regionname | pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PROSER3_chr19_35753176_35776166 | 35759941 | G | A | stop_gained | HIGH | HG01884.hp1 HG03516.hp1 |
a0007 | a0007c0008 | a0007c0008t0001 | a0007c0008t0001g0101a0007c0008t0001g0125 | 2 | 424 | 0.0047 | 0 | c.261 others(3): Show |
p.Trp others(3): Show |
PROSER3 | ENSG00000167595.16 | transcript | ENST00000646935.2 | protein_coding | 3/11 | 301/4836 | 261/2175 | 87/724 | chr19 | TogoVar | ||
PRPF3_chr1_150316533_150358233 | 150324880 | C | CTTTT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(303): Show |
a0001a0002 | a0001c0001a0001c0002a0001c0003others(3): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(7): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(297): Show | 306 | 362 | 0.8453 | 4 | c.-48 others(15): Show |
PRPF3 | ENSG00000117360.13 | transcript | ENST00000324862.7 | protein_coding | 1/15 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
PRSS48_chr4_151272161_151296862 | 151291451 | T | G | stop_lost | HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(322): Show |
a0000a0002 | a0000c0001a0000c0002a0000c0005others(4): Show | a0000c0001t0002a0000c0001t0004a0000c0001t0005others(6): Show | a0000c0001t0002g0001a0000c0001t0002g0008a0000c0001t0002g0010others(100): Show | 325 | 428 | 0.7594 | 0 | c.985 others(3): Show |
p.Ter others(11): Show |
PRSS48 | ENSG00000189099.12 | transcript | ENST00000455694.7 | protein_coding | 5/5 | 997/1408 | 985/987 | 329/328 | chr4 | TogoVar | ||
PSG4_chr19_43187702_43210638 | 43204252 | C | T | splice_acceptor_variant others(1): Show |
HIGH | HG00438.hp1 HG00558.hp1 HG00597.hp2 others(39): Show |
a0002a0014a0018others(1): Show | a0002c0002a0014c0020a0018c0038others(1): Show | a0002c0002t0003a0002c0002t0006a0002c0002t0017others(4): Show | a0002c0002t0003g0001a0002c0002t0003g0021a0002c0002t0003g0162others(22): Show | 42 | 300 | 0.1400 | 0 | c.65- others(4): Show |
PSG4 | ENSG00000243137.8 | transcript | ENST00000405312.8 | protein_coding | 1/5 | chr19 | TogoVar | ||||||
PSG7_chr19_42919132_42942207 | 42935542 | G | A | stop_gained | HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp2 others(373): Show |
a0001a0005a0006others(1): Show | a0001c0001a0001c0002a0001c0004others(19): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0006others(32): Show | a0001c0001t0001g0001a0001c0001t0001g0005a0001c0001t0001g0006others(319): Show | 376 | 416 | 0.9039 | 0 | c.292 others(3): Show |
p.Arg others(3): Show |
PSG7 | ENSG00000221878.13 | transcript | ENST00000406070.7 | protein_coding | 2/6 | 423/2067 | 292/1260 | 98/419 | chr19 | TogoVar | ||
PSORS1C1_chr6_31109800_31145092 | 31138723 | TC | T | frameshift_variant | HIGH | HG00639.hp2 HG00642.hp1 HG00733.hp1 others(31): Show |
a0003 | a0003c0003a0003c0009 | a0003c0003t0004a0003c0003t0009a0003c0003t0011others(5): Show | a0003c0003t0004g0058a0003c0003t0004g0059a0003c0003t0004g0215others(23): Show | 34 | 449 | 0.0757 | -1 | c.118 others(4): Show |
p.His others(4): Show |
PSORS1C1 | ENSG00000204540.11 | transcript | ENST00000259881.10 | protein_coding | 5/6 | 438/939 | 118/459 | 40/152 | INFO_REALIGN_3_PRIME | chr6 | TogoVar | |
PYGL_chr14_50900217_50949483 | 50911872 | CT | C | splice_acceptor_variant others(1): Show |
HIGH | HG00140.hp1 HG00280.hp2 HG00408.hp1 others(250): Show |
a0001a0002a0003others(4): Show | a0001c0001a0001c0002a0001c0003others(18): Show | a0001c0001t0002a0001c0001t0003a0001c0001t0005others(26): Show | a0001c0001t0002g0010a0001c0001t0002g0100a0001c0001t0002g0114others(188): Show | 253 | 390 | 0.6487 | -1 | c.182 others(7): Show |
PYGL | ENSG00000100504.17 | transcript | ENST00000216392.8 | protein_coding | 15/19 | chr14 | TogoVar | ||||||
RAMACL_chr6_166578009_166591678 | 166585488 | TCAAACAA others(1183): Show |
T | frameshift_variant others(1): Show |
HIGH | HG01070.hp1 HG01071.hp1 HG01167.hp1 others(40): Show |
a0000 | a0000c0000 | a0000c0000t0006a0000c0000t0009a0000c0000t0015others(3): Show | a0000c0000t0006g0000a0000c0000t0009g0000a0000c0000t0015g0000others(3): Show | 43 | 442 | 0.0973 | -1190 | c.-20 others(9): Show |
p.Met others(3): Show |
RAMACL | ENSG00000235272.3 | transcript | ENST00000444122.3 | protein_coding | 1/1 | 1190/3670 | 1/357 | 1/118 | chr6 | TogoVar | ||
RBMXL2_chr11_7083998_7096148 | 7089456 | C | CG | frameshift_variant | HIGH | HG00621.hp1 HG00642.hp2 HG01099.hp2 others(39): Show |
a0003a0005a0010others(1): Show | a0003c0004a0003c0005a0003c0011others(4): Show | a0003c0004t0001a0003c0004t0002a0003c0004t0003others(9): Show | a0003c0004t0001g0000a0003c0004t0002g0000a0003c0004t0003g0000others(9): Show | 42 | 460 | 0.0913 | 1 | c.341 others(4): Show |
p.Gly others(5): Show |
RBMXL2 | ENSG00000170748.7 | transcript | ENST00000306904.7 | protein_coding | 1/1 | 465/2151 | 342/1179 | 114/392 | INFO_REALIGN_3_PRIME | chr11 | TogoVar | |
RFX8_chr2_101392359_101480112 | 101422474 | T | G | splice_acceptor_variant others(1): Show |
HIGH | HG00408.hp2 HG00544.hp2 HG00558.hp1 others(42): Show |
a0001a0002a0004others(4): Show | a0001c0001a0002c0002a0004c0004others(4): Show | a0001c0001t0001a0001c0001t0002a0002c0002t0001others(7): Show | a0001c0001t0001g0002a0001c0001t0001g0013a0001c0001t0001g0109others(36): Show | 45 | 352 | 0.1278 | 0 | c.73- others(4): Show |
RFX8 | ENSG00000196460.14 | transcript | ENST00000428343.6 | protein_coding | 2/11 | chr2 | TogoVar | ||||||
RHBG_chr1_156364211_156390219 | 156384556 | T | TC | frameshift_variant | HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(229): Show |
a0002a0003a0005others(9): Show | a0002c0002a0002c0008a0003c0004others(16): Show | a0002c0002t0001a0002c0008t0001a0003c0004t0001others(16): Show | a0002c0002t0001g0003a0002c0002t0001g0011a0002c0002t0001g0014others(130): Show | 232 | 438 | 0.5297 | 1 | c.127 others(5): Show |
p.Asp others(5): Show |
RHBG | ENSG00000132677.13 | transcript | ENST00000537040.6 | protein_coding | 9/10 | 1311/1790 | 1272/1377 | 424/458 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |
RIMBP3B_chr22_21378751_21394478 | 21385815 | T | TCC | frameshift_variant | HIGH | HG00639.hp2 HG01071.hp1 HG01168.hp1 others(9): Show |
a0003a0018a0063others(1): Show | a0003c0052a0003c0053a0003c0054others(9): Show | a0003c0052t0005a0003c0053t0005a0003c0054t0001others(9): Show | a0003c0052t0005g0000a0003c0053t0005g0000a0003c0054t0001g0000others(9): Show | 12 | 118 | 0.1017 | 2 | c.195 others(11): Show |
p.Gly others(5): Show |
RIMBP3B | ENSG00000274600.2 | transcript | ENST00000620804.2 | protein_coding | 1/1 | 2068/5728 | 1960/4920 | 654/1639 | INFO_REALIGN_3_PRIME | chr22 | TogoVar | |
RIPPLY3_chr21_37001702_37024662 | 37018136 | G | GTCTCTCA others(6): Show |
frameshift_variant | HIGH | HG01884.hp2 | a0000 | a0000c0005 | a0000c0005t0019 | a0000c0005t0019g0118 | 1 | 434 | 0.0023 | 13 | c.502 others(20): Show |
p.Asp others(5): Show |
RIPPLY3 | ENSG00000183145.9 | transcript | ENST00000329553.3 | protein_coding | 4/4 | 574/2099 | 503/573 | 168/190 | chr21 | TogoVar | ||
RIPPLY3_chr21_37001702_37024662 | 37018151 | G | GAAAAGAG others(3): Show |
frameshift_variant | HIGH | HG01884.hp2 | a0000 | a0000c0005 | a0000c0005t0019 | a0000c0005t0019g0118 | 1 | 434 | 0.0023 | 10 | c.517 others(17): Show |
p.Gly others(5): Show |
RIPPLY3 | ENSG00000183145.9 | transcript | ENST00000329553.3 | protein_coding | 4/4 | 589/2099 | 518/573 | 173/190 | chr21 | TogoVar | ||
RIPPLY3_chr21_37001702_37024662 | 37018205 | T | C | stop_lost | HIGH | HG01884.hp2 | a0000 | a0000c0005 | a0000c0005t0019 | a0000c0005t0019g0118 | 1 | 434 | 0.0023 | 0 | c.571 others(3): Show |
p.Ter others(11): Show |
RIPPLY3 | ENSG00000183145.9 | transcript | ENST00000329553.3 | protein_coding | 4/4 | 642/2099 | 571/573 | 191/190 | chr21 | TogoVar | ||
RIPPLY3_chr21_37001702_37024662 | 37018207 | A | G | stop_lost | HIGH | HG01884.hp2 | a0000 | a0000c0005 | a0000c0005t0019 | a0000c0005t0019g0118 | 1 | 434 | 0.0023 | 0 | c.573 others(3): Show |
p.Ter others(11): Show |
RIPPLY3 | ENSG00000183145.9 | transcript | ENST00000329553.3 | protein_coding | 4/4 | 644/2099 | 573/573 | 191/190 | chr21 | TogoVar | ||
RLN2_chr9_5294864_5309716 | 5302856 | AAGATATA others(6853): Show |
A | exon_loss_variant others(1): Show |
HIGH | HG00438.hp1 HG01884.hp1 HG02809.hp1 |
a0003 | a0003c0003 | a0003c0003t0007a0003c0003t0014 | a0003c0003t0007g0081a0003c0003t0007g0082a0003c0003t0014g0080 | 3 | 452 | 0.0066 | -6860 | c.-51 others(14): Show |
RLN2 | ENSG00000107014.9 | transcript | ENST00000381627.4 | protein_coding | 1/2 | chr9 | TogoVar | ||||||
S100G_chrX_16645158_16659670 | 16650997 | A | G | splice_acceptor_variant others(1): Show |
HIGH | HG00733.hp1 HG01069.hp1 HG01070.hp2 others(19): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004 | a0001c0001t0001g0007a0001c0001t0001g0010a0001c0001t0001g0044others(6): Show | 22 | 348 | 0.0632 | 0 | c.-8- others(4): Show |
S100G | ENSG00000169906.5 | transcript | ENST00000380200.3 | protein_coding | 1/2 | chrX | TogoVar | ||||||
SCAPER_chr15_76342904_76910340 | 76883817 | T | C | start_lost | HIGH | HG00140.hp2 HG00544.hp2 HG00597.hp1 others(114): Show |
a0002a0003a0005others(4): Show | a0002c0002a0002c0022a0003c0003others(5): Show | a0002c0002t0002a0002c0022t0002a0003c0003t0002others(9): Show | a0002c0002t0002g0190a0002c0002t0002g0194a0002c0002t0002g0219others(114): Show | 117 | 312 | 0.3750 | 0 | c.1A> others(1): Show |
p.Met others(2): Show |
SCAPER | ENSG00000140386.13 | transcript | ENST00000563290.6 | protein_coding | 2/32 | 102/5033 | 1/4203 | 1/1400 | chr15 | TogoVar | ||
SCART1_chr10_133448945_133474760 | 133457333 | TC | T | frameshift_variant | HIGH | HG00408.hp1 HG00544.hp2 HG00609.hp2 others(90): Show |
a0003a0004 | a0003c0003a0003c0007a0003c0008others(16): Show | a0003c0003t0003a0003c0007t0003a0003c0008t0003others(20): Show | a0003c0003t0003g0005a0003c0003t0003g0007a0003c0003t0003g0023others(62): Show | 93 | 434 | 0.2143 | -1 | c.444 others(4): Show |
p.Glu others(5): Show |
SCART1 | ENSG00000214279.13 | transcript | ENST00000640237.2 | protein_coding | 3/12 | 497/4929 | 444/3084 | 148/1027 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | |
SCART1_chr10_133448945_133474760 | 133464740 | CTGGGGTG | C | frameshift_variant | HIGH | HG00408.hp1 HG00544.hp1 HG00544.hp2 others(99): Show |
a0003a0004a0009others(8): Show | a0003c0003a0003c0007a0003c0008others(24): Show | a0003c0003t0003a0003c0007t0003a0003c0008t0003others(28): Show | a0003c0003t0003g0005a0003c0003t0003g0007a0003c0003t0003g0023others(69): Show | 102 | 434 | 0.2350 | -7 | c.211 others(16): Show |
p.Val others(5): Show |
SCART1 | ENSG00000214279.13 | transcript | ENST00000640237.2 | protein_coding | 7/12 | 2170/4929 | 2117/3084 | 706/1027 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | |
SEC14L4_chr22_30483902_30510695 | 30495277 | C | A | stop_gained | HIGH | HG01099.hp2 HG01884.hp2 HG01891.hp1 others(11): Show |
a0004a0008 | a0004c0005a0008c0018 | a0004c0005t0006a0008c0018t0006 | a0004c0005t0006g0013a0004c0005t0006g0020a0004c0005t0006g0037others(5): Show | 14 | 424 | 0.0330 | 0 | c.400 others(3): Show |
p.Glu others(4): Show |
SEC14L4 | ENSG00000133488.15 | transcript | ENST00000255858.12 | protein_coding | 5/12 | 484/2510 | 400/1221 | 134/406 | chr22 | TogoVar | ||
SERPINB11_chr18_63697960_63728893 | 63712604 | G | T | stop_gained | HIGH | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(201): Show |
a0001a0004a0013 | a0001c0002a0001c0005a0001c0009others(16): Show | a0001c0002t0001a0001c0005t0002a0001c0005t0005others(18): Show | a0001c0002t0001g0001a0001c0002t0001g0010a0001c0002t0001g0014others(79): Show | 204 | 422 | 0.4834 | 0 | c.268 others(3): Show |
p.Glu others(3): Show |
SERPINB11 | ENSG00000206072.13 | transcript | ENST00000544088.6 | protein_coding | 4/8 | 330/1735 | 268/1179 | 90/392 | chr18 | TogoVar | ||
SIGLEC11_chr19_49943985_49966172 | 49960562 | TAGAA | T | frameshift_variant | HIGH | HG00642.hp1 HG00733.hp1 HG00735.hp2 others(62): Show |
a0004a0007a0012others(3): Show | a0004c0004a0004c0008a0004c0015others(16): Show | a0004c0004t0001a0004c0004t0002a0004c0004t0005others(18): Show | a0004c0004t0001g0008a0004c0004t0001g0013a0004c0004t0001g0014others(33): Show | 65 | 452 | 0.1438 | -4 | c.446 others(11): Show |
p.Phe others(5): Show |
SIGLEC11 | ENSG00000161640.15 | transcript | ENST00000447370.6 | protein_coding | 2/11 | 540/3173 | 446/2097 | 149/698 | chr19 | TogoVar | ||
SIGLEC12_chr19_51486227_51506800 | 51501537 | G | GC | frameshift_variant | HIGH | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(226): Show |
a0001a0003a0005others(3): Show | a0001c0002a0001c0003a0001c0010others(23): Show | a0001c0002t0001a0001c0002t0003a0001c0002t0005others(27): Show | a0001c0002t0001g0001a0001c0002t0001g0004a0001c0002t0001g0012others(92): Show | 229 | 432 | 0.5301 | 1 | c.196 others(4): Show |
p.Ala others(4): Show |
SIGLEC12 | ENSG00000254521.7 | transcript | ENST00000291707.8 | protein_coding | 1/8 | 263/2269 | 196/1788 | 66/595 | chr19 | TogoVar | ||
SIGLEC5_chr19_51605960_51635401 | 51627678 | G | A | stop_gained | HIGH | HG01884.hp2 HG02258.hp1 HG02280.hp1 others(9): Show |
a0007 | a0007c0012a0007c0018a0007c0046 | a0007c0012t0001a0007c0012t0017a0007c0018t0001others(1): Show | a0007c0012t0001g0302a0007c0012t0001g0304a0007c0012t0001g0305others(7): Show | 12 | 414 | 0.0290 | 0 | c.106 others(4): Show |
p.Arg others(4): Show |
SIGLEC5 | ENSG00000268500.7 | transcript | ENST00000683636.1 | protein_coding | 6/9 | 1132/2993 | 1066/1656 | 356/551 | chr19 | TogoVar | ||
SLAIN1_chr13_77692687_77769229 | 77698132 | T | TGG | frameshift_variant | HIGH | HG00140.hp1 HG00140.hp2 HG00280.hp1 others(296): Show |
a0001a0002a0003 | a0001c0001a0001c0003a0001c0004others(2): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(9): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(279): Show | 299 | 300 | 0.9967 | 2 | c.220 others(9): Show |
p.Leu others(4): Show |
SLAIN1 | ENSG00000139737.23 | transcript | ENST00000418532.6 | protein_coding | 1/7 | 449/3009 | 222/1773 | 74/590 | INFO_REALIGN_3_PRIME | chr13 | TogoVar | |
SLAIN1_chr13_77692687_77769229 | 77698141 | G | GC | frameshift_variant | HIGH | HG00140.hp1 HG00140.hp2 HG00280.hp1 others(296): Show |
a0001a0002a0003 | a0001c0001a0001c0003a0001c0004others(2): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(9): Show | a0001c0001t0001g0001a0001c0001t0001g0002a0001c0001t0001g0003others(279): Show | 299 | 300 | 0.9967 | 1 | c.230 others(4): Show |
p.Leu others(4): Show |
SLAIN1 | ENSG00000139737.23 | transcript | ENST00000418532.6 | protein_coding | 1/7 | 458/3009 | 231/1773 | 77/590 | INFO_REALIGN_3_PRIME | chr13 | TogoVar | |
SLC12A8_chr3_125077644_125217748 | 125135756 | C | A | stop_gained | HIGH | HG01884.hp2 | a0011 | a0011c0029 | a0011c0029t0016 | a0011c0029t0016g0352 | 1 | 362 | 0.0028 | 0 | c.649 others(3): Show |
p.Glu others(4): Show |
SLC12A8 | ENSG00000221955.11 | transcript | ENST00000469902.6 | protein_coding | 6/14 | 743/3485 | 649/2145 | 217/714 | chr3 | TogoVar | ||
SLC17A3_chr6_25839856_25879243 | 25861819 | G | A | stop_gained | HIGH | HG01884.hp2 | a0009 | a0009c0007 | a0009c0007t0001 | a0009c0007t0001g0185 | 1 | 368 | 0.0027 | 0 | c.514 others(3): Show |
p.Arg others(4): Show |
SLC17A3 | ENSG00000124564.17 | transcript | ENST00000397060.8 | protein_coding | 4/13 | 624/2052 | 514/1497 | 172/498 | chr6 | TogoVar | ||
SLC28A1_chr15_84879662_84950798 | 84886788 | G | A | splice_donor_variant others(1): Show |
HIGH | HG01884.hp2 HG02055.hp1 HG02257.hp2 others(9): Show |
a0001a0002a0010others(2): Show | a0001c0021a0001c0038a0002c0037others(3): Show | a0001c0021t0001a0001c0038t0001a0002c0037t0001others(3): Show | a0001c0021t0001g0259a0001c0021t0001g0263a0001c0021t0001g0264others(9): Show | 12 | 396 | 0.0303 | 0 | c.-17 others(5): Show |
SLC28A1 | ENSG00000156222.12 | transcript | ENST00000394573.6 | protein_coding | 2/18 | chr15 | TogoVar | ||||||
SLC4A4_chr4_71182259_71577083 | 71557709 | C | CA | splice_acceptor_variant others(1): Show |
HIGH | HG01243.hp2 HG01884.hp1 HG02886.hp1 |
a0001 | a0001c0001 | a0001c0001t0016a0001c0001t0026 | a0001c0001t0016g0001a0001c0001t0016g0026a0001c0001t0026g0005 | 3 | 152 | 0.0197 | 1 | c.276 others(7): Show |
SLC4A4 | ENSG00000080493.19 | transcript | ENST00000264485.11 | protein_coding | 21/25 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | |||||
SLC4A4_chr4_71334020_71577083 | 71557709 | C | CA | splice_acceptor_variant others(1): Show |
HIGH | HG01243.hp1 HG01884.hp2 HG02886.hp1 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0018a0001c0001t0024 | a0001c0001t0001g0208a0001c0001t0018g0152a0001c0001t0018g0181others(1): Show | 4 | 234 | 0.0171 | 1 | c.263 others(7): Show |
SLC4A4 | ENSG00000080493.19 | transcript | ENST00000340595.4 | protein_coding | 18/22 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | |||||
SLC6A18_chr5_1220381_1251189 | 1240642 | C | G | stop_gained | HIGH | HG00099.hp1 HG00280.hp2 HG00323.hp1 others(178): Show |
a0001a0006a0007others(4): Show | a0001c0002a0001c0005a0001c0009others(16): Show | a0001c0002t0001a0001c0002t0002a0001c0005t0001others(22): Show | a0001c0002t0001g0004a0001c0002t0001g0018a0001c0002t0001g0019others(157): Show | 181 | 456 | 0.3969 | 0 | c.957 others(3): Show |
p.Tyr others(4): Show |
SLC6A18 | ENSG00000164363.10 | transcript | ENST00000324642.4 | protein_coding | 7/12 | 1054/2095 | 957/1887 | 319/628 | chr5 | TogoVar | ||
SMAD5_chr5_136127845_136187733 | 136147819 | A | AT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp2 HG00140.hp1 HG00140.hp2 others(137): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0003a0001c0001t0005others(18): Show | a0001c0001t0002g0007a0001c0001t0002g0008a0001c0001t0002g0009others(108): Show | 140 | 294 | 0.4762 | 1 | c.-24 others(7): Show |
SMAD5 | ENSG00000113658.18 | transcript | ENST00000545279.6 | protein_coding | 1/7 | INFO_REALIGN_3_PRIME | chr5 | TogoVar | |||||
SMC1A_chrX_53369149_53427654 | 53396337 | TG | T | frameshift_variant | HIGH | HG01884.hp1 | a0003 | a0003c0005 | a0003c0005t0001 | a0003c0005t0001g0128 | 1 | 213 | 0.0047 | -1 | c.275 others(5): Show |
p.Lys others(5): Show |
SMC1A | ENSG00000072501.19 | transcript | ENST00000322213.9 | protein_coding | 18/25 | 2805/9710 | 2751/3702 | 917/1233 | chrX | TogoVar | ||
SMC1A_chrX_53369149_53427654 | 53396542 | TG | T | frameshift_variant | HIGH | HG01884.hp1 | a0003 | a0003c0005 | a0003c0005t0001 | a0003c0005t0001g0128 | 1 | 213 | 0.0047 | -1 | c.263 others(5): Show |
p.Lys others(5): Show |
SMC1A | ENSG00000072501.19 | transcript | ENST00000322213.9 | protein_coding | 17/25 | 2691/9710 | 2637/3702 | 879/1233 | chrX | TogoVar | ||
SMCO2_chr12_27441736_27507185 | 27474914 | G | A | splice_donor_variant others(1): Show |
HIGH | HG01884.hp2 | a0002 | a0002c0019 | a0002c0019t0004 | a0002c0019t0004g0295 | 1 | 360 | 0.0028 | 0 | c.362 others(5): Show |
SMCO2 | ENSG00000165935.10 | transcript | ENST00000535986.2 | protein_coding | 4/8 | chr12 | TogoVar | ||||||
SNX27_chr1_151607050_151704080 | 151692406 | C | CT | splice_acceptor_variant others(1): Show |
HIGH | HG00099.hp2 HG00280.hp1 HG00408.hp1 others(82): Show |
a0001a0002 | a0001c0001a0001c0006a0001c0007others(1): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(48): Show | a0001c0001t0001g0113a0001c0001t0001g0117a0001c0001t0001g0118others(82): Show | 85 | 366 | 0.2322 | 1 | c.124 others(7): Show |
SNX27 | ENSG00000143376.14 | transcript | ENST00000458013.7 | protein_coding | 8/11 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
SON_chr21_33538038_33582481 | 33576378 | G | GA | frameshift_variant | HIGH | HG00280.hp1 HG00280.hp2 HG00323.hp1 others(360): Show |
a0001a0002a0003others(24): Show | a0001c0001a0001c0002a0001c0009others(50): Show | a0001c0001t0001a0001c0001t0003a0001c0002t0001others(52): Show | a0001c0001t0001g0001a0001c0001t0001g0003a0001c0001t0001g0005others(246): Show | 363 | 364 | 0.9973 | 1 | c.723 others(5): Show |
p.Ala others(6): Show |
SON | ENSG00000159140.23 | transcript | ENST00000356577.10 | protein_coding | 12/12 | 7292/8393 | 7237/7281 | 2413/2426 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | |
SON_chr21_33538038_33582481 | 33576390 | GA | G | frameshift_variant | HIGH | HG00280.hp1 HG00280.hp2 HG00323.hp1 others(360): Show |
a0001a0002a0003others(24): Show | a0001c0001a0001c0002a0001c0009others(50): Show | a0001c0001t0001a0001c0001t0003a0001c0002t0001others(52): Show | a0001c0001t0001g0001a0001c0001t0001g0003a0001c0001t0001g0005others(246): Show | 363 | 364 | 0.9973 | -1 | c.724 others(5): Show |
p.Arg others(6): Show |
SON | ENSG00000159140.23 | transcript | ENST00000356577.10 | protein_coding | 12/12 | 7303/8393 | 7248/7281 | 2416/2426 | chr21 | TogoVar | ||
SPATA22_chr17_3435019_3476819 | 3471678 | GCA | G | splice_donor_variant others(2): Show |
HIGH | HG00140.hp2 HG00733.hp1 HG01358.hp1 others(46): Show |
a0001a0002a0005others(1): Show | a0001c0001a0002c0002a0005c0012others(1): Show | a0001c0001t0001a0002c0002t0001a0002c0002t0002others(2): Show | a0001c0001t0001g0011a0001c0001t0001g0012a0001c0001t0001g0018others(39): Show | 49 | 420 | 0.1167 | -2 | c.-74 others(13): Show |
SPATA22 | ENSG00000141255.13 | transcript | ENST00000572969.6 | protein_coding | 1/8 | chr17 | TogoVar | ||||||
SPATC1L_chr21_46156160_46189459 | 46183550 | GCGGGGAG others(240): Show |
G | splice_acceptor_variant others(3): Show |
HIGH | HG01074.hp2 HG01884.hp1 HG01884.hp2 others(21): Show |
a0002a0007 | a0002c0002a0007c0007 | a0002c0002t0003a0002c0002t0026a0002c0002t0027others(1): Show | a0002c0002t0003g0004a0002c0002t0003g0009a0002c0002t0003g0042others(17): Show | 24 | 251 | 0.0956 | -247 | c.-95 others(12): Show |
SPATC1L | ENSG00000160284.15 | transcript | ENST00000291672.6 | protein_coding | 2/5 | 735 | chr21 | TogoVar | |||||
SPDYE3_chr7_100302702_100327196 | 100311775 | A | ACGTAGGT others(2770): Show |
frameshift_variant others(1): Show |
HIGH | HG01884.hp2 | a0011 | a0011c0015 | a0011c0015t0007 | a0011c0015t0007g0175 | 1 | 344 | 0.0029 | 2777 | c.671 others(2784): Show |
p.Ala others(5): Show |
SPDYE3 | ENSG00000214300.7 | transcript | ENST00000332397.6 | protein_coding | 4/11 | 856/3185 | 672/1650 | 224/549 | INFO_REALIGN_3_PRIME | chr7 | TogoVar | |
SSU72_chr1_1536673_1579863 | 1574550 | G | T | stop_gained | HIGH | HG01884.hp1 | a0002 | a0002c0003 | a0002c0003t0008 | a0002c0003t0008g0356 | 1 | 386 | 0.0026 | 0 | c.8C> others(1): Show |
p.Ser others(2): Show |
SSU72 | ENSG00000160075.12 | transcript | ENST00000291386.4 | protein_coding | 1/5 | 314/1284 | 8/585 | 3/194 | chr1 | TogoVar | ||
STAG2_chrX_123956706_124107656 | 124061743 | C | CTT | splice_acceptor_variant others(1): Show |
HIGH | HG00140.hp1 HG00735.hp2 HG01257.hp2 others(18): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0001t0002a0001c0003t0001 | a0001c0001t0001g0012a0001c0001t0001g0014a0001c0001t0001g0015others(18): Show | 21 | 276 | 0.0761 | 2 | c.153 others(15): Show |
STAG2 | ENSG00000101972.20 | transcript | ENST00000371145.8 | protein_coding | 16/34 | INFO_REALIGN_3_PRIME | chrX | TogoVar | |||||
SYNE2_chr14_63848004_64231433 | 63993818 | A | AT | splice_acceptor_variant others(1): Show |
HIGH | HG00423.hp1 HG00438.hp2 HG00609.hp2 others(75): Show |
a0001a0002a0003others(38): Show | a0001c0004a0001c0005a0001c0009others(51): Show | a0001c0004t0003a0001c0005t0001a0001c0005t0002others(59): Show | a0001c0004t0003g0071a0001c0005t0001g0030a0001c0005t0002g0044others(75): Show | 78 | 150 | 0.5200 | 1 | c.264 others(7): Show |
SYNE2 | ENSG00000054654.20 | transcript | ENST00000555002.6 | protein_coding | 21/115 | INFO_REALIGN_3_PRIME | chr14 | TogoVar | |||||
TAC4_chr17_49833300_49853069 | 49838644 | A | C | stop_lost | HIGH | HG01884.hp1 NA19240.hp1 |
a0000 | a0000c0003 | a0000c0003t0001 | a0000c0003t0001g0042 | 2 | 406 | 0.0049 | 0 | c.322 others(3): Show |
p.Ter others(11): Show |
TAC4 | ENSG00000176358.16 | transcript | ENST00000436235.6 | protein_coding | 5/5 | 374/718 | 322/324 | 108/107 | chr17 | TogoVar | ||
TAS2R46_chr12_11056365_11067294 | 11061546 | C | T | stop_gained | HIGH | HG00140.hp2 HG00544.hp2 HG00558.hp2 others(64): Show |
a0002a0007a0010 | a0002c0002a0007c0010a0010c0009 | a0002c0002t0000a0007c0010t0000a0010c0009t0000 | a0002c0002t0000g0000a0007c0010t0000g0000a0010c0009t0000g0000 | 67 | 295 | 0.2271 | 0 | c.749 others(3): Show |
p.Trp others(4): Show |
TAS2R46 | ENSG00000226761.3 | transcript | ENST00000533467.1 | protein_coding | 1/1 | 749/930 | 749/930 | 250/309 | chr12 | TogoVar | ||
TAS2R8_chr12_10801051_10812286 | 10806935 | C | A | stop_gained | HIGH | HG01884.hp2 HG03195.hp1 HG03486.hp1 |
a0004 | a0004c0006 | a0004c0006t0001 | a0004c0006t0001g0000 | 3 | 409 | 0.0073 | 0 | c.46G others(2): Show |
p.Glu others(3): Show |
TAS2R8 | ENSG00000121314.3 | transcript | ENST00000240615.3 | protein_coding | 1/1 | 352/1236 | 46/930 | 16/309 | chr12 | TogoVar |