTTTTT others(9790): Show |
C | exon_loss_variant others(5): Show |
HIGH | HG02602.hp2 NA18941.hp2 NA18964.hp2 others(2): Show |
a0000 | a0000c0003 | a0000c0003t0003 | a0000c0003t0003g0017 | 5 | 360 | 0.0139 | -9797 | c.293 others(12): Show |
SPATA31D4 | ENSG00000189357.9 | transcript | ENST00000419782.5 | protein_coding | 4/4 | chr9 | TogoVar | ||||||
SPDYE21_chr7_67271941_67294005 | 67281505 | T | TGGGTGGC | frameshift_variant | HIGH | HG00408.hp1 HG00438.hp1 HG00558.hp1 others(128): Show |
a0002a0009a0012others(2): Show | a0002c0002a0002c0010a0009c0011others(3): Show | a0002c0002t0001a0002c0002t0009a0002c0002t0017others(6): Show | a0002c0002t0001g0001a0002c0002t0001g0003a0002c0002t0001g0004others(50): Show | 131 | 460 | 0.2848 | 7 | c.514 others(14): Show |
p.Glu others(5): Show |
SPDYE21 | ENSG00000230358.6 | transcript | ENST00000424157.4 | protein_coding | 4/9 | 1065/3286 | 521/1209 | 174/402 | INFO_REALIGN_3_PRIME | chr7 | TogoVar | |
SPSB2_chr12_6865935_6878303 | 6872998 | C | T | splice_acceptor_variant others(1): Show |
HIGH | HG00423.hp1 HG00544.hp2 HG00609.hp2 others(74): Show |
a0001a0002 | a0001c0001a0001c0003a0002c0002 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(3): Show | a0001c0001t0001g0006a0001c0001t0001g0007a0001c0001t0001g0016others(7): Show | 77 | 398 | 0.1935 | 0 | c.-96 others(5): Show |
SPSB2 | ENSG00000111671.10 | transcript | ENST00000524270.6 | protein_coding | 1/2 | chr12 | TogoVar | ||||||
SRPK3_chrX_153776041_153790730 | 153783234 | GC | G | frameshift_variant | HIGH | NA18941.hp1 NA18941.hp2 |
a0014a0015 | a0014c0016a0015c0017 | a0014c0016t0001a0015c0017t0005 | a0014c0016t0001g0025a0015c0017t0005g0027 | 2 | 307 | 0.0065 | -1 | c.763 others(4): Show |
p.Gln others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 8/15 | 809/1960 | 763/1704 | 255/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153783755 | AC | A | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | -1 | c.780 others(4): Show |
p.Gly others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 9/15 | 826/1960 | 780/1704 | 260/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153783876 | AG | A | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | -1 | c.901 others(4): Show |
p.Ala others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 9/15 | 947/1960 | 901/1704 | 301/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153783993 | CG | C | frameshift_variant | HIGH | NA18941.hp2 NA19058.hp1 |
a0006a0015 | a0006c0011a0015c0017 | a0006c0011t0008a0015c0017t0005 | a0006c0011t0008g0019a0015c0017t0005g0027 | 2 | 307 | 0.0065 | -1 | c.932 others(4): Show |
p.Gly others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 10/15 | 978/1960 | 932/1704 | 311/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153784137 | CT | C | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | -1 | c.107 others(5): Show |
p.Phe others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 10/15 | 1119/1960 | 1073/1704 | 358/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153784349 | TA | T | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | -1 | c.120 others(5): Show |
p.Lys others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 11/15 | 1251/1960 | 1205/1704 | 402/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153784375 | TG | T | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | -1 | c.123 others(5): Show |
p.Gly others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 11/15 | 1278/1960 | 1232/1704 | 411/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153784821 | C | CG | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | 1 | c.132 others(5): Show |
p.Ala others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 12/15 | 1369/1960 | 1323/1704 | 441/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153785117 | TC | T | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | -1 | c.146 others(5): Show |
p.Pro others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 14/15 | 1515/1960 | 1469/1704 | 490/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRPK3_chrX_153776041_153790730 | 153785508 | G | GC | frameshift_variant | HIGH | NA18941.hp2 | a0015 | a0015c0017 | a0015c0017t0005 | a0015c0017t0005g0027 | 1 | 307 | 0.0033 | 1 | c.169 others(5): Show |
p.Leu others(5): Show |
SRPK3 | ENSG00000184343.11 | transcript | ENST00000370101.8 | protein_coding | 15/15 | 1740/1960 | 1694/1704 | 565/567 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
SRSF3_chr6_36589362_36610600 | 36601940 | C | CT | splice_acceptor_variant others(1): Show |
HIGH | HG00408.hp2 HG00438.hp2 HG00544.hp2 others(95): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(15): Show | a0001c0001t0001g0021a0001c0001t0001g0045a0001c0001t0001g0051others(85): Show | 98 | 382 | 0.2565 | 1 | c.468 others(6): Show |
SRSF3 | ENSG00000112081.17 | transcript | ENST00000373715.11 | protein_coding | 5/5 | INFO_REALIGN_3_PRIME | chr6 | TogoVar | |||||
STAG2_chrX_123956706_124107656 | 124051099 | C | CT | splice_acceptor_variant others(1): Show |
HIGH | HG00280.hp1 HG01106.hp1 HG01123.hp2 others(17): Show |
a0001a0004 | a0001c0001a0001c0003a0004c0005 | a0001c0001t0001a0001c0001t0002a0001c0003t0001others(1): Show | a0001c0001t0001g0004a0001c0001t0001g0053a0001c0001t0001g0085others(17): Show | 20 | 276 | 0.0725 | 1 | c.101 others(7): Show |
STAG2 | ENSG00000101972.20 | transcript | ENST00000371145.8 | protein_coding | 11/34 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |||||
STAG2_chrX_123956706_124107656 | 124063987 | G | GAAGTCAA others(1): Show |
frameshift_variant | HIGH | NA18941.hp2 | a0004 | a0004c0005 | a0004c0005t0007 | a0004c0005t0007g0083 | 1 | 276 | 0.0036 | 8 | c.196 others(17): Show |
p.Leu others(5): Show |
STAG2 | ENSG00000101972.20 | transcript | ENST00000371145.8 | protein_coding | 20/35 | 2283/6179 | 1970/3807 | 657/1268 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |
TAAR2_chr6_132612150_132629275 | 132617703 | C | T | stop_gained | HIGH | HG00408.hp2 HG00544.hp2 HG00558.hp1 others(24): Show |
a0002 | a0002c0003a0002c0008 | a0002c0003t0000a0002c0008t0000 | a0002c0003t0000g0004a0002c0003t0000g0029a0002c0003t0000g0056others(9): Show | 27 | 452 | 0.0597 | 0 | c.503 others(3): Show |
p.Trp others(4): Show |
TAAR2 | ENSG00000146378.6 | transcript | ENST00000367931.1 | protein_coding | 2/2 | 503/1056 | 503/1056 | 168/351 | chr6 | TogoVar | ||
TAAR9_chr6_132533277_132544336 | 132538470 | A | T | stop_gained | HIGH | HG00140.hp2 HG00639.hp2 HG00735.hp1 others(71): Show |
a0002 | a0002c0002a0002c0006 | a0002c0002t0001a0002c0006t0001 | a0002c0002t0001g0000a0002c0006t0001g0000 | 74 | 430 | 0.1721 | 0 | c.181 others(3): Show |
p.Lys others(3): Show |
TAAR9 | ENSG00000237110.3 | transcript | ENST00000434551.3 | protein_coding | 1/1 | 194/1060 | 181/1047 | 61/348 | chr6 | TogoVar | ||
TAP2_chr6_32820415_32843739 | 32828908 | A | G | stop_lost | HIGH | HG00408.hp1 HG00423.hp1 HG00438.hp1 others(156): Show |
a0000 | a0000c0002a0000c0006a0000c0008others(19): Show | a0000c0002t0001a0000c0002t0003a0000c0002t0025others(28): Show | a0000c0002t0001g0001a0000c0002t0001g0037a0000c0002t0001g0040others(70): Show | 159 | 485 | 0.3278 | 0 | c.205 others(4): Show |
p.Ter others(11): Show |
TAP2 | ENSG00000204267.19 | transcript | ENST00000374897.4 | protein_coding | 12/12 | 2150/5643 | 2059/2061 | 687/686 | chr6 | TogoVar | ||
TBC1D19_chr4_26579084_26761223 | 26735441 | C | CT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(271): Show |
a0001a0002a0003others(1): Show | a0001c0001a0001c0002a0001c0003others(6): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(13): Show | a0001c0001t0001g0002a0001c0001t0001g0003a0001c0001t0001g0004others(270): Show | 274 | 310 | 0.8839 | 1 | c.108 others(7): Show |
TBC1D19 | ENSG00000109680.11 | transcript | ENST00000264866.9 | protein_coding | 15/20 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | |||||
TBKBP1_chr17_47689161_47717052 | 47709026 | G | GC | frameshift_variant | HIGH | HG00438.hp1 HG00621.hp1 HG00621.hp2 others(37): Show |
a0002a0003a0007others(6): Show | a0002c0005a0002c0011a0002c0023others(10): Show | a0002c0005t0001a0002c0005t0005a0002c0011t0001others(12): Show | a0002c0005t0001g0003a0002c0005t0001g0007a0002c0005t0001g0022others(36): Show | 40 | 386 | 0.1036 | 1 | c.129 others(5): Show |
p.Pro others(5): Show |
TBKBP1 | ENSG00000198933.11 | transcript | ENST00000578982.6 | protein_coding | 9/10 | 1367/3342 | 1299/1848 | 433/615 | INFO_REALIGN_3_PRIME | chr17 | TogoVar | |
TEX26_chr13_30927656_30980500 | 30956872 | G | A | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp1 HG00140.hp2 HG00280.hp1 others(99): Show |
a0001 | a0001c0001a0001c0005 | a0001c0001t0001a0001c0005t0001 | a0001c0001t0001g0002a0001c0001t0001g0004a0001c0001t0001g0006others(88): Show | 102 | 414 | 0.2464 | 0 | c.313 others(5): Show |
TEX26 | ENSG00000175664.10 | transcript | ENST00000380473.8 | protein_coding | 3/6 | chr13 | TogoVar |