Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	distance	chr	external
ABCA2_chr9_137002234_137033237	137030835	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-26 others(5): Show c.-2695C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2598	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030926	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0180 a0001c0001t0001g0180	1	320	0.0031	c.-27 others(5): Show c.-2786C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2689	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030931	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01256.hp1 NA20129.hp2 HG01256.hp1 NA20129.hp2	a0001 a0007 a0001 a0007	a0001c0002 a0007c0043 a0001c0002 a0007c0043	a0001c0002t0002 a0007c0043t0001 a0001c0002t0002 a0007c0043t0001	a0001c0002t0002g0004 a0007c0043t0001g0141 a0001c0002t0002g0004 a0007c0043t0001g0141	2	320	0.0063	c.-27 others(5): Show c.-2791G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2694	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030932	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01978.hp1 HG03017.hp1 HG01978.hp1 HG03017.hp1	a0003 a0017 a0003 a0017	a0003c0021 a0017c0057 a0003c0021 a0017c0057	a0003c0021t0001 a0017c0057t0001 a0003c0021t0001 a0017c0057t0001	a0003c0021t0001g0140 a0017c0057t0001g0196 a0003c0021t0001g0140 a0017c0057t0001g0196	2	320	0.0063	c.-27 others(5): Show c.-2792C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2695	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030941	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0128 a0001c0001t0001g0128	1	320	0.0031	c.-28 others(5): Show c.-2801G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2704	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030943	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0003 a0001c0014t0003	a0001c0014t0003g0162 a0001c0014t0003g0162	1	320	0.0031	c.-28 others(5): Show c.-2803G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2706	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030944	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp1 NA20752.hp2 HG01952.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0011	2	320	0.0063	c.-28 others(5): Show c.-2804C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2707	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030966	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2826C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2729	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030967	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2827C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2730	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030968	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2828C>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2731	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030971	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2831G>C	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2734	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030996	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2856C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2759	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137030999	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2859T>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2762	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031007	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0003 a0001c0014t0003	a0001c0014t0003g0155 a0001c0014t0003g0155	1	320	0.0031	c.-28 others(5): Show c.-2867C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2770	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031007	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2867C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2770	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031012	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0012 a0001c0008t0001g0012	1	320	0.0031	c.-28 others(5): Show c.-2872C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2775	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031021	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2881A>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2784	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031022	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2882G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2785	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031028	A A	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2888T>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2791	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031035	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2895A>C	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2798	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031039	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-28 others(5): Show c.-2899C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2802	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031042	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2902C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2805	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031044	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2904A>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2807	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031048	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2908T>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2811	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031050	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2910A>C	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2813	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031064	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2924C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2827	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031065	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2925A>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2828	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031066	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-29 others(5): Show c.-2926T>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2829	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031085	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0007 a0002c0004t0001g0007	1	320	0.0031	c.-29 others(5): Show c.-2945C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2848	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031090	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0060 a0001c0001t0001g0060	1	320	0.0031	c.-29 others(5): Show c.-2950C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	2853	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031335	C C	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0004 a0001c0007t0004	a0001c0007t0004g0050 a0001c0007t0004g0050	1	320	0.0031	c.-31 others(5): Show c.-3195G>C	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3098	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031475	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp1 HG00741.hp2 HG01099.hp2 others(31): Show HG00735.hp1 HG00741.hp2 HG01099.hp2 HG01109.hp2 HG01168.hp2 HG01243.hp1 HG01243.hp2 HG01261.hp2 HG01358.hp2 HG01496.hp1 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG02109.hp1 HG02129.hp2 HG02280.hp1 HG02559.hp1 HG02572.hp1 HG02717.hp1 HG02723.hp1 HG02886.hp1 HG02886.hp2 HG03098.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG06807.hp2 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18953.hp2 NA18961.hp2 NA19011.hp1 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0003 a0001c0006 a0001c0009 others(9): Show a0001c0003 a0001c0006 a0001c0009 a0001c0014 a0001c0015 a0001c0023 a0001c0025 a0001c0053 a0001c0055 a0001c0056 a0002c0004 a0003c0024	a0001c0003t0001 a0001c0006t0003 a0001c0009t0001 others(11): Show a0001c0003t0001 a0001c0006t0003 a0001c0009t0001 a0001c0014t0003 a0001c0014t0004 a0001c0015t0003 a0001c0023t0003 a0001c0023t0005 a0001c0025t0002 a0001c0053t0001 a0001c0055t0005 a0001c0056t0001 a0002c0004t0001 a0003c0024t0001	a0001c0003t0001g0054 a0001c0006t0003g0171 a0001c0006t0003g0172 others(25): Show a0001c0003t0001g0054 a0001c0006t0003g0171 a0001c0006t0003g0172 a0001c0006t0003g0173 a0001c0006t0003g0174 a0001c0006t0003g0175 a0001c0006t0003g0178 a0001c0009t0001g0018 a0001c0009t0001g0052 a0001c0009t0001g0055 a0001c0014t0003g0162 a0001c0014t0004g0158 a0001c0015t0003g0062 a0001c0015t0003g0063 a0001c0015t0003g0064 a0001c0023t0003g0157 a0001c0023t0005g0156 a0001c0025t0002g0020 a0001c0053t0001g0056 a0001c0055t0005g0161 a0001c0056t0001g0186 a0002c0004t0001g0007 a0002c0004t0001g0182 a0002c0004t0001g0183 a0002c0004t0001g0184 a0002c0004t0001g0185 a0003c0024t0001g0053 a0003c0024t0001g0057	34	320	0.1063	c.-33 others(5): Show c.-3335C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3238	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031531	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp2 HG01496.hp1 HG02129.hp2 others(5): Show HG01168.hp2 HG01496.hp1 HG02129.hp2 NA18939.hp1 NA18945.hp1 NA18953.hp2 NA18961.hp2 NA19011.hp1	a0001 a0003 a0001 a0003	a0001c0003 a0001c0009 a0001c0053 others(1): Show a0001c0003 a0001c0009 a0001c0053 a0003c0024	a0001c0003t0001 a0001c0009t0001 a0001c0053t0001 others(1): Show a0001c0003t0001 a0001c0009t0001 a0001c0053t0001 a0003c0024t0001	a0001c0003t0001g0054 a0001c0009t0001g0018 a0001c0009t0001g0052 others(4): Show a0001c0003t0001g0054 a0001c0009t0001g0018 a0001c0009t0001g0052 a0001c0009t0001g0055 a0001c0053t0001g0056 a0003c0024t0001g0053 a0003c0024t0001g0057	8	320	0.0250	c.-33 others(5): Show c.-3391C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3294	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031601	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0135 a0001c0003t0001g0135	1	320	0.0031	c.-34 others(5): Show c.-3461G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3364	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031621	T T	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0056 a0001c0056	a0001c0056t0001 a0001c0056t0001	a0001c0056t0001g0186 a0001c0056t0001g0186	1	320	0.0031	c.-34 others(5): Show c.-3481A>C	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3384	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031910	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	320	0.0031	c.-37 others(5): Show c.-3770G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3673	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031915	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	320	0.0031	c.-37 others(5): Show c.-3775C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3678	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137031950	T T	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(206): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00609.hp2 HG00639.hp2 HG00642.hp2 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG01070.hp1 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01993.hp1 HG02027.hp1 HG02027.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02895.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03710.hp1 HG03834.hp1 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18945.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18959.hp2 NA18960.hp1 NA18963.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19005.hp2 NA19009.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19059.hp1 NA19059.hp2 NA19060.hp2 NA19066.hp1 NA19070.hp1 NA19070.hp2 NA19083.hp1 NA19090.hp2 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp2 NA20805.hp1 NA20905.hp1 NA20905.hp2	a0001 a0003 a0005 others(10): Show a0001 a0003 a0005 a0007 a0008 a0009 a0010 a0011 a0013 a0014 a0015 a0016 a0017	a0001c0001 a0001c0002 a0001c0003 others(34): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0001c0011 a0001c0012 a0001c0014 a0001c0016 a0001c0017 a0001c0018 a0001c0019 a0001c0020 a0001c0027 a0001c0028 a0001c0033 a0001c0036 a0001c0037 a0001c0039 a0001c0040 a0001c0041 a0001c0046 a0001c0049 a0001c0050 a0001c0054 a0001c0058 a0003c0021 a0005c0031 a0007c0043 a0008c0042 a0009c0032 a0010c0038 a0011c0034 a0013c0047 a0014c0030 a0015c0029 a0016c0052 a0017c0057	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(39): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0003t0001 a0001c0007t0001 a0001c0007t0004 a0001c0011t0001 a0001c0012t0001 a0001c0014t0003 a0001c0016t0001 a0001c0017t0001 a0001c0018t0001 a0001c0019t0001 a0001c0020t0003 a0001c0027t0001 a0001c0028t0001 a0001c0033t0001 a0001c0036t0002 a0001c0037t0001 a0001c0039t0002 a0001c0040t0001 a0001c0041t0005 a0001c0046t0001 a0001c0049t0005 a0001c0050t0001 a0001c0054t0002 a0001c0058t0003 a0003c0021t0001 a0005c0031t0002 a0007c0043t0001 a0008c0042t0001 a0009c0032t0001 a0010c0038t0001 a0011c0034t0001 a0013c0047t0001 a0014c0030t0001 a0015c0029t0001 a0016c0052t0001 a0017c0057t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 others(130): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0061 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0110 a0001c0001t0001g0112 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0132 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0153 a0001c0001t0001g0163 a0001c0001t0001g0167 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0198 a0001c0001t0001g0201 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0004g0032 a0001c0002t0001g0138 a0001c0002t0002g0004 a0001c0002t0002g0013 a0001c0002t0002g0033 a0001c0002t0002g0046 a0001c0002t0002g0076 a0001c0002t0002g0077 a0001c0002t0002g0101 a0001c0002t0002g0105 a0001c0002t0002g0107 a0001c0002t0002g0114 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0137 a0001c0002t0002g0179 a0001c0002t0003g0043 a0001c0002t0003g0123 a0001c0003t0001g0015 a0001c0003t0001g0041 a0001c0003t0001g0135 a0001c0003t0001g0159 a0001c0003t0001g0160 a0001c0007t0001g0036 a0001c0007t0001g0122 a0001c0007t0004g0050 a0001c0011t0001g0014 a0001c0012t0001g0016 a0001c0014t0003g0155 a0001c0016t0001g0176 a0001c0016t0001g0177 a0001c0017t0001g0108 a0001c0017t0001g0119 a0001c0018t0001g0034 a0001c0019t0001g0040 a0001c0020t0003g0045 a0001c0027t0001g0083 a0001c0028t0001g0084 a0001c0033t0001g0149 a0001c0036t0002g0049 a0001c0037t0001g0131 a0001c0039t0002g0109 a0001c0040t0001g0164 a0001c0041t0005g0139 a0001c0046t0001g0071 a0001c0049t0005g0148 a0001c0050t0001g0115 a0001c0054t0002g0154 a0001c0058t0003g0197 a0003c0021t0001g0140 a0005c0031t0002g0117 a0007c0043t0001g0141 a0008c0042t0001g0165 a0009c0032t0001g0193 a0010c0038t0001g0133 a0011c0034t0001g0124 a0013c0047t0001g0166 a0014c0030t0001g0068 a0015c0029t0001g0145 a0016c0052t0001g0168 a0017c0057t0001g0196	209	320	0.6531	c.-38 others(5): Show c.-3810A>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3713	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032085	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02717.hp1 HG02886.hp1 others(2): Show HG02109.hp1 HG02717.hp1 HG02886.hp1 HG03098.hp2 NA19240.hp2	a0001 a0001	a0001c0015 a0001c0025 a0001c0015 a0001c0025	a0001c0015t0003 a0001c0025t0002 a0001c0015t0003 a0001c0025t0002	a0001c0015t0003g0062 a0001c0015t0003g0063 a0001c0015t0003g0064 others(1): Show a0001c0015t0003g0062 a0001c0015t0003g0063 a0001c0015t0003g0064 a0001c0025t0002g0020	5	320	0.0156	c.-39 others(5): Show c.-3945C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3848	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032155	C C	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp2 HG02451.hp2 HG02622.hp2 others(3): Show HG02258.hp2 HG02451.hp2 HG02622.hp2 HG02647.hp1 HG02895.hp1 HG03540.hp1	a0001 a0008 a0013 a0001 a0008 a0013	a0001c0001 a0001c0040 a0008c0042 others(1): Show a0001c0001 a0001c0040 a0008c0042 a0013c0047	a0001c0001t0001 a0001c0040t0001 a0008c0042t0001 others(1): Show a0001c0001t0001 a0001c0040t0001 a0008c0042t0001 a0013c0047t0001	a0001c0001t0001g0017 a0001c0040t0001g0164 a0008c0042t0001g0165 others(1): Show a0001c0001t0001g0017 a0001c0040t0001g0164 a0008c0042t0001g0165 a0013c0047t0001g0166	6	320	0.0188	c.-40 others(5): Show c.-4015G>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	3918	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032337	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-41 others(5): Show c.-4197T>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4100	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032338	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-41 others(5): Show c.-4198C>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4101	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032347	G G	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4207C>T	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4110	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032349	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4209T>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4112	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032350	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4210C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4113	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032351	A A	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4211T>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4114	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032352	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4212C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4115	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032353	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4213C>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4116	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032361	G G	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4221C>A	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4124	chr9	TogoVar
ABCA2_chr9_137002234_137033237	137032362	G G	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	320	0.0031	c.-42 others(5): Show c.-4222C>G	ABCA2	ENSG00000107331.18	transcript	ENST00000341511.11	protein_coding	4125	chr9	TogoVar

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