Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Select column to sort.

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Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	chr	external
HCN2_chr19_584881_622159	589922	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02293.hp2 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0390 a0001c0001t0027g0390	1	408	0.0025	c.-24 others(3): Show c.-24C>T	HCN2	ENSG00000099822.3	transcript	ENST00000251287.3	protein_coding	1/8	chr19	TogoVar
HDAC10_chr22_50240183_50256265	50251225	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00408.hp2 HG00597.hp1 HG02155.hp2 others(8): Show HG00408.hp2 HG00597.hp1 HG02155.hp2 NA18939.hp1 NA18943.hp2 NA18969.hp2 NA18981.hp1 NA18995.hp1 NA18999.hp1 NA19064.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0028 a0001c0001 a0001c0028	a0001c0001t0004 a0001c0028t0004 a0001c0001t0004 a0001c0028t0004	a0001c0001t0004g0008 a0001c0001t0004g0040 a0001c0028t0004g0041 a0001c0001t0004g0008 a0001c0001t0004g0040 a0001c0028t0004g0041	11	448	0.0246	c.-19 others(4): Show c.-193G>A	HDAC10	ENSG00000100429.18	transcript	ENST00000216271.10	protein_coding	1/20	chr22	TogoVar
HDAC2_chr6_113928028_113976148	113971021	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02622.hp1 HG02630.hp2 HG02895.hp1 others(4): Show HG02622.hp1 HG02630.hp2 HG02895.hp1 HG03486.hp2 HG03579.hp1 NA18906.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0011 a0001c0001t0008g0236 a0001c0001t0008g0237 a0001c0001t0008g0011 a0001c0001t0008g0236 a0001c0001t0008g0237	7	402	0.0174	c.-11 others(4): Show c.-113A>G	HDAC2	ENSG00000196591.12	transcript	ENST00000519065.6	protein_coding	1/14	chr6	TogoVar
HDAC3_chr5_141615881_141641849	141636816	C C	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01433.hp1 HG01975.hp1 HG01981.hp2 others(3): Show HG01433.hp1 HG01975.hp1 HG01981.hp2 HG01993.hp2 HG02273.hp1 HG02293.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0026 a0001c0001t0003g0048 a0001c0001t0003g0227 a0001c0001t0003g0026 a0001c0001t0003g0048 a0001c0001t0003g0227	6	388	0.0155	c.-26 others(3): Show c.-26G>T	HDAC3	ENSG00000171720.10	transcript	ENST00000305264.8	protein_coding	1/15	chr5	TogoVar
HDGFL2_chr19_4467297_4507207	4472325	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(97): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00609.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp2 HG01099.hp1 HG01109.hp2 HG01167.hp1 HG01175.hp2 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp2 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02300.hp1 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp2 HG02717.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03490.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04228.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18955.hp2 NA18959.hp1 NA18983.hp1 NA19002.hp1 NA19005.hp1 NA19043.hp1 NA19043.hp2 NA19060.hp1 NA19062.hp2 NA19074.hp2 NA19079.hp1 NA19084.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp2 NA21309.hp1	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0008 a0011	a0001c0001 a0001c0002 a0001c0008 others(6): Show a0001c0001 a0001c0002 a0001c0008 a0001c0017 a0003c0004 a0003c0006 a0005c0007 a0008c0020 a0011c0018	a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(13): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0013 a0001c0001t0014 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0008t0003 a0001c0017t0003 a0003c0004t0005 a0003c0006t0003 a0005c0007t0003 a0008c0020t0004 a0011c0018t0005	a0001c0001t0003g0003 a0001c0001t0003g0012 a0001c0001t0003g0013 others(95): Show a0001c0001t0003g0003 a0001c0001t0003g0012 a0001c0001t0003g0013 a0001c0001t0003g0014 a0001c0001t0003g0015 a0001c0001t0003g0016 a0001c0001t0003g0024 a0001c0001t0003g0032 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0003g0037 a0001c0001t0003g0038 a0001c0001t0003g0039 a0001c0001t0003g0041 a0001c0001t0003g0042 a0001c0001t0003g0043 a0001c0001t0003g0044 a0001c0001t0003g0045 a0001c0001t0003g0046 a0001c0001t0003g0047 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0003g0050 a0001c0001t0003g0051 a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0055 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0003g0058 a0001c0001t0003g0070 a0001c0001t0003g0072 a0001c0001t0003g0073 a0001c0001t0003g0138 a0001c0001t0003g0139 a0001c0001t0003g0140 a0001c0001t0003g0141 a0001c0001t0003g0142 a0001c0001t0003g0143 a0001c0001t0003g0144 a0001c0001t0003g0145 a0001c0001t0003g0146 a0001c0001t0003g0156 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0003g0159 a0001c0001t0003g0163 a0001c0001t0003g0208 a0001c0001t0004g0040 a0001c0001t0004g0054 a0001c0001t0004g0074 a0001c0001t0004g0079 a0001c0001t0004g0155 a0001c0001t0004g0162 a0001c0001t0006g0025 a0001c0001t0006g0075 a0001c0001t0006g0076 a0001c0001t0006g0077 a0001c0001t0006g0160 a0001c0001t0006g0161 a0001c0001t0008g0080 a0001c0001t0008g0081 a0001c0001t0008g0082 a0001c0001t0008g0164 a0001c0001t0013g0078 a0001c0001t0014g0135 a0001c0002t0003g0020 a0001c0002t0003g0060 a0001c0002t0003g0147 a0001c0002t0004g0007 a0001c0002t0004g0017 a0001c0002t0004g0018 a0001c0002t0004g0019 a0001c0002t0004g0021 a0001c0002t0004g0023 a0001c0002t0004g0059 a0001c0002t0004g0061 a0001c0002t0004g0066 a0001c0002t0004g0067 a0001c0002t0004g0152 a0001c0002t0004g0154 a0001c0002t0005g0001 a0001c0002t0005g0062 a0001c0002t0005g0063 a0001c0002t0005g0064 a0001c0002t0005g0065 a0001c0002t0005g0148 a0001c0002t0005g0149 a0001c0002t0005g0153 a0001c0008t0003g0033 a0001c0008t0003g0137 a0001c0017t0003g0071 a0003c0004t0005g0150 a0003c0006t0003g0035 a0005c0007t0003g0068 a0005c0007t0003g0069 a0008c0020t0004g0022 a0011c0018t0005g0151	100	358	0.2793	c.-26 others(3): Show c.-26C>T	HDGFL2	ENSG00000167674.15	transcript	ENST00000616600.5	protein_coding	1/16	chr19	TogoVar
HDGFL3_chr15_83122753_83212823	83207702	C C	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0238 a0001c0001t0061g0238	1	246	0.0041	c.-28 others(4): Show c.-288G>T	HDGFL3	ENSG00000166503.9	transcript	ENST00000299633.7	protein_coding	1/6	chr15	TogoVar
HDHD3_chr9_113368422_113381986	113374396	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02145.hp2 HG02451.hp2 HG02922.hp1 others(1): Show HG02145.hp2 HG02451.hp2 HG02922.hp1 HG02976.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0032 a0002c0002t0008g0074 a0002c0002t0008g0032 a0002c0002t0008g0074	4	464	0.0086	c.-42 others(3): Show c.-42C>T	HDHD3	ENSG00000119431.10	transcript	ENST00000374180.4	protein_coding	3/3	chr9	TogoVar
HEATR4_chr14_73473484_73563947	73558884	A A	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00099.hp2 HG00408.hp2 HG00558.hp2 others(131): Show HG00099.hp2 HG00408.hp2 HG00558.hp2 HG00597.hp1 HG00642.hp1 HG00673.hp2 HG00738.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01123.hp2 HG01168.hp1 HG01169.hp1 HG01243.hp2 HG01261.hp1 HG01261.hp2 HG01358.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp2 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02055.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02630.hp1 HG02723.hp1 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02895.hp2 HG02897.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp2 HG03139.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG04228.hp2 NA18906.hp1 NA18941.hp1 NA18946.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp2 NA18962.hp2 NA18972.hp1 NA18973.hp2 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18982.hp2 NA18984.hp1 NA18985.hp1 NA18986.hp2 NA18997.hp2 NA18998.hp2 NA19000.hp1 NA19007.hp1 NA19011.hp1 NA19011.hp2 NA19030.hp2 NA19056.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp2 NA19067.hp1 NA19068.hp2 NA19079.hp2 NA19082.hp1 NA19082.hp2 NA19084.hp2 NA19087.hp1 NA19088.hp1 NA19090.hp2 NA19091.hp2 NA19240.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	a0001 a0006 a0007 others(6): Show a0001 a0006 a0007 a0011 a0014 a0018 a0019 a0020 a0021	a0001c0001 a0001c0002 a0001c0003 others(16): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0009 a0001c0014 a0001c0022 a0001c0029 a0001c0031 a0001c0032 a0006c0008 a0007c0015 a0011c0035 a0014c0025 a0018c0036 a0019c0037 a0020c0020 a0021c0018	a0001c0001t0001 a0001c0001t0005 a0001c0001t0009 others(21): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0009 a0001c0002t0001 a0001c0002t0008 a0001c0003t0001 a0001c0004t0005 a0001c0004t0016 a0001c0006t0001 a0001c0009t0005 a0001c0014t0001 a0001c0022t0001 a0001c0029t0001 a0001c0031t0001 a0001c0032t0005 a0006c0008t0001 a0007c0015t0001 a0007c0015t0009 a0011c0035t0005 a0014c0025t0001 a0018c0036t0010 a0019c0037t0005 a0020c0020t0005 a0021c0018t0011	a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 others(131): Show a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0005g0006 a0001c0001t0005g0008 a0001c0001t0005g0009 a0001c0001t0005g0014 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0005g0020 a0001c0001t0005g0021 a0001c0001t0005g0022 a0001c0001t0005g0023 a0001c0001t0005g0024 a0001c0001t0005g0025 a0001c0001t0005g0026 a0001c0001t0005g0028 a0001c0001t0005g0034 a0001c0001t0009g0363 a0001c0002t0001g0043 a0001c0002t0001g0054 a0001c0002t0001g0059 a0001c0002t0001g0071 a0001c0002t0001g0093 a0001c0002t0001g0101 a0001c0002t0001g0123 a0001c0002t0001g0124 a0001c0002t0001g0125 a0001c0002t0001g0126 a0001c0002t0001g0127 a0001c0002t0008g0037 a0001c0002t0008g0038 a0001c0002t0008g0068 a0001c0003t0001g0055 a0001c0003t0001g0075 a0001c0003t0001g0079 a0001c0003t0001g0097 a0001c0003t0001g0128 a0001c0004t0005g0011 a0001c0004t0005g0017 a0001c0004t0005g0035 a0001c0004t0005g0036 a0001c0004t0016g0364 a0001c0006t0001g0032 a0001c0006t0001g0049 a0001c0009t0005g0004 a0001c0009t0005g0005 a0001c0009t0005g0007 a0001c0014t0001g0080 a0001c0022t0001g0045 a0001c0029t0001g0120 a0001c0031t0001g0096 a0001c0032t0005g0003 a0006c0008t0001g0046 a0006c0008t0001g0086 a0006c0008t0001g0087 a0007c0015t0001g0027 a0007c0015t0009g0365 a0011c0035t0005g0085 a0014c0025t0001g0056 a0018c0036t0010g0029 a0019c0037t0005g0030 a0020c0020t0005g0061 a0021c0018t0011g0041	134	368	0.3641	c.-28 others(4): Show c.-285T>G	HEATR4	ENSG00000187105.9	transcript	ENST00000553558.6	protein_coding	1/18	chr14	TogoVar
HEATR5A_chr14_31286788_31425550	31420531	T T	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02486.hp1 HG02486.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0025 a0002c0002t0025	a0002c0002t0025g0349 a0002c0002t0025g0349	1	354	0.0028	c.-13 others(4): Show c.-134A>T	HEATR5A	ENSG00000129493.15	transcript	ENST00000543095.7	protein_coding	1/36	chr14	TogoVar
HEATR5A_chr14_31286788_31425550	31420540	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03130.hp1 HG03130.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0026 a0002c0002t0026	a0002c0002t0026g0350 a0002c0002t0026g0350	1	354	0.0028	c.-14 others(4): Show c.-143A>G	HEATR5A	ENSG00000129493.15	transcript	ENST00000543095.7	protein_coding	1/36	chr14	TogoVar
HEATR5A_chr14_31286788_31425550	31420545	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02145.hp2 HG02486.hp2 HG03195.hp1 others(1): Show HG02145.hp2 HG02486.hp2 HG03195.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0351 a0001c0001t0009g0352 a0001c0001t0009g0353 others(1): Show a0001c0001t0009g0351 a0001c0001t0009g0352 a0001c0001t0009g0353 a0001c0001t0009g0354	4	354	0.0113	c.-14 others(4): Show c.-148C>G	HEATR5A	ENSG00000129493.15	transcript	ENST00000543095.7	protein_coding	1/36	chr14	TogoVar
HEATR5B_chr2_36975895_37089372	37083419	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0009 a0001c0005t0009	a0001c0005t0009g0303 a0001c0005t0009g0303	1	314	0.0032	c.-5C others(2): Show c.-5C>G	HEATR5B	ENSG00000008869.12	transcript	ENST00000233099.6	protein_coding	2/36	chr2	TogoVar
HEATR5B_chr2_36975895_37089372	37084316	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA19000.hp2 NA19000.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0311 a0001c0002t0011g0311	1	314	0.0032	c.-70 others(3): Show c.-70C>T	HEATR5B	ENSG00000008869.12	transcript	ENST00000233099.6	protein_coding	1/36	chr2	TogoVar
HEATR5B_chr2_36975895_37089372	37084350	C C	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01070.hp1 HG01071.hp2 HG01515.hp2 others(7): Show HG01070.hp1 HG01071.hp2 HG01515.hp2 HG03139.hp1 HG03195.hp1 HG04204.hp2 NA18906.hp1 NA19043.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0008 a0002c0003 a0002c0031 others(1): Show a0001c0008 a0002c0003 a0002c0031 a0009c0025	a0001c0008t0003 a0002c0003t0003 a0002c0031t0003 others(1): Show a0001c0008t0003 a0002c0003t0003 a0002c0031t0003 a0009c0025t0003	a0001c0008t0003g0010 a0002c0003t0003g0002 a0002c0003t0003g0003 others(7): Show a0001c0008t0003g0010 a0002c0003t0003g0002 a0002c0003t0003g0003 a0002c0003t0003g0005 a0002c0003t0003g0006 a0002c0003t0003g0007 a0002c0003t0003g0009 a0002c0003t0003g0011 a0002c0031t0003g0008 a0009c0025t0003g0004	10	314	0.0319	c.-10 others(4): Show c.-104G>C	HEATR5B	ENSG00000008869.12	transcript	ENST00000233099.6	protein_coding	1/36	chr2	TogoVar
HEATR5B_chr2_36975895_37089372	37084354	T T	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0312 a0001c0001t0012g0312	1	314	0.0032	c.-10 others(4): Show c.-108A>T	HEATR5B	ENSG00000008869.12	transcript	ENST00000233099.6	protein_coding	1/36	chr2	TogoVar
HECTD1_chr14_31095117_31212793	31207662	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01109.hp2 HG02818.hp1 HG01109.hp2 HG02818.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0014 a0001c0002t0013 a0001c0002t0014	a0001c0002t0013g0341 a0001c0002t0014g0342 a0001c0002t0013g0341 a0001c0002t0014g0342	2	342	0.0059	c.-66 others(4): Show c.-668C>T	HECTD1	ENSG00000092148.14	transcript	ENST00000399332.6	protein_coding	1/43	chr14	TogoVar
HELZ2_chr20_63553086_63579239	63572415	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00323.hp2 HG00323.hp2	a0080 a0080	a0080c0114 a0080c0114	a0080c0114t0108 a0080c0114t0108	a0080c0114t0108g0254 a0080c0114t0108g0254	1	390	0.0026	c.-30 others(3): Show c.-30C>T	HELZ2	ENSG00000130589.16	transcript	ENST00000467148.2	protein_coding	2/20	chr20	TogoVar
HELZ2_chr20_63553086_63579239	63572869	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0086 a0001c0001t0040g0086	1	390	0.0026	c.-48 others(4): Show c.-484G>A	HELZ2	ENSG00000130589.16	transcript	ENST00000467148.2	protein_coding	2/20	chr20	TogoVar
HENMT1_chr1_108643295_108666093	108660971	A A	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0071 a0001c0001t0003g0071	1	442	0.0023	c.-87 others(3): Show c.-87T>A	HENMT1	ENSG00000162639.16	transcript	ENST00000651461.1	protein_coding	1/8	chr1	TogoVar
HERPUD2_chr7_35627659_35700135	35694351	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0218 a0001c0001t0018g0218	1	392	0.0026	c.-21 others(3): Show c.-21C>G	HERPUD2	ENSG00000122557.11	transcript	ENST00000311350.8	protein_coding	2/9	chr7	TogoVar
HERPUD2_chr7_35627659_35700135	35695034	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0392 a0001c0001t0022g0392	1	392	0.0026	c.-53 others(4): Show c.-531C>T	HERPUD2	ENSG00000122557.11	transcript	ENST00000311350.8	protein_coding	1/9	chr7	TogoVar
HES4_chr1_993964_1005097	1000018	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00741.hp2 HG01433.hp2 NA20805.hp2 others(1): Show HG00741.hp2 HG01433.hp2 NA20805.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0005 a0001c0001t0003g0005	4	396	0.0101	c.-45 others(3): Show c.-45C>T	HES4	ENSG00000188290.11	transcript	ENST00000304952.11	protein_coding	1/4	chr1	TogoVar
HEXIM1_chr17_45143475_45157099	45148998	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00140.hp2 HG02055.hp2 HG00140.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0000 a0001c0001t0014g0000	2	442	0.0045	c.-19 others(4): Show c.-193T>C	HEXIM1	ENSG00000186834.4	transcript	ENST00000332499.4	protein_coding	1/1	chr17	TogoVar
HEY1_chr8_79759010_79772767	79767688	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0035 a0001c0001t0014g0035	1	460	0.0022	c.-25 others(3): Show c.-25C>G	HEY1	ENSG00000164683.19	transcript	ENST00000354724.8	protein_coding	1/5	chr8	TogoVar
HEY2_chr6_125744632_125766269	125749665	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01099.hp2 HG01192.hp1 HG01099.hp2 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0001 a0001c0001t0011g0001	2	400	0.0050	c.-11 others(4): Show c.-112C>T	HEY2	ENSG00000135547.9	transcript	ENST00000368364.4	protein_coding	1/5	chr6	TogoVar
HGH1_chr8_144132774_144145851	144137815	G G	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0001 a0001c0001t0011g0001	1	342	0.0029	c.-21 others(3): Show c.-21G>T	HGH1	ENSG00000235173.7	transcript	ENST00000347708.5	protein_coding	1/6	chr8	TogoVar
HHIP_chr4_144641156_144750271	144646536	T T	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0230 a0001c0001t0034g0230	1	316	0.0032	c.-14 others(4): Show c.-140T>G	HHIP	ENSG00000164161.10	transcript	ENST00000296575.8	protein_coding	1/13	chr4	TogoVar
HHLA2_chr3_108291548_108383285	108296554	A A	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01192.hp2 HG02630.hp1 HG03130.hp2 others(1): Show HG01192.hp2 HG02630.hp1 HG03130.hp2 HG03139.hp2	a0002 a0005 a0002 a0005	a0002c0003 a0005c0008 a0002c0003 a0005c0008	a0002c0003t0014 a0005c0008t0019 a0002c0003t0014 a0005c0008t0019	a0002c0003t0014g0018 a0002c0003t0014g0019 a0002c0003t0014g0020 others(1): Show a0002c0003t0014g0018 a0002c0003t0014g0019 a0002c0003t0014g0020 a0005c0008t0019g0017	4	322	0.0124	c.-15 others(4): Show c.-159A>G	HHLA2	ENSG00000114455.15	transcript	ENST00000467761.6	protein_coding	1/10	chr3	TogoVar
HIBADH_chr7_27520442_27667883	27662833	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0008 a0001c0004t0008	a0001c0004t0008g0326 a0001c0004t0008g0326	1	326	0.0031	c.-45 others(3): Show c.-45C>G	HIBADH	ENSG00000106049.9	transcript	ENST00000265395.7	protein_coding	1/8	chr7	TogoVar
HIBCH_chr2_190198920_190324826	190319779	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0357 a0001c0001t0021g0357	1	368	0.0027	c.-29 others(3): Show c.-29C>T	HIBCH	ENSG00000198130.16	transcript	ENST00000359678.10	protein_coding	1/14	chr2	TogoVar
HIBCH_chr2_190198920_190324826	190319794	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01069.hp2 HG01069.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0014 a0003c0003t0014	a0003c0003t0014g0178 a0003c0003t0014g0178	1	368	0.0027	c.-44 others(3): Show c.-44C>T	HIBCH	ENSG00000198130.16	transcript	ENST00000359678.10	protein_coding	1/14	chr2	TogoVar
HIGD1A_chr3_42777908_42809490	42804467	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01243.hp1 NA18522.hp2 HG01243.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0048 a0001c0001t0013g0048	2	400	0.0050	c.-54 others(3): Show c.-54C>T	HIGD1A	ENSG00000181061.14	transcript	ENST00000321331.12	protein_coding	1/4	chr3	TogoVar
HIGD1B_chr17_44842883_44855476	44847932	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02922.hp2 HG03041.hp1 HG03130.hp1 others(1): Show HG02922.hp2 HG03041.hp1 HG03130.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0003	4	416	0.0096	c.-22 others(4): Show c.-221C>T	HIGD1B	ENSG00000131097.7	transcript	ENST00000253410.3	protein_coding	1/3	chr17	TogoVar
HIGD1C_chr12_50947544_50975607	50952640	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00673.hp2 HG00673.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0109 a0001c0002t0005g0109	1	380	0.0026	c.-13 others(4): Show c.-139C>T	HIGD1C	ENSG00000214511.4	transcript	ENST00000695931.1	protein_coding	1/5	chr12	TogoVar
HIGD1C_chr12_50947544_50975607	50952710	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02717.hp2 HG03041.hp1 HG03516.hp2 others(1): Show HG02717.hp2 HG03041.hp1 HG03516.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0057 a0001c0001t0004g0058 a0001c0001t0004g0059 others(1): Show a0001c0001t0004g0057 a0001c0001t0004g0058 a0001c0001t0004g0059 a0001c0001t0004g0060	4	380	0.0105	c.-69 others(3): Show c.-69C>T	HIGD1C	ENSG00000214511.4	transcript	ENST00000695931.1	protein_coding	1/5	chr12	TogoVar
HINT3_chr6_125951770_125985244	125956930	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01256.hp1 HG01258.hp2 HG01256.hp1 HG01258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0003 a0001c0001t0010g0023 a0001c0001t0010g0003 a0001c0001t0010g0023	2	268	0.0075	c.-48 others(3): Show c.-48C>T	HINT3	ENSG00000111911.7	transcript	ENST00000229633.7	protein_coding	1/5	chr6	TogoVar
HIPK3_chr11_33252381_33362023	33257482	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0224 a0001c0001t0025g0224	1	342	0.0029	c.-41 others(4): Show c.-410C>T	HIPK3	ENSG00000110422.12	transcript	ENST00000303296.9	protein_coding	1/17	chr11	TogoVar
HIVEP1_chr6_12007312_12169999	12012562	A A	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00642.hp1 HG00642.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0226 a0002c0002t0008g0226	1	344	0.0029	c.-10 others(4): Show c.-108A>T	HIVEP1	ENSG00000095951.17	transcript	ENST00000379388.7	protein_coding	1/9	chr6	TogoVar
HIVEP3_chr1_41501365_41923922	41584842	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02622.hp2 HG02622.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0056 a0002c0002t0056	a0002c0002t0056g0134 a0002c0002t0056g0134	1	134	0.0075	c.-45 others(3): Show c.-45C>T	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	4/9	chr1	TogoVar
HJV_chr1_146012470_146026735	146020254	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18963.hp1 NA18963.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0026 a0001c0001t0005g0026	1	382	0.0026	c.-23 others(3): Show c.-23C>T	HJV	ENSG00000168509.20	transcript	ENST00000336751.11	protein_coding	2/4	chr1	TogoVar
HK2_chr2_74829127_74898359	74834331	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0050 a0003c0003t0050	a0003c0003t0050g0302 a0003c0003t0050g0302	1	394	0.0025	c.-25 others(4): Show c.-250C>T	HK2	ENSG00000159399.10	transcript	ENST00000290573.7	protein_coding	1/18	chr2	TogoVar
HLA-DOB_chr6_32807763_32822002	32816976	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00099.hp1 HG00408.hp1 HG00423.hp1 others(137): Show HG00099.hp1 HG00408.hp1 HG00423.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00621.hp1 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00738.hp2 HG01081.hp2 HG01106.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp1 HG01943.hp1 HG01975.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02015.hp1 HG02027.hp2 HG02040.hp1 HG02055.hp2 HG02071.hp1 HG02074.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp2 HG02135.hp2 HG02155.hp2 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp2 HG02451.hp2 HG02523.hp2 HG02602.hp1 HG02602.hp2 HG02647.hp1 HG02683.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02895.hp2 HG02896.hp2 HG02897.hp2 HG03130.hp2 HG03139.hp1 HG03239.hp2 HG03453.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 NA18906.hp1 NA18941.hp2 NA18943.hp1 NA18943.hp2 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18954.hp2 NA18961.hp2 NA18962.hp2 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18973.hp1 NA18975.hp1 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18980.hp2 NA18981.hp2 NA18983.hp1 NA18987.hp2 NA18988.hp1 NA18989.hp2 NA18993.hp2 NA18994.hp2 NA18995.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19003.hp1 NA19006.hp2 NA19007.hp2 NA19054.hp2 NA19055.hp1 NA19058.hp2 NA19060.hp1 NA19064.hp2 NA19066.hp1 NA19072.hp2 NA19077.hp1 NA19079.hp2 NA19080.hp2 NA19081.hp1 NA19083.hp1 NA19084.hp1 NA19088.hp2 NA19089.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp2 NA20905.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0005 a0005c0009 a0001c0001 a0001c0005 a0005c0009	a0001c0001t0002 a0001c0001t0009 a0001c0005t0002 others(1): Show a0001c0001t0002 a0001c0001t0009 a0001c0005t0002 a0005c0009t0002	a0001c0001t0002g0002 a0001c0001t0002g0012 a0001c0001t0002g0014 others(9): Show a0001c0001t0002g0002 a0001c0001t0002g0012 a0001c0001t0002g0014 a0001c0001t0002g0018 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0039 a0001c0001t0009g0040 a0001c0005t0002g0007 a0001c0005t0002g0041 a0001c0005t0002g0042 a0005c0009t0002g0015	140	459	0.3050	c.-25 others(3): Show c.-25A>G	HLA-DOB	ENSG00000241106.8	transcript	ENST00000438763.7	protein_coding	1/6	chr6	TogoVar
HLA-DQA1_chr6_32632406_32648684	32637412	A A	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0005 a0006c0007t0005	a0006c0007t0005g0025 a0006c0007t0005g0025	1	86	0.0116	c.-47 others(3): Show c.-47A>G	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding	1/5	chr6	TogoVar
HLA-DQA2_chr6_32736391_32752198	32741402	A A	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00140.hp2 HG00408.hp1 HG00558.hp1 others(43): Show HG00140.hp2 HG00408.hp1 HG00558.hp1 HG00609.hp2 HG00642.hp2 HG00733.hp1 HG00735.hp1 HG01069.hp1 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01256.hp2 HG01257.hp1 HG01261.hp1 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp2 HG01993.hp1 HG02015.hp2 HG02055.hp2 HG02080.hp1 HG02109.hp2 HG02148.hp2 HG02572.hp2 HG02647.hp2 HG02735.hp1 HG02738.hp2 HG02970.hp2 HG03130.hp2 HG03471.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03710.hp2 HG03927.hp2 HG04199.hp1 NA18955.hp1 NA20752.hp1 NA20752.hp2	a0001 a0003 a0001 a0003	a0001c0004 a0001c0010 a0003c0005 a0001c0004 a0001c0010 a0003c0005	a0001c0004t0010 a0001c0004t0011 a0001c0010t0011 others(2): Show a0001c0004t0010 a0001c0004t0011 a0001c0010t0011 a0003c0005t0009 a0003c0005t0016	a0001c0004t0010g0011 a0001c0004t0010g0048 a0001c0004t0010g0049 others(9): Show a0001c0004t0010g0011 a0001c0004t0010g0048 a0001c0004t0010g0049 a0001c0004t0011g0011 a0001c0004t0011g0015 a0001c0010t0011g0015 a0001c0010t0011g0029 a0003c0005t0009g0016 a0003c0005t0009g0019 a0003c0005t0009g0050 a0003c0005t0016g0016 a0003c0005t0016g0019	46	455	0.1011	c.-42 others(3): Show c.-42A>G	HLA-DQA2	ENSG00000237541.4	transcript	ENST00000374940.4	protein_coding	1/5	chr6	TogoVar
HLA-DQB1_chr6_32654467_32671657	32666617	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00423.hp1 HG00673.hp1 HG02683.hp2 others(42): Show HG00423.hp1 HG00673.hp1 HG02683.hp2 HG02698.hp1 HG03017.hp1 HG03490.hp1 HG03669.hp1 HG03688.hp1 HG03831.hp2 HG04228.hp2 NA18940.hp1 NA18943.hp1 NA18947.hp1 NA18947.hp2 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18956.hp1 NA18957.hp1 NA18959.hp2 NA18962.hp2 NA18973.hp1 NA18979.hp1 NA18980.hp1 NA18982.hp1 NA18984.hp2 NA18987.hp1 NA18992.hp1 NA18998.hp1 NA19001.hp2 NA19003.hp2 NA19004.hp1 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19058.hp1 NA19064.hp1 NA19070.hp1 NA19074.hp1 NA19078.hp1 NA19081.hp1 NA19084.hp1 NA19085.hp1 NA20905.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0001 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0001 a0003c0003t0003g0047 a0003c0003t0003g0048	45	402	0.1119	c.-10 others(3): Show c.-10C>T	HLA-DQB1	ENSG00000179344.17	transcript	ENST00000434651.7	protein_coding	1/5	chr6	TogoVar
HLA-DQB1_chr6_32654467_32671657	32666649	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00140.hp1 HG00408.hp1 HG00438.hp1 others(65): Show HG00140.hp1 HG00408.hp1 HG00438.hp1 HG00735.hp1 HG01109.hp1 HG01175.hp2 HG01256.hp1 HG01257.hp1 HG01258.hp2 HG01346.hp1 HG01496.hp1 HG01884.hp1 HG01891.hp1 HG01993.hp1 HG02015.hp1 HG02040.hp1 HG02074.hp1 HG02129.hp1 HG02257.hp1 HG02258.hp2 HG02280.hp1 HG02523.hp1 HG02602.hp1 HG02615.hp1 HG02683.hp1 HG02895.hp1 HG02970.hp1 HG03195.hp1 HG03225.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03654.hp1 HG03831.hp1 HG03927.hp1 HG04115.hp1 HG04199.hp1 NA18747.hp2 NA18906.hp1 NA18941.hp1 NA18946.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18955.hp2 NA18962.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18975.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18994.hp1 NA19000.hp1 NA19001.hp1 NA19002.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19060.hp1 NA19077.hp1 NA19078.hp2 NA19240.hp1 NA20300.hp1 NA20752.hp1	a0005 a0011 a0013 a0005 a0011 a0013	a0005c0006 a0005c0019 a0011c0011 others(1): Show a0005c0006 a0005c0019 a0011c0011 a0013c0013	a0005c0006t0004 a0005c0019t0004 a0011c0011t0009 others(1): Show a0005c0006t0004 a0005c0019t0004 a0011c0011t0009 a0013c0013t0011	a0005c0006t0004g0005 a0005c0006t0004g0016 a0005c0006t0004g0022 others(8): Show a0005c0006t0004g0005 a0005c0006t0004g0016 a0005c0006t0004g0022 a0005c0006t0004g0026 a0005c0006t0004g0054 a0005c0019t0004g0056 a0011c0011t0009g0011 a0011c0011t0009g0029 a0011c0011t0009g0053 a0013c0013t0011g0013 a0013c0013t0011g0055	68	402	0.1692	c.-42 others(3): Show c.-42C>T	HLA-DQB1	ENSG00000179344.17	transcript	ENST00000434651.7	protein_coding	1/5	chr6	TogoVar
HLA-DQB2_chr6_32751098_32768532	32763481	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00099.hp1 HG00408.hp2 HG00423.hp1 others(276): Show HG00099.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00597.hp1 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01192.hp1 HG01192.hp2 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp2 HG01261.hp1 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp2 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG02004.hp2 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp2 HG02451.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp2 HG03704.hp2 HG03710.hp2 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18941.hp1 NA18943.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp2 NA18954.hp1 NA18961.hp1 NA18961.hp2 NA18962.hp2 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp2 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19003.hp2 NA19004.hp2 NA19005.hp1 NA19007.hp1 NA19007.hp2 NA19009.hp2 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19056.hp1 NA19058.hp1 NA19058.hp2 NA19059.hp2 NA19060.hp1 NA19060.hp2 NA19062.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp2 NA19075.hp1 NA19075.hp2 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19082.hp2 NA19083.hp2 NA19084.hp2 NA19086.hp1 NA19087.hp2 NA19088.hp2 NA19090.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20752.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(2): Show a0001 a0003 a0004 a0006 a0007	a0001c0001 a0003c0008 a0004c0005 others(2): Show a0001c0001 a0003c0008 a0004c0005 a0006c0009 a0007c0010	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(7): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0003c0008t0007 a0004c0005t0003 a0006c0009t0001 a0007c0010t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 others(47): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0003g0015 a0001c0001t0003g0017 a0001c0001t0003g0019 a0001c0001t0003g0020 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0054 a0001c0001t0003g0058 a0001c0001t0005g0006 a0001c0001t0006g0016 a0001c0001t0008g0055 a0001c0001t0008g0056 a0001c0001t0010g0048 a0003c0008t0007g0069 a0003c0008t0007g0070 a0004c0005t0003g0021 a0006c0009t0001g0034 a0007c0010t0001g0049	279	455	0.6132	c.-11 others(3): Show c.-11C>T	HLA-DQB2	ENSG00000232629.9	transcript	ENST00000437316.7	protein_coding	1/6	chr6	TogoVar
HLA-DRB1_chr6_32573775_32594848	32589775	A A	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(133): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00733.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02055.hp2 HG02071.hp1 HG02071.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02486.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02698.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp2 HG03017.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp2 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18955.hp1 NA18968.hp2 NA18969.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp2 NA18984.hp2 NA18988.hp2 NA18989.hp2 NA18992.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp2 NA19006.hp1 NA19006.hp2 NA19009.hp2 NA19030.hp1 NA19030.hp2 NA19055.hp2 NA19056.hp1 NA19060.hp1 NA19060.hp2 NA19065.hp2 NA19074.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp2 NA19089.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA21309.hp1	a0002 a0003 a0005 others(21): Show a0002 a0003 a0005 a0006 a0007 a0011 a0012 a0013 a0014 a0015 a0017 a0018 a0019 a0021 a0022 a0023 a0024 a0025 a0027 a0028 a0029 a0030 a0031 a0032	a0002c0003 a0003c0002 a0005c0008 others(22): Show a0002c0003 a0003c0002 a0005c0008 a0005c0010 a0006c0005 a0007c0006 a0011c0012 a0012c0013 a0013c0014 a0014c0015 a0015c0016 a0017c0019 a0018c0018 a0019c0020 a0021c0023 a0022c0022 a0023c0024 a0024c0027 a0025c0026 a0027c0030 a0028c0031 a0029c0032 a0030c0035 a0031c0034 a0032c0033	a0002c0003t0002 a0003c0002t0005 a0005c0008t0006 others(23): Show a0002c0003t0002 a0003c0002t0005 a0005c0008t0006 a0005c0010t0009 a0006c0005t0002 a0007c0006t0003 a0011c0012t0003 a0012c0013t0011 a0013c0014t0013 a0014c0015t0008 a0015c0016t0010 a0015c0016t0012 a0017c0019t0003 a0018c0018t0008 a0019c0020t0010 a0021c0023t0006 a0022c0022t0012 a0023c0024t0010 a0024c0027t0006 a0025c0026t0006 a0027c0030t0011 a0028c0031t0003 a0029c0032t0003 a0030c0035t0009 a0031c0034t0006 a0032c0033t0011	a0002c0003t0002g0008 a0002c0003t0002g0020 a0002c0003t0002g0021 others(77): Show a0002c0003t0002g0008 a0002c0003t0002g0020 a0002c0003t0002g0021 a0002c0003t0002g0022 a0002c0003t0002g0023 a0002c0003t0002g0044 a0002c0003t0002g0045 a0002c0003t0002g0046 a0002c0003t0002g0047 a0002c0003t0002g0048 a0002c0003t0002g0049 a0003c0002t0005g0005 a0003c0002t0005g0010 a0003c0002t0005g0014 a0003c0002t0005g0077 a0003c0002t0005g0078 a0003c0002t0005g0079 a0005c0008t0006g0024 a0005c0008t0006g0025 a0005c0008t0006g0026 a0005c0008t0006g0054 a0005c0008t0006g0056 a0005c0008t0006g0057 a0005c0010t0009g0027 a0005c0010t0009g0061 a0005c0010t0009g0062 a0005c0010t0009g0063 a0005c0010t0009g0064 a0005c0010t0009g0065 a0005c0010t0009g0075 a0006c0005t0002g0006 a0006c0005t0002g0016 a0006c0005t0002g0034 a0006c0005t0002g0035 a0006c0005t0002g0043 a0007c0006t0003g0007 a0007c0006t0003g0018 a0007c0006t0003g0051 a0007c0006t0003g0053 a0011c0012t0003g0009 a0011c0012t0003g0076 a0012c0013t0011g0082 a0012c0013t0011g0083 a0012c0013t0011g0085 a0012c0013t0011g0086 a0012c0013t0011g0087 a0012c0013t0011g0088 a0013c0014t0013g0011 a0014c0015t0008g0028 a0014c0015t0008g0066 a0014c0015t0008g0067 a0014c0015t0008g0068 a0015c0016t0010g0080 a0015c0016t0012g0015 a0017c0019t0003g0017 a0017c0019t0003g0052 a0018c0018t0008g0039 a0018c0018t0008g0040 a0018c0018t0008g0041 a0018c0018t0008g0042 a0019c0020t0010g0030 a0019c0020t0010g0031 a0021c0023t0006g0071 a0021c0023t0006g0072 a0021c0023t0006g0073 a0022c0022t0012g0036 a0022c0022t0012g0037 a0022c0022t0012g0038 a0023c0024t0010g0029 a0023c0024t0010g0081 a0024c0027t0006g0058 a0024c0027t0006g0059 a0025c0026t0006g0069 a0025c0026t0006g0070 a0027c0030t0011g0089 a0028c0031t0003g0050 a0029c0032t0003g0074 a0030c0035t0009g0060 a0031c0034t0006g0055 a0032c0033t0011g0084	136	208	0.6539	c.-33 others(3): Show c.-33T>G	HLA-DRB1	ENSG00000196126.12	transcript	ENST00000360004.6	protein_coding	1/6	chr6	TogoVar
HLF_chr17_55259960_55330187	55265106	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18953.hp1 NA18967.hp1 NA18953.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0067 a0001c0001t0068 a0001c0001t0067 a0001c0001t0068	a0001c0001t0067g0022 a0001c0001t0068g0029 a0001c0001t0067g0022 a0001c0001t0068g0029	2	408	0.0049	c.-37 others(4): Show c.-379C>T	HLF	ENSG00000108924.14	transcript	ENST00000226067.10	protein_coding	1/4	chr17	TogoVar
HLF_chr17_55259960_55330187	55265221	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01358.hp1 HG01952.hp1 HG01358.hp1 HG01952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0321 a0001c0001t0025g0323 a0001c0001t0025g0321 a0001c0001t0025g0323	2	408	0.0049	c.-26 others(4): Show c.-264C>T	HLF	ENSG00000108924.14	transcript	ENST00000226067.10	protein_coding	1/4	chr17	TogoVar

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