Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	external
MAGED4_chrX_52179888_52197268	52186656	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.474 others(4): Show c.474dupG	p.Pro others(5): Show p.Pro159fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	584/2537	475/2226	159/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186745	AC AC	A A	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	-1	c.561 others(4): Show c.561delC	p.Ser others(5): Show p.Ser188fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	670/2537	561/2226	187/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186775	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.592 others(4): Show c.592dupC	p.Gln others(5): Show p.Gln198fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	702/2537	593/2226	198/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186798	C C	CCCTAGTA others(1): Show CCCTAGTAG	frameshift_variant frameshift_variant	HIGH	NA18982.hp1 NA18982.hp1	a0006 a0006	a0006c0018 a0006c0018	a0006c0018t0002 a0006c0018t0002	a0006c0018t0002g0016 a0006c0018t0002g0016	1	220	0.0046	8	c.614 others(15): Show c.614_621dupCTAGTAGC	p.Ala others(5): Show p.Ala208fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	731/2537	622/2226	208/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186838	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.655 others(4): Show c.655dupG	p.Glu others(5): Show p.Glu219fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	765/2537	656/2226	219/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186845	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19006.hp1 NA19006.hp1	a0010 a0010	a0010c0015 a0010c0015	a0010c0015t0001 a0010c0015t0001	a0010c0015t0001g0019 a0010c0015t0001g0019	1	220	0.0046	1	c.661 others(4): Show c.661dupG	p.Asp others(5): Show p.Asp221fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	771/2537	662/2226	221/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186938	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.756 others(4): Show c.756dupC	p.Lys others(5): Show p.Lys253fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	866/2537	757/2226	253/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52186970	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.786 others(4): Show c.786dupC	p.Thr others(5): Show p.Thr263fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	896/2537	787/2226	263/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52187041	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	-1	c.858 others(4): Show c.858delC	p.Lys others(5): Show p.Lys287fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	967/2537	858/2226	286/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52187081	C C	CG CG	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.897 others(4): Show c.897dupG	p.Trp others(5): Show p.Trp300fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	1007/2537	898/2226	300/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52187227	GA GA	G G	frameshift_variant others(1): Show frameshift_variant splice_region_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	-1	c.104 others(5): Show c.1043delA	p.Lys others(5): Show p.Lys348fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	3/13	1152/2537	1043/2226	348/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52187700	T T	TC TC	frameshift_variant frameshift_variant	HIGH	HG00735.hp1 HG00735.hp1	a0009 a0009	a0009c0014 a0009c0014	a0009c0014t0001 a0009c0014t0001	a0009c0014t0001g0002 a0009c0014t0001g0002	1	220	0.0046	1	c.110 others(5): Show c.1106dupC	p.Pro others(5): Show p.Pro370fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1216/2537	1107/2226	369/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52187757	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA18965.hp1 NA18965.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0008 a0005c0006t0008	a0005c0006t0008g0014 a0005c0006t0008g0014	1	220	0.0046	1	c.116 others(10): Show c.1160_1161insA	p.Arg others(5): Show p.Arg388fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1270/2537	1161/2226	387/741		chrX	TogoVar
MAGED4_chrX_52179888_52197268	52187812	G G	GC GC	frameshift_variant frameshift_variant	HIGH	HG00738.hp1 HG01261.hp1 HG02145.hp1 others(3): Show HG00738.hp1 HG01261.hp1 HG02145.hp1 HG02738.hp1 HG03831.hp2 NA18961.hp1	a0002 a0002	a0002c0003 a0002c0009 a0002c0010 a0002c0003 a0002c0009 a0002c0010	a0002c0003t0001 a0002c0009t0001 a0002c0010t0001 a0002c0003t0001 a0002c0009t0001 a0002c0010t0001	a0002c0003t0001g0002 a0002c0003t0001g0026 a0002c0003t0001g0041 others(2): Show a0002c0003t0001g0002 a0002c0003t0001g0026 a0002c0003t0001g0041 a0002c0009t0001g0001 a0002c0010t0001g0018	6	220	0.0273	1	c.122 others(5): Show c.1222dupC	p.Arg others(5): Show p.Arg408fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	4/13	1332/2537	1223/2226	408/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52191444	A A	AC AC	frameshift_variant frameshift_variant	HIGH	HG00738.hp1 HG00738.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0001 a0002c0010t0001	a0002c0010t0001g0018 a0002c0010t0001g0018	1	220	0.0046	1	c.180 others(5): Show c.1804dupC	p.Arg others(5): Show p.Arg602fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	1914/2537	1805/2226	602/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52191444	AC AC	A A	frameshift_variant frameshift_variant	HIGH	NA18982.hp1 NA19076.hp1 NA18982.hp1 NA19076.hp1	a0006 a0008 a0006 a0008	a0006c0018 a0008c0013 a0006c0018 a0008c0013	a0006c0018t0002 a0008c0013t0001 a0006c0018t0002 a0008c0013t0001	a0006c0018t0002g0016 a0008c0013t0001g0051 a0006c0018t0002g0016 a0008c0013t0001g0051	2	220	0.0091	-1	c.180 others(5): Show c.1804delC	p.Arg others(5): Show p.Arg602fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	1913/2537	1804/2226	602/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52191559	CG CG	C C	frameshift_variant frameshift_variant	HIGH	HG00738.hp1 HG00738.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0001 a0002c0010t0001	a0002c0010t0001g0018 a0002c0010t0001g0018	1	220	0.0046	-1	c.191 others(5): Show c.1918delG	p.Asp others(5): Show p.Asp640fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2027/2537	1918/2226	640/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52191669	CT CT	C C	frameshift_variant frameshift_variant	HIGH	HG00738.hp1 HG00738.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0001 a0002c0010t0001	a0002c0010t0001g0018 a0002c0010t0001g0018	1	220	0.0046	-1	c.202 others(5): Show c.2027delT	p.Phe others(5): Show p.Phe676fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2136/2537	2027/2226	676/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGED4_chrX_52179888_52197268	52191742	C C	CG CG	frameshift_variant frameshift_variant	HIGH	NA18982.hp1 NA18982.hp1	a0006 a0006	a0006c0018 a0006c0018	a0006c0018t0002 a0006c0018t0002	a0006c0018t0002g0016 a0006c0018t0002g0016	1	220	0.0046	1	c.209 others(5): Show c.2098dupG	p.Val others(5): Show p.Val700fs	MAGED4	ENSG00000154545.17	transcript	ENST00000471932.6	protein_coding	12/13	2208/2537	2099/2226	700/741	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428084	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.157 others(4): Show c.157dupC	p.Gln others(4): Show p.Gln53fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	379/3633	158/2874	53/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428115	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.188 others(4): Show c.188dupG	p.Ser others(4): Show p.Ser65fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	410/3633	189/2874	63/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428132	GT GT	G G	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.204 others(4): Show c.204delT	p.Leu others(4): Show p.Leu69fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	425/3633	204/2874	68/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428727	A A	AG AG	frameshift_variant frameshift_variant	HIGH	HG02602.hp1 HG02602.hp1	a0014 a0014	a0014c0014 a0014c0014	a0014c0014t0001 a0014c0014t0001	a0014c0014t0001g0000 a0014c0014t0001g0000	1	292	0.0034	1	c.800 others(4): Show c.800dupG	p.Pro others(5): Show p.Pro268fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1022/3633	801/2874	267/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428749	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.822 others(4): Show c.822delC	p.Ala others(5): Show p.Ala275fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1043/3633	822/2874	274/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428794	CG CG	C C	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.866 others(4): Show c.866delG	p.Gly others(5): Show p.Gly289fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1087/3633	866/2874	289/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428862	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.932 others(8): Show c.932_933insA	p.Ala others(5): Show p.Ala312fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1154/3633	933/2874	311/957		chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428871	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.944 others(4): Show c.944dupG	p.Ser others(5): Show p.Ser316fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1166/3633	945/2874	315/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428898	C C	CCTGA CCTGA	frameshift_variant others(1): Show frameshift_variant stop_gained	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	4	c.969 others(11): Show c.969_970insTGAC	p.Pro others(5): Show p.Pro324fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1191/3633	970/2874	324/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428905	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA18985.hp1 NA18985.hp1	a0013 a0013	a0013c0012 a0013c0012	a0013c0012t0001 a0013c0012t0001	a0013c0012t0001g0000 a0013c0012t0001g0000	1	292	0.0034	1	c.980 others(4): Show c.980dupG	p.Leu others(5): Show p.Leu328fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1202/3633	981/2874	327/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76428934	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.100 others(10): Show c.1004_1005insA	p.Ala others(5): Show p.Ala336fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1226/3633	1005/2874	335/957		chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429105	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.117 others(5): Show c.1176dupG	p.Gln others(5): Show p.Gln393fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1398/3633	1177/2874	393/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429129	CG CG	C C	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.120 others(5): Show c.1202delG	p.Gly others(5): Show p.Gly401fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1423/3633	1202/2874	401/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429150	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.122 others(5): Show c.1223dupC	p.Gly others(5): Show p.Gly409fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1445/3633	1224/2874	408/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429243	TA TA	T T	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.131 others(5): Show c.1315delA	p.Thr others(5): Show p.Thr439fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1536/3633	1315/2874	439/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429341	AT AT	A A	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.141 others(5): Show c.1413delT	p.Ser others(5): Show p.Ser472fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1634/3633	1413/2874	471/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429351	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.142 others(5): Show c.1424delG	p.Gly others(5): Show p.Gly475fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1645/3633	1424/2874	475/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429365	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.143 others(5): Show c.1438delC	p.Arg others(5): Show p.Arg480fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1659/3633	1438/2874	480/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429625	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.169 others(5): Show c.1697dupC	p.Val others(5): Show p.Val567fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1919/3633	1698/2874	566/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429661	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.173 others(5): Show c.1734delG	p.Pro others(5): Show p.Pro579fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	1955/3633	1734/2874	578/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76429876	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.194 others(5): Show c.1948delG	p.Glu others(5): Show p.Glu650fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	2169/3633	1948/2874	650/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76430206	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	-1	c.227 others(5): Show c.2278delG	p.Asp others(5): Show p.Asp760fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	2499/3633	2278/2874	760/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76430614	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.268 others(5): Show c.2685dupG	p.Gln others(5): Show p.Gln896fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	2907/3633	2686/2874	896/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76430647	G G	GT GT	frameshift_variant frameshift_variant	HIGH	NA18997.hp1 NA18997.hp1	a0007 a0007	a0007c0020 a0007c0020	a0007c0020t0006 a0007c0020t0006	a0007c0020t0006g0000 a0007c0020t0006g0000	1	292	0.0034	1	c.272 others(5): Show c.2720dupT	p.Leu others(5): Show p.Leu907fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	2942/3633	2721/2874	907/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE1_chrX_76422710_76436342	76430698	GA GA	G G	frameshift_variant frameshift_variant	HIGH	NA18976.hp1 NA18976.hp1	a0000 a0000	a0000c0008 a0000c0008	a0000c0008t0003 a0000c0008t0003	a0000c0008t0003g0000 a0000c0008t0003g0000	1	292	0.0034	-1	c.277 others(5): Show c.2771delA	p.Lys others(5): Show p.Lys924fs	MAGEE1	ENSG00000198934.5	transcript	ENST00000361470.4	protein_coding	1/1	2992/3633	2771/2874	924/957	INFO_REALIGN_3_PRIME	chrX	TogoVar
MAGEE2_chrX_75777987_75790254	75783734	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19076.hp1 NA19076.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0002 a0007c0005t0002	a0007c0005t0002g0000 a0007c0005t0002g0000	1	277	0.0036	1	c.131 others(5): Show c.1317dupC	p.Ile others(5): Show p.Ile440fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	1520/2268	1317/1572	439/523		chrX	TogoVar
MAGEE2_chrX_75777987_75790254	75784260	CA CA	C C	frameshift_variant frameshift_variant	HIGH	NA19076.hp1 NA19076.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0002 a0007c0005t0002	a0007c0005t0002g0000 a0007c0005t0002g0000	1	277	0.0036	-1	c.791 others(4): Show c.791delT	p.Met others(5): Show p.Met264fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	994/2268	791/1572	264/523		chrX	TogoVar
MAGEE2_chrX_75777987_75790254	75784270	A A	AT AT	frameshift_variant frameshift_variant	HIGH	NA19076.hp1 NA19076.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0002 a0007c0005t0002	a0007c0005t0002g0000 a0007c0005t0002g0000	1	277	0.0036	1	c.781 others(4): Show c.781dupA	p.Ile others(5): Show p.Ile261fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	984/2268	781/1572	261/523		chrX	TogoVar
MAGEE2_chrX_75777987_75790254	75784478	TC TC	T T	frameshift_variant frameshift_variant	HIGH	NA19076.hp1 NA19076.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0002 a0007c0005t0002	a0007c0005t0002g0000 a0007c0005t0002g0000	1	277	0.0036	-1	c.573 others(4): Show c.573delG	p.Asn others(5): Show p.Asn192fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	776/2268	573/1572	191/523		chrX	TogoVar
MAGEE2_chrX_75777987_75790254	75784700	G G	GA GA	frameshift_variant frameshift_variant	HIGH	NA19076.hp1 NA19076.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0002 a0007c0005t0002	a0007c0005t0002g0000 a0007c0005t0002g0000	1	277	0.0036	1	c.351 others(4): Show c.351dupT	p.Leu others(5): Show p.Leu118fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	554/2268	351/1572	117/523		chrX	TogoVar
MAGEE2_chrX_75777987_75790254	75784777	G G	GA GA	frameshift_variant frameshift_variant	HIGH	NA19076.hp1 NA19076.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0002 a0007c0005t0002	a0007c0005t0002g0000 a0007c0005t0002g0000	1	277	0.0036	1	c.274 others(4): Show c.274dupT	p.Ser others(4): Show p.Ser92fs	MAGEE2	ENSG00000186675.7	transcript	ENST00000373359.4	protein_coding	1/1	477/2268	274/1572	92/523		chrX	TogoVar

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