Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	external
MAGEA4_chrX_151907889_151930170	151923880	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA19059.hp1 NA19059.hp1	a0007 a0007	a0007c0013 a0007c0013	a0007c0013t0002 a0007c0013t0002	a0007c0013t0002g0085 a0007c0013t0002g0085	1	344	0.0029	1	c.219 others(4): Show c.219dupC	p.Thr others(4): Show p.Thr74fs	MAGEA4	ENSG00000147381.12	transcript	ENST00000276344.6	protein_coding	3/3	438/1724	220/954	74/317	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA4_chrX_151907889_151930170	151924350	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19003.hp2 NA19003.hp2	a0008 a0008	a0008c0014 a0008c0014	a0008c0014t0001 a0008c0014t0001	a0008c0014t0001g0121 a0008c0014t0001g0121	1	344	0.0029	1	c.691 others(4): Show c.691dupG	p.Val others(5): Show p.Val231fs	MAGEA4	ENSG00000147381.12	transcript	ENST00000276344.6	protein_coding	3/3	910/1724	692/954	231/317	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766709	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA19088.hp1 NA19088.hp1	a0012 a0012	a0012c0016 a0012c0016	a0012c0016t0015 a0012c0016t0015	a0012c0016t0015g0038 a0012c0016t0015g0038	1	183	0.0055	1	c.941 others(8): Show c.941_942insT	p.Glu others(5): Show p.Glu314fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1108/1682	941/945	314/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766713	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA19000.hp1 NA19000.hp1	a0000 a0000	a0000c0015 a0000c0015	a0000c0015t0002 a0000c0015t0002	a0000c0015t0002g0034 a0000c0015t0002g0034	1	183	0.0055	1	c.937 others(4): Show c.937dupG	p.Glu others(5): Show p.Glu313fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1104/1682	937/945	313/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766713	TC TC	T T	frameshift_variant frameshift_variant	HIGH	HG00408.hp1 HG00408.hp1	a0000 a0000	a0000c0009 a0000c0009	a0000c0009t0017 a0000c0009t0017	a0000c0009t0017g0030 a0000c0009t0017g0030	1	183	0.0055	-1	c.937 others(4): Show c.937delG	p.Glu others(5): Show p.Glu313fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1104/1682	937/945	313/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766743	A A	AGT AGT	frameshift_variant frameshift_variant	HIGH	NA19088.hp1 NA19088.hp1	a0012 a0012	a0012c0016 a0012c0016	a0012c0016t0015 a0012c0016t0015	a0012c0016t0015g0038 a0012c0016t0015g0038	1	183	0.0055	2	c.906 others(9): Show c.906_907dupAC	p.Leu others(5): Show p.Leu303fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1074/1682	907/945	303/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766791	A A	AG AG	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	1	c.859 others(4): Show c.859dupC	p.Leu others(5): Show p.Leu287fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	1026/1682	859/945	287/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766864	C C	CG CG	frameshift_variant frameshift_variant	HIGH	HG02622.hp1 NA19088.hp1 HG02622.hp1 NA19088.hp1	a0004 a0012 a0004 a0012	a0004c0007 a0012c0016 a0004c0007 a0012c0016	a0004c0007t0013 a0012c0016t0015 a0004c0007t0013 a0012c0016t0015	a0004c0007t0013g0058 a0012c0016t0015g0038 a0004c0007t0013g0058 a0012c0016t0015g0038	2	183	0.0109	1	c.786 others(4): Show c.786dupC	p.Gly others(5): Show p.Gly263fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	953/1682	786/945	262/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766881	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA19060.hp1 NA19060.hp1	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0014 a0008c0008t0014	a0008c0008t0014g0025 a0008c0008t0014g0025	1	183	0.0055	-1	c.769 others(4): Show c.769delG	p.Glu others(5): Show p.Glu257fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	936/1682	769/945	257/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766889	G G	GT GT	frameshift_variant frameshift_variant	HIGH	NA18945.hp1 NA18945.hp1	a0014 a0014	a0014c0021 a0014c0021	a0014c0021t0016 a0014c0021t0016	a0014c0021t0016g0017 a0014c0021t0016g0017	1	183	0.0055	1	c.761 others(4): Show c.761dupA	p.Asn others(5): Show p.Asn254fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	928/1682	761/945	254/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766909	G G	GGA GGA	frameshift_variant frameshift_variant	HIGH	NA19088.hp1 NA19088.hp1	a0012 a0012	a0012c0016 a0012c0016	a0012c0016t0015 a0012c0016t0015	a0012c0016t0015g0038 a0012c0016t0015g0038	1	183	0.0055	2	c.741 others(9): Show c.741_742insTC	p.Gln others(5): Show p.Gln248fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	908/1682	741/945	247/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766924	TG TG	T T	frameshift_variant frameshift_variant	HIGH	HG03041.hp2 HG03041.hp2	a0003 a0003	a0003c0020 a0003c0020	a0003c0020t0020 a0003c0020t0020	a0003c0020t0020g0016 a0003c0020t0020g0016	1	183	0.0055	-1	c.726 others(4): Show c.726delC	p.Lys others(5): Show p.Lys243fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	893/1682	726/945	242/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766929	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA19088.hp1 NA19088.hp1	a0012 a0012	a0012c0016 a0012c0016	a0012c0016t0015 a0012c0016t0015	a0012c0016t0015g0038 a0012c0016t0015g0038	1	183	0.0055	1	c.721 others(4): Show c.721dupG	p.Asp others(5): Show p.Asp241fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	888/1682	721/945	241/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766933	CG CG	C C	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	-1	c.717 others(4): Show c.717delC	p.Phe others(5): Show p.Phe239fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	884/1682	717/945	239/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152766967	TA TA	T T	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	-1	c.683 others(4): Show c.683delT	p.Leu others(5): Show p.Leu228fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	850/1682	683/945	228/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767000	A A	AG AG	frameshift_variant frameshift_variant	HIGH	HG02622.hp1 HG02622.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0013 a0004c0007t0013	a0004c0007t0013g0058 a0004c0007t0013g0058	1	183	0.0055	1	c.650 others(4): Show c.650dupC	p.Glu others(5): Show p.Glu218fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	817/1682	650/945	217/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767000	AG AG	A A	frameshift_variant frameshift_variant	HIGH	NA19043.hp1 NA19043.hp1	a0006 a0006	a0006c0011 a0006c0011	a0006c0011t0018 a0006c0011t0018	a0006c0011t0018g0040 a0006c0011t0018g0040	1	183	0.0055	-1	c.650 others(4): Show c.650delC	p.Pro others(5): Show p.Pro217fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	817/1682	650/945	217/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767049	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA19060.hp1 NA19060.hp1	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0014 a0008c0008t0014	a0008c0008t0014g0025 a0008c0008t0014g0025	1	183	0.0055	1	c.601 others(8): Show c.601_602insC	p.Phe others(5): Show p.Phe201fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	768/1682	601/945	201/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767059	T T	TG TG	frameshift_variant frameshift_variant	HIGH	HG03041.hp2 HG03041.hp2	a0003 a0003	a0003c0020 a0003c0020	a0003c0020t0020 a0003c0020t0020	a0003c0020t0020g0016 a0003c0020t0020g0016	1	183	0.0055	1	c.591 others(4): Show c.591dupC	p.Lys others(5): Show p.Lys198fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	758/1682	591/945	197/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767102	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18945.hp1 NA18945.hp1	a0014 a0014	a0014c0021 a0014c0021	a0014c0021t0016 a0014c0021t0016	a0014c0021t0016g0017 a0014c0021t0016g0017	1	183	0.0055	1	c.548 others(4): Show c.548dupG	p.Leu others(5): Show p.Leu184fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	715/1682	548/945	183/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767106	AG AG	A A	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	-1	c.544 others(4): Show c.544delC	p.Leu others(5): Show p.Leu182fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	711/1682	544/945	182/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767110	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA18945.hp1 NA18945.hp1	a0014 a0014	a0014c0021 a0014c0021	a0014c0021t0016 a0014c0021t0016	a0014c0021t0016g0017 a0014c0021t0016g0017	1	183	0.0055	1	c.540 others(4): Show c.540dupC	p.Cys others(5): Show p.Cys181fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	707/1682	540/945	180/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767158	C C	CGATGCCA others(4): Show CGATGCCAAAGA	frameshift_variant frameshift_variant	HIGH	HG02897.hp2 HG02897.hp2	a0010 a0010	a0010c0018 a0010c0018	a0010c0018t0003 a0010c0018t0003	a0010c0018t0003g0062 a0010c0018t0003g0062	1	183	0.0055	11	c.482 others(18): Show c.482_492dupTCTTTGGCATC	p.Glu others(5): Show p.Glu165fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	659/1682	492/945	164/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767239	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA19067.hp1 NA19067.hp1	a0009 a0009	a0009c0019 a0009c0019	a0009c0019t0002 a0009c0019t0002	a0009c0019t0002g0035 a0009c0019t0002g0035	1	183	0.0055	1	c.411 others(4): Show c.411dupG	p.Ser others(5): Show p.Ser138fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	578/1682	411/945	137/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767293	GA GA	G G	frameshift_variant frameshift_variant	HIGH	HG02622.hp1 HG02622.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0013 a0004c0007t0013	a0004c0007t0013g0058 a0004c0007t0013g0058	1	183	0.0055	-1	c.357 others(4): Show c.357delT	p.Leu others(5): Show p.Leu120fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	524/1682	357/945	119/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767336	G G	GA GA	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	1	c.314 others(4): Show c.314dupT	p.Gln others(5): Show p.Gln106fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	481/1682	314/945	105/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767368	G G	GC GC	frameshift_variant frameshift_variant	HIGH	HG03041.hp2 HG03041.hp2	a0003 a0003	a0003c0020 a0003c0020	a0003c0020t0020 a0003c0020t0020	a0003c0020t0020g0016 a0003c0020t0020g0016	1	183	0.0055	1	c.282 others(4): Show c.282dupG	p.Pro others(4): Show p.Pro95fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	449/1682	282/945	94/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767373	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA18945.hp1 NA18945.hp1	a0014 a0014	a0014c0021 a0014c0021	a0014c0021t0016 a0014c0021t0016	a0014c0021t0016g0017 a0014c0021t0016g0017	1	183	0.0055	-1	c.277 others(4): Show c.277delG	p.Glu others(4): Show p.Glu93fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	444/1682	277/945	93/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767496	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA18945.hp1 NA18945.hp1	a0014 a0014	a0014c0021 a0014c0021	a0014c0021t0016 a0014c0021t0016	a0014c0021t0016g0017 a0014c0021t0016g0017	1	183	0.0055	1	c.154 others(4): Show c.154dupG	p.Glu others(4): Show p.Glu52fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	321/1682	154/945	52/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767530	AG AG	A A	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	-1	c.120 others(4): Show c.120delC	p.Ser others(4): Show p.Ser41fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	287/1682	120/945	40/314		chrX	TogoVar
MAGEA6_chrX_152761136_152774689	152767583	AG AG	A A	frameshift_variant frameshift_variant	HIGH	HG00099.hp1 HG00099.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0010 a0015c0022t0010	a0015c0022t0010g0045 a0015c0022t0010g0045	1	183	0.0055	-1	c.67d others(3): Show c.67delC	p.Leu others(4): Show p.Leu23fs	MAGEA6	ENSG00000197172.11	transcript	ENST00000329342.10	protein_coding	3/3	234/1682	67/945	23/314		chrX	TogoVar
MAGEA9B_chrX_149576653_149592459	149582456	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA19081.hp2 NA19081.hp2	a0009 a0009	a0009c0009 a0009c0009	a0009c0009t0005 a0009c0009t0005	a0009c0009t0005g0036 a0009c0009t0005g0036	1	242	0.0041	-1	c.723 others(4): Show c.723delC	p.Arg others(5): Show p.Arg242fs	MAGEA9B	ENSG00000267978.6	transcript	ENST00000595065.6	protein_coding	4/4	1010/1814	723/948	241/315		chrX	TogoVar
MAGEA9B_chrX_149576653_149592459	149582515	TC TC	T T	frameshift_variant frameshift_variant	HIGH	HG06807.hp1 NA19081.hp2 HG06807.hp1 NA19081.hp2	a0006 a0009 a0006 a0009	a0006c0010 a0009c0009 a0006c0010 a0009c0009	a0006c0010t0006 a0009c0009t0005 a0006c0010t0006 a0009c0009t0005	a0006c0010t0006g0060 a0009c0009t0005g0036 a0006c0010t0006g0060 a0009c0009t0005g0036	2	242	0.0083	-1	c.664 others(4): Show c.664delG	p.Glu others(5): Show p.Glu222fs	MAGEA9B	ENSG00000267978.6	transcript	ENST00000595065.6	protein_coding	4/4	951/1814	664/948	222/315		chrX	TogoVar
MAGEA9B_chrX_149576653_149592459	149582630	A A	AT AT	frameshift_variant frameshift_variant	HIGH	NA19081.hp2 NA19081.hp2	a0009 a0009	a0009c0009 a0009c0009	a0009c0009t0005 a0009c0009t0005	a0009c0009t0005g0036 a0009c0009t0005g0036	1	242	0.0041	1	c.549 others(8): Show c.549_550insA	p.Ser others(5): Show p.Ser184fs	MAGEA9B	ENSG00000267978.6	transcript	ENST00000595065.6	protein_coding	4/4	836/1814	549/948	183/315		chrX	TogoVar
MAGEA9B_chrX_149576653_149592459	149582868	GA GA	G G	frameshift_variant frameshift_variant	HIGH	NA19081.hp2 NA19081.hp2	a0009 a0009	a0009c0009 a0009c0009	a0009c0009t0005 a0009c0009t0005	a0009c0009t0005g0036 a0009c0009t0005g0036	1	242	0.0041	-1	c.311 others(4): Show c.311delT	p.Phe others(5): Show p.Phe104fs	MAGEA9B	ENSG00000267978.6	transcript	ENST00000595065.6	protein_coding	4/4	598/1814	311/948	104/315		chrX	TogoVar
MAGEA9B_chrX_149576653_149592459	149583004	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18968.hp1 NA18968.hp1	a0010 a0010	a0010c0006 a0010c0006	a0010c0006t0003 a0010c0006t0003	a0010c0006t0003g0038 a0010c0006t0003g0038	1	242	0.0041	-1	c.175 others(4): Show c.175delC	p.Gln others(4): Show p.Gln59fs	MAGEA9B	ENSG00000267978.6	transcript	ENST00000595065.6	protein_coding	4/4	462/1814	175/948	59/315		chrX	TogoVar
MAGEA9B_chrX_149576653_149592459	149583020	AC AC	A A	frameshift_variant frameshift_variant	HIGH	HG06807.hp1 HG06807.hp1	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0006 a0006c0010t0006	a0006c0010t0006g0060 a0006c0010t0006g0060	1	242	0.0041	-1	c.159 others(4): Show c.159delG	p.Ser others(4): Show p.Ser54fs	MAGEA9B	ENSG00000267978.6	transcript	ENST00000595065.6	protein_coding	4/4	446/1814	159/948	53/315		chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786281	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	1	c.73d others(3): Show c.73dupC	p.Leu others(4): Show p.Leu25fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	361/1814	74/948	25/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786319	GA GA	G G	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	-1	c.110 others(4): Show c.110delA	p.Glu others(4): Show p.Glu37fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	397/1814	110/948	37/315		chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786378	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	1	c.170 others(4): Show c.170dupC	p.Pro others(4): Show p.Pro58fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	458/1814	171/948	57/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786440	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	-1	c.232 others(4): Show c.232delC	p.Gln others(4): Show p.Gln78fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	519/1814	232/948	78/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786489	C C	CG CG	frameshift_variant frameshift_variant	HIGH	NA19067.hp1 NA19067.hp1	a0009 a0009	a0009c0008 a0009c0008	a0009c0008t0011 a0009c0008t0011	a0009c0008t0011g0078 a0009c0008t0011g0078	1	273	0.0037	1	c.279 others(8): Show c.279_280insG	p.Ser others(4): Show p.Ser94fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	567/1814	280/948	94/315		chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786545	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	-1	c.337 others(4): Show c.337delG	p.Ala others(5): Show p.Ala113fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	624/1814	337/948	113/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786599	CA CA	C C	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	-1	c.392 others(4): Show c.392delA	p.Lys others(5): Show p.Lys131fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	679/1814	392/948	131/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786716	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19078.hp2 NA19068.hp1 NA19078.hp2	a0008 a0011 a0008 a0011	a0008c0009 a0011c0006 a0008c0009 a0011c0006	a0008c0009t0012 a0011c0006t0010 a0008c0009t0012 a0011c0006t0010	a0008c0009t0012g0040 a0011c0006t0010g0028 a0008c0009t0012g0040 a0011c0006t0010g0028	2	273	0.0073	1	c.510 others(4): Show c.510dupC	p.Ala others(5): Show p.Ala171fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	798/1814	511/948	171/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786759	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	1	c.549 others(8): Show c.549_550insA	p.Ser others(5): Show p.Ser184fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	837/1814	550/948	184/315		chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786818	TTGTCC TTGTCC	T T	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	-5	c.611 others(12): Show c.611_615delTCCTG	p.Val others(5): Show p.Val204fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	898/1814	611/948	204/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786871	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA19068.hp1 NA19068.hp1	a0011 a0011	a0011c0006 a0011c0006	a0011c0006t0010 a0011c0006t0010	a0011c0006t0010g0028 a0011c0006t0010g0028	1	273	0.0037	-1	c.664 others(4): Show c.664delG	p.Glu others(5): Show p.Glu222fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	951/1814	664/948	222/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEA9_chrX_149776930_149792737	149786980	AC AC	A A	frameshift_variant frameshift_variant	HIGH	HG01168.hp2 HG01168.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0003 a0006c0010t0003	a0006c0010t0003g0029 a0006c0010t0003g0029	1	273	0.0037	-1	c.772 others(4): Show c.772delC	p.Arg others(5): Show p.Arg258fs	MAGEA9	ENSG00000123584.7	transcript	ENST00000243314.5	protein_coding	4/4	1059/1814	772/948	258/315	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEB10_chrX_27802990_27828014	27821420	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA18941.hp1 NA18941.hp1	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0004 a0007c0009t0004	a0007c0009t0004g0157 a0007c0009t0004g0157	1	250	0.0040	-1	c.120 others(4): Show c.120delC	p.Ser others(4): Show p.Ser41fs	MAGEB10	ENSG00000177689.10	transcript	ENST00000356790.2	protein_coding	3/3	365/1953	120/1044	40/347	INFO_REALIGN_3_PRIME	chrX	TogoVar

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