JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	chr	external
LTB4R_chr14_24306502_24323036	24315648	G G	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02015.hp2 HG02129.hp2 HG02015.hp2 HG02129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0001 a0001c0001t0008g0001	2	428	0.0047	c.-4G others(2): Show c.-4G>T	LTB4R	ENSG00000213903.9	transcript	ENST00000345363.8	protein_coding	2/2	chr14	TogoVar
LTBP1_chr2_32941953_33404509	32946976	C C	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0150 a0001c0001t0044g0150	1	164	0.0061	c.-34 others(4): Show c.-349C>G	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	1/34	chr2	TogoVar
LTBP1_chr2_32941953_33404509	32947069	C C	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00280.hp1 HG00408.hp1 HG00408.hp2 others(32): Show HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00558.hp2 HG00639.hp2 HG00735.hp1 HG00738.hp1 HG01081.hp2 HG01106.hp2 HG01256.hp2 HG01361.hp1 HG01884.hp2 HG01928.hp2 HG01978.hp1 HG02486.hp2 HG02683.hp1 HG02738.hp1 HG02886.hp2 HG02896.hp2 HG03017.hp2 HG03704.hp1 HG03831.hp2 HG03942.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp2 NA18942.hp1 NA18944.hp2 NA18979.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19063.hp2 NA19085.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0007 others(2): Show a0001 a0002 a0007 a0008 a0011	a0001c0001 a0001c0002 a0001c0003 others(13): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0007 a0001c0010 a0001c0012 a0001c0022 a0001c0038 a0001c0049 a0002c0030 a0002c0034 a0007c0042 a0008c0037 a0011c0040	a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 others(22): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0042 a0001c0003t0003 a0001c0003t0005 a0001c0003t0006 a0001c0004t0018 a0001c0004t0041 a0001c0006t0003 a0001c0007t0005 a0001c0007t0006 a0001c0010t0018 a0001c0012t0003 a0001c0022t0043 a0001c0038t0003 a0001c0049t0040 a0002c0030t0005 a0002c0034t0005 a0007c0042t0003 a0008c0037t0005 a0011c0040t0003	a0001c0001t0003g0127 a0001c0001t0003g0129 a0001c0001t0003g0137 others(32): Show a0001c0001t0003g0127 a0001c0001t0003g0129 a0001c0001t0003g0137 a0001c0001t0003g0139 a0001c0001t0003g0141 a0001c0001t0003g0147 a0001c0001t0005g0142 a0001c0001t0006g0115 a0001c0001t0006g0134 a0001c0002t0003g0124 a0001c0002t0005g0135 a0001c0002t0006g0125 a0001c0002t0006g0152 a0001c0002t0042g0117 a0001c0003t0003g0145 a0001c0003t0005g0146 a0001c0003t0005g0153 a0001c0003t0006g0123 a0001c0003t0006g0131 a0001c0004t0018g0086 a0001c0004t0018g0138 a0001c0004t0041g0133 a0001c0006t0003g0132 a0001c0007t0005g0136 a0001c0007t0006g0161 a0001c0010t0018g0140 a0001c0012t0003g0128 a0001c0022t0043g0144 a0001c0038t0003g0148 a0001c0049t0040g0130 a0002c0030t0005g0151 a0002c0034t0005g0149 a0007c0042t0003g0143 a0008c0037t0005g0116 a0011c0040t0003g0126	35	164	0.2134	c.-25 others(4): Show c.-256C>G	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	1/34	chr2	TogoVar
LTBP1_chr2_32941953_33404509	32947232	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0037 a0001c0001t0037	a0001c0001t0037g0072 a0001c0001t0037g0072	1	164	0.0061	c.-93 others(3): Show c.-93C>T	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	1/34	chr2	TogoVar
LTBP3_chr11_65533559_65563359	65558085	A A	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0045 a0001c0001t0005g0045	1	316	0.0032	c.-12 others(4): Show c.-126T>G	LTBP3	ENSG00000168056.18	transcript	ENST00000301873.11	protein_coding	1/28	chr11	TogoVar
LTBR_chr12_6379162_6396566	6384275	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01167.hp2 HG01192.hp2 HG01261.hp2 others(15): Show HG01167.hp2 HG01192.hp2 HG01261.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02572.hp2 HG02622.hp1 HG02723.hp2 HG02818.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG03098.hp1 HG03225.hp2 HG03453.hp2 HG03579.hp2 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0006 a0003c0003 a0001c0001 a0001c0006 a0003c0003	a0001c0001t0004 a0001c0001t0006 a0001c0006t0004 others(1): Show a0001c0001t0004 a0001c0001t0006 a0001c0006t0004 a0003c0003t0004	a0001c0001t0004g0034 a0001c0001t0004g0052 a0001c0001t0004g0098 others(10): Show a0001c0001t0004g0034 a0001c0001t0004g0052 a0001c0001t0004g0098 a0001c0001t0004g0110 a0001c0001t0004g0112 a0001c0001t0004g0138 a0001c0001t0006g0011 a0001c0001t0006g0137 a0001c0006t0004g0063 a0003c0003t0004g0022 a0003c0003t0004g0129 a0003c0003t0004g0130 a0003c0003t0004g0131	18	452	0.0398	c.-84 others(3): Show c.-84C>T	LTBR	ENSG00000111321.11	transcript	ENST00000228918.9	protein_coding	1/10	chr12	TogoVar
LTC4S_chr5_179788986_179801647	179794059	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0009 a0001c0001t0004g0009	1	418	0.0024	c.-22 others(3): Show c.-22G>A	LTC4S	ENSG00000213316.10	transcript	ENST00000292596.15	protein_coding	1/5	chr5	TogoVar
LTO1_chr11_69660563_69680353	69675283	C C	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0104 a0001c0001t0031g0104	1	326	0.0031	c.-44 others(3): Show c.-44G>T	LTO1	ENSG00000149716.13	transcript	ENST00000279147.9	protein_coding	1/5	chr11	TogoVar
LTV1_chr6_143838338_143868812	143843374	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0098 a0001c0001t0005g0098	1	412	0.0024	c.-10 others(4): Show c.-104G>A	LTV1	ENSG00000135521.9	transcript	ENST00000367576.6	protein_coding	1/11	chr6	TogoVar
LUC7L3_chr17_50714603_50761219	50719639	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0245 a0001c0001t0063g0245	1	392	0.0026	c.-94 others(3): Show c.-94C>T	LUC7L3	ENSG00000108848.16	transcript	ENST00000505658.6	protein_coding	1/10	chr17	TogoVar
LUC7L_chr16_183990_234449	229356	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01891.hp1 HG03225.hp1 NA18906.hp2 HG01891.hp1 HG03225.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0335 a0001c0001t0003g0336 a0001c0001t0003g0337 a0001c0001t0003g0335 a0001c0001t0003g0336 a0001c0001t0003g0337	3	350	0.0086	c.-17 others(3): Show c.-17C>T	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding	1/10	chr16	TogoVar
LUC7L_chr16_183990_234449	229399	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00597.hp2 NA18612.hp1 NA18949.hp2 others(1): Show HG00597.hp2 NA18612.hp1 NA18949.hp2 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0338 a0001c0001t0002g0339 a0001c0001t0002g0340 others(1): Show a0001c0001t0002g0338 a0001c0001t0002g0339 a0001c0001t0002g0340 a0001c0001t0002g0341	4	350	0.0114	c.-60 others(3): Show c.-60C>T	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding	1/10	chr16	TogoVar
LUM_chr12_91097629_91116494	91111437	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18987.hp1 NA18987.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0229 a0001c0001t0022g0229	1	384	0.0026	c.-61 others(3): Show c.-61C>G	LUM	ENSG00000139329.5	transcript	ENST00000266718.5	protein_coding	1/3	chr12	TogoVar
LURAP1L_chr9_12770020_12828060	12775147	C C	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03486.hp2 HG03486.hp2	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0028 a0007c0008t0028	a0007c0008t0028g0140 a0007c0008t0028g0140	1	418	0.0024	c.-56 others(4): Show c.-569C>G	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/2	chr9	TogoVar
LURAP1L_chr9_12770020_12828060	12775192	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0029 a0001c0001t0015g0029	1	418	0.0024	c.-52 others(4): Show c.-524T>C	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/2	chr9	TogoVar
LUZP1_chr1_23079030_23173856	23109045	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00140.hp1 HG00639.hp2 HG00741.hp1 others(26): Show HG00140.hp1 HG00639.hp2 HG00741.hp1 HG01081.hp2 HG01168.hp1 HG01169.hp1 HG01934.hp1 HG02004.hp2 HG02258.hp1 HG02280.hp1 HG02451.hp1 HG02630.hp2 HG02723.hp1 HG02886.hp1 HG02895.hp2 HG02897.hp1 HG02970.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03486.hp1 HG03490.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 NA18522.hp1 NA19030.hp2 NA20752.hp2 NA20805.hp2	a0001 a0015 a0001 a0015	a0001c0001 a0001c0011 a0015c0017 a0001c0001 a0001c0011 a0015c0017	a0001c0001t0004 a0001c0001t0007 a0001c0001t0014 others(4): Show a0001c0001t0004 a0001c0001t0007 a0001c0001t0014 a0001c0001t0033 a0001c0001t0034 a0001c0011t0004 a0015c0017t0007	a0001c0001t0004g0175 a0001c0001t0004g0176 a0001c0001t0004g0177 others(26): Show a0001c0001t0004g0175 a0001c0001t0004g0176 a0001c0001t0004g0177 a0001c0001t0004g0178 a0001c0001t0004g0181 a0001c0001t0004g0182 a0001c0001t0004g0185 a0001c0001t0004g0195 a0001c0001t0004g0196 a0001c0001t0004g0197 a0001c0001t0004g0198 a0001c0001t0004g0316 a0001c0001t0007g0174 a0001c0001t0007g0179 a0001c0001t0007g0186 a0001c0001t0007g0187 a0001c0001t0007g0188 a0001c0001t0007g0189 a0001c0001t0007g0193 a0001c0001t0007g0194 a0001c0001t0007g0199 a0001c0001t0014g0172 a0001c0001t0014g0190 a0001c0001t0014g0191 a0001c0001t0033g0183 a0001c0001t0034g0192 a0001c0011t0004g0173 a0001c0011t0004g0180 a0015c0017t0007g0184	29	322	0.0901	c.-14 others(4): Show c.-143C>T	LUZP1	ENSG00000169641.15	transcript	ENST00000302291.9	protein_coding	2/4	chr1	TogoVar
LUZP1_chr1_23079030_23173856	23168827	C C	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01070.hp2 HG01074.hp1 HG01361.hp2 others(2): Show HG01070.hp2 HG01074.hp1 HG01361.hp2 HG02735.hp1 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0317 a0001c0001t0010g0318 a0001c0001t0010g0319 others(2): Show a0001c0001t0010g0317 a0001c0001t0010g0318 a0001c0001t0010g0319 a0001c0001t0010g0320 a0001c0001t0010g0321	5	322	0.0155	c.-28 others(4): Show c.-287G>T	LUZP1	ENSG00000169641.15	transcript	ENST00000302291.9	protein_coding	1/4	chr1	TogoVar
LY6G5B_chr6_31664976_31678546	31670030	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00140.hp1 HG00323.hp1 HG00408.hp1 others(172): Show HG00140.hp1 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00597.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG00741.hp2 HG01074.hp1 HG01106.hp2 HG01109.hp2 HG01168.hp2 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01257.hp2 HG01258.hp2 HG01261.hp2 HG01358.hp2 HG01361.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02027.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02071.hp2 HG02074.hp2 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp2 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03704.hp1 HG03831.hp2 HG03834.hp2 HG04184.hp1 HG04199.hp1 HG04204.hp2 HG04228.hp1 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18939.hp1 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18948.hp2 NA18949.hp2 NA18953.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18960.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18967.hp1 NA18968.hp2 NA18970.hp2 NA18973.hp1 NA18979.hp1 NA18980.hp1 NA18980.hp2 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18992.hp2 NA18993.hp2 NA18994.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp2 NA19003.hp2 NA19005.hp1 NA19006.hp2 NA19010.hp2 NA19054.hp1 NA19054.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp1 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19083.hp1 NA19083.hp2 NA19085.hp1 NA19087.hp1 NA19090.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp2 NA20805.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0008	a0001c0001 a0002c0002 a0002c0005 others(4): Show a0001c0001 a0002c0002 a0002c0005 a0002c0006 a0003c0003 a0004c0004 a0008c0010	a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 others(13): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0010 a0001c0001t0026 a0001c0001t0028 a0002c0002t0005 a0002c0002t0013 a0002c0005t0006 a0002c0006t0006 a0003c0003t0004 a0003c0003t0027 a0003c0003t0029 a0004c0004t0004 a0004c0004t0025 a0008c0010t0024	a0001c0001t0003g0001 a0001c0001t0004g0001 a0001c0001t0004g0002 others(16): Show a0001c0001t0003g0001 a0001c0001t0004g0001 a0001c0001t0004g0002 a0001c0001t0004g0006 a0001c0001t0009g0001 a0001c0001t0010g0002 a0001c0001t0026g0001 a0001c0001t0028g0002 a0002c0002t0005g0001 a0002c0002t0013g0001 a0002c0005t0006g0001 a0002c0006t0006g0001 a0002c0006t0006g0010 a0003c0003t0004g0002 a0003c0003t0027g0002 a0003c0003t0029g0002 a0004c0004t0004g0001 a0004c0004t0025g0001 a0008c0010t0024g0001	175	415	0.4217	c.-92 others(4): Show c.-921C>T	LY6G5B	ENSG00000240053.9	transcript	ENST00000375864.5	protein_coding	1/3	chr6	TogoVar
LY6G5B_chr6_31664976_31678546	31670188	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02135.hp2 NA19011.hp1 HG02135.hp2 NA19011.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0014 a0001c0007t0014	a0001c0007t0014g0001 a0001c0007t0014g0001	2	415	0.0048	c.-76 others(4): Show c.-763G>A	LY6G5B	ENSG00000240053.9	transcript	ENST00000375864.5	protein_coding	1/3	chr6	TogoVar
LY6G5B_chr6_31664976_31678546	31670469	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01255.hp2 HG01891.hp2 HG02109.hp2 others(3): Show HG01255.hp2 HG01891.hp2 HG02109.hp2 HG02451.hp2 HG02970.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0028 a0001c0001t0010 a0001c0001t0028	a0001c0001t0010g0002 a0001c0001t0028g0002 a0001c0001t0010g0002 a0001c0001t0028g0002	6	415	0.0145	c.-48 others(4): Show c.-482C>T	LY6G5B	ENSG00000240053.9	transcript	ENST00000375864.5	protein_coding	1/3	chr6	TogoVar
LY6K_chr8_142695111_142710127	142700485	G G	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03579.hp1 NA18970.hp2 NA18978.hp2 others(3): Show HG03579.hp1 NA18970.hp2 NA18978.hp2 NA18991.hp1 NA18999.hp2 NA19072.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0004 a0001c0002t0009g0004	6	426	0.0141	c.-43 others(3): Show c.-43G>T	LY6K	ENSG00000160886.13	transcript	ENST00000292430.10	protein_coding	1/3	chr8	TogoVar
LYL1_chr19_13094033_13107858	13102576	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03654.hp2 HG03834.hp2 HG03942.hp2 others(1): Show HG03654.hp2 HG03834.hp2 HG03942.hp2 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0009 a0001c0001t0004g0009	4	366	0.0109	c.-70 others(3): Show c.-70C>T	LYL1	ENSG00000104903.5	transcript	ENST00000264824.5	protein_coding	1/4	chr19	TogoVar
LYN_chr8_55874835_56019169	55879931	G G	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02486.hp1 HG02622.hp1 HG02630.hp1 HG02486.hp1 HG02622.hp1 HG02630.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0017 a0001c0002t0017	a0001c0002t0017g0060 a0001c0002t0017g0061 a0001c0002t0017g0062 a0001c0002t0017g0060 a0001c0002t0017g0061 a0001c0002t0017g0062	3	288	0.0104	c.-17 others(4): Show c.-178G>T	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/13	chr8	TogoVar
LYPD4_chr19_41832074_41849683	41843876	A A	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02572.hp1 HG02622.hp1 HG02717.hp2 others(3): Show HG02572.hp1 HG02622.hp1 HG02717.hp2 HG03041.hp1 HG06807.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0009 a0001c0001t0007 a0001c0001t0009	a0001c0001t0007g0044 a0001c0001t0007g0142 a0001c0001t0009g0220 others(2): Show a0001c0001t0007g0044 a0001c0001t0007g0142 a0001c0001t0009g0220 a0001c0001t0009g0221 a0001c0001t0009g0222	6	428	0.0140	c.-41 others(4): Show c.-419T>C	LYPD4	ENSG00000273111.6	transcript	ENST00000609812.6	protein_coding	1/5	chr19	TogoVar
LYPD4_chr19_41832074_41849683	41844310	C C	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01934.hp1 HG01952.hp1 HG01993.hp2 HG01934.hp1 HG01952.hp1 HG01993.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0011 a0002c0003t0011	a0002c0003t0011g0249 a0002c0003t0011g0250 a0002c0003t0011g0251 a0002c0003t0011g0249 a0002c0003t0011g0250 a0002c0003t0011g0251	3	428	0.0070	c.-85 others(4): Show c.-853G>T	LYPD4	ENSG00000273111.6	transcript	ENST00000609812.6	protein_coding	1/5	chr19	TogoVar
LYPD6_chr2_149325587_149479138	149330650	C C	G G	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0146 a0001c0001t0020g0146	1	230	0.0044	c.-14 others(4): Show c.-144C>G	LYPD6	ENSG00000187123.15	transcript	ENST00000334166.9	protein_coding	1/5	chr2	TogoVar
LYPD8_chr1_248734415_248760759	248755320	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00099.hp1 HG00423.hp1 HG00438.hp1 others(69): Show HG00099.hp1 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp2 HG00597.hp1 HG00621.hp1 HG00673.hp1 HG01081.hp2 HG01168.hp1 HG01169.hp1 HG01243.hp1 HG01243.hp2 HG01891.hp1 HG02027.hp1 HG02040.hp2 HG02109.hp1 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02280.hp2 HG02559.hp1 HG02572.hp2 HG02602.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG03041.hp2 HG03209.hp1 HG03209.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18947.hp1 NA18948.hp1 NA18951.hp1 NA18952.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18967.hp2 NA18970.hp2 NA18974.hp2 NA18975.hp1 NA18980.hp1 NA18983.hp1 NA18984.hp2 NA18986.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp2 NA18994.hp1 NA19004.hp2 NA19009.hp2 NA19010.hp2 NA19056.hp1 NA19057.hp1 NA19072.hp2 NA19077.hp2 NA19079.hp1 NA19081.hp1 NA19083.hp2 NA19084.hp2 NA19085.hp2 NA19089.hp1 NA19090.hp1	a0001 a0004 a0006 a0001 a0004 a0006	a0001c0001 a0004c0004 a0006c0008 a0001c0001 a0004c0004 a0006c0008	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 others(4): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0004c0004t0002 a0006c0008t0002	a0001c0001t0002g0004 a0001c0001t0002g0006 a0001c0001t0002g0011 others(52): Show a0001c0001t0002g0004 a0001c0001t0002g0006 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0043 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0070 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0081 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0004g0089 a0001c0001t0004g0090 a0001c0001t0004g0091 a0001c0001t0005g0079 a0001c0001t0005g0080 a0001c0001t0006g0047 a0001c0001t0006g0048 a0001c0001t0008g0273 a0004c0004t0002g0044 a0006c0008t0002g0062	72	374	0.1925	c.-13 others(4): Show c.-131C>T	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	2/7	chr1	TogoVar
LYRM4_chr6_5103419_5265950	5260903	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00597.hp1 HG01074.hp1 HG01081.hp2 others(91): Show HG00597.hp1 HG01074.hp1 HG01081.hp2 HG01109.hp2 HG01168.hp1 HG01243.hp1 HG01361.hp1 HG01496.hp2 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01934.hp2 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01981.hp2 HG01993.hp1 HG02015.hp2 HG02071.hp2 HG02074.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02155.hp2 HG02165.hp1 HG02257.hp1 HG02258.hp1 HG02280.hp1 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02965.hp1 HG02970.hp1 HG02976.hp2 HG03041.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03704.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18747.hp2 NA18942.hp2 NA18944.hp1 NA18950.hp2 NA18956.hp2 NA18963.hp2 NA18969.hp1 NA18972.hp1 NA18983.hp2 NA18986.hp1 NA18991.hp2 NA18993.hp2 NA18998.hp2 NA19000.hp2 NA19004.hp2 NA19005.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19058.hp1 NA19060.hp2 NA19063.hp1 NA19070.hp1 NA19076.hp2 NA19082.hp2 NA19090.hp2 NA20129.hp2 NA20300.hp2 NA21309.hp1 NA21309.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0005 a0002c0002t0006 others(5): Show a0002c0002t0003 a0002c0002t0005 a0002c0002t0006 a0002c0002t0008 a0002c0002t0009 a0002c0002t0015 a0002c0002t0019 a0002c0002t0020	a0002c0002t0003g0193 a0002c0002t0003g0194 a0002c0002t0003g0201 others(91): Show a0002c0002t0003g0193 a0002c0002t0003g0194 a0002c0002t0003g0201 a0002c0002t0003g0204 a0002c0002t0003g0208 a0002c0002t0003g0209 a0002c0002t0003g0212 a0002c0002t0003g0215 a0002c0002t0003g0216 a0002c0002t0003g0217 a0002c0002t0003g0222 a0002c0002t0003g0223 a0002c0002t0003g0225 a0002c0002t0003g0226 a0002c0002t0003g0234 a0002c0002t0003g0235 a0002c0002t0003g0236 a0002c0002t0003g0237 a0002c0002t0003g0238 a0002c0002t0003g0239 a0002c0002t0003g0241 a0002c0002t0003g0252 a0002c0002t0003g0255 a0002c0002t0003g0256 a0002c0002t0003g0257 a0002c0002t0003g0258 a0002c0002t0003g0259 a0002c0002t0003g0264 a0002c0002t0003g0272 a0002c0002t0003g0275 a0002c0002t0005g0196 a0002c0002t0005g0197 a0002c0002t0005g0198 a0002c0002t0005g0199 a0002c0002t0005g0200 a0002c0002t0005g0205 a0002c0002t0005g0206 a0002c0002t0005g0207 a0002c0002t0005g0210 a0002c0002t0005g0218 a0002c0002t0005g0230 a0002c0002t0005g0231 a0002c0002t0005g0242 a0002c0002t0005g0244 a0002c0002t0005g0245 a0002c0002t0005g0246 a0002c0002t0005g0253 a0002c0002t0005g0254 a0002c0002t0005g0265 a0002c0002t0005g0269 a0002c0002t0005g0270 a0002c0002t0005g0277 a0002c0002t0005g0278 a0002c0002t0005g0279 a0002c0002t0006g0202 a0002c0002t0006g0203 a0002c0002t0006g0214 a0002c0002t0006g0219 a0002c0002t0006g0220 a0002c0002t0006g0224 a0002c0002t0006g0227 a0002c0002t0006g0228 a0002c0002t0006g0229 a0002c0002t0006g0232 a0002c0002t0006g0233 a0002c0002t0006g0240 a0002c0002t0006g0261 a0002c0002t0006g0262 a0002c0002t0006g0263 a0002c0002t0006g0268 a0002c0002t0006g0271 a0002c0002t0006g0273 a0002c0002t0006g0274 a0002c0002t0008g0195 a0002c0002t0008g0211 a0002c0002t0008g0213 a0002c0002t0008g0221 a0002c0002t0008g0248 a0002c0002t0008g0250 a0002c0002t0008g0251 a0002c0002t0008g0260 a0002c0002t0008g0266 a0002c0002t0008g0267 a0002c0002t0008g0276 a0002c0002t0009g0280 a0002c0002t0009g0281 a0002c0002t0009g0282 a0002c0002t0009g0283 a0002c0002t0009g0284 a0002c0002t0009g0285 a0002c0002t0015g0243 a0002c0002t0015g0249 a0002c0002t0019g0247 a0002c0002t0020g0286	94	286	0.3287	c.-17 others(4): Show c.-170C>T	LYRM4	ENSG00000214113.11	transcript	ENST00000330636.9	protein_coding	1/3	chr6	TogoVar
LYSMD1_chr1_151154748_151170902	151165879	G G	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03239.hp1 HG03688.hp1 NA20805.hp2 HG03239.hp1 HG03688.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0031 a0001c0001t0033g0031	3	344	0.0087	c.-62 others(4): Show c.-621C>G	LYSMD1	ENSG00000163155.12	transcript	ENST00000368908.10	protein_coding	1/3	chr1	TogoVar
LYZL2_chr10_30606779_30634753	30629728	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0401 a0001c0002t0004g0401	1	456	0.0022	c.-16 others(4): Show c.-161A>G	LYZL2	ENSG00000151033.10	transcript	ENST00000647634.2	protein_coding	1/5	chr10	TogoVar
LZTFL1_chr3_45818316_45847119	45842012	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0101 a0001c0001t0022g0101	1	390	0.0026	c.-21 others(3): Show c.-21C>T	LZTFL1	ENSG00000163818.20	transcript	ENST00000296135.11	protein_coding	1/10	chr3	TogoVar
LZTS1_chr8_20241165_20308963	20255190	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18951.hp2 NA18998.hp2 NA19070.hp2 NA18951.hp2 NA18998.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0054 a0001c0001t0030 a0001c0001t0054	a0001c0001t0030g0136 a0001c0001t0030g0336 a0001c0001t0054g0163 a0001c0001t0030g0136 a0001c0001t0030g0336 a0001c0001t0054g0163	3	406	0.0074	c.-9C others(2): Show c.-9C>T	LZTS1	ENSG00000061337.16	transcript	ENST00000381569.5	protein_coding	2/4	chr8	TogoVar
LZTS1_chr8_20241165_20308963	20255293	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA19000.hp2 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0322 a0001c0001t0031g0322	1	406	0.0025	c.-11 others(4): Show c.-112G>A	LZTS1	ENSG00000061337.16	transcript	ENST00000381569.5	protein_coding	2/4	chr8	TogoVar
M1AP_chr2_74552883_74653330	74640301	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0023 a0001c0001t0015g0023	1	248	0.0040	c.-26 others(3): Show c.-26A>G	M1AP	ENSG00000159374.18	transcript	ENST00000421985.2	protein_coding	2/11	chr2	TogoVar
MAB21L2_chr4_150577151_150589693	150582720	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02055.hp2 HG02896.hp2 HG02897.hp2 others(8): Show HG02055.hp2 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG03098.hp1 HG03139.hp2 HG03209.hp2 NA18906.hp1 NA19030.hp1 NA19240.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0000 a0001c0001t0003g0000	11	416	0.0264	c.-31 others(4): Show c.-310C>T	MAB21L2	ENSG00000181541.6	transcript	ENST00000317605.6	protein_coding	1/1	chr4	TogoVar
MAB21L2_chr4_150577151_150589693	150582860	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02280.hp2 HG02976.hp1 NA19043.hp1 HG02280.hp2 HG02976.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0000 a0001c0001t0009g0000	3	416	0.0072	c.-17 others(4): Show c.-170C>T	MAB21L2	ENSG00000181541.6	transcript	ENST00000317605.6	protein_coding	1/1	chr4	TogoVar
MAD1L1_chr7_1810795_2237945	2232886	G G	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0001 a0001c0001t0008g0001	1	264	0.0038	c.-20 others(4): Show c.-204C>A	MAD1L1	ENSG00000002822.16	transcript	ENST00000265854.12	protein_coding	1/19	chr7	TogoVar
MAD2L1_chr4_120050623_120071848	120066840	C C	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG03490.hp2 HG03492.hp1 HG03490.hp2 HG03492.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0031 a0001c0001t0017g0031	2	382	0.0052	c.-10 others(4): Show c.-106G>T	MAD2L1	ENSG00000164109.14	transcript	ENST00000296509.11	protein_coding	1/5	chr4	TogoVar
MAEL_chr1_166984280_167027214	166989344	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18987.hp2 NA19055.hp2 NA18987.hp2 NA19055.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0212 a0002c0002t0002g0224 a0002c0002t0002g0212 a0002c0002t0002g0224	2	408	0.0049	c.-9C others(2): Show c.-9C>T	MAEL	ENSG00000143194.13	transcript	ENST00000367872.9	protein_coding	1/12	chr1	TogoVar
MAFA_chr8_143423064_143435732	143430630	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0000 a0001c0001t0042g0000	1	446	0.0022	c.-22 others(4): Show c.-224C>T	MAFA	ENSG00000182759.4	transcript	ENST00000333480.3	protein_coding	1/1	chr8	TogoVar
MAFK_chr7_1525702_1548043	1539187	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02738.hp1 HG03490.hp2 HG03492.hp1 others(1): Show HG02738.hp1 HG03490.hp2 HG03492.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0058 a0001c0001t0017 a0001c0001t0058	a0001c0001t0017g0009 a0001c0001t0058g0074 a0001c0001t0017g0009 a0001c0001t0058g0074	4	380	0.0105	c.-6C others(2): Show c.-6C>T	MAFK	ENSG00000198517.10	transcript	ENST00000343242.9	protein_coding	2/3	chr7	TogoVar
MAF_chr16_79588838_79605737	79600054	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00408.hp2 HG00423.hp2 HG00544.hp2 others(86): Show HG00408.hp2 HG00423.hp2 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00673.hp2 HG01192.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01943.hp1 HG01981.hp2 HG02004.hp1 HG02027.hp2 HG02040.hp1 HG02071.hp2 HG02129.hp1 HG02155.hp1 HG02165.hp1 HG02273.hp1 HG02293.hp1 HG02698.hp2 HG03017.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp2 HG04199.hp1 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18940.hp1 NA18941.hp1 NA18942.hp2 NA18945.hp1 NA18950.hp1 NA18952.hp1 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18956.hp2 NA18957.hp1 NA18959.hp2 NA18960.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18970.hp2 NA18971.hp2 NA18972.hp1 NA18974.hp2 NA18975.hp2 NA18981.hp1 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18994.hp2 NA18998.hp2 NA19001.hp2 NA19003.hp2 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19067.hp1 NA19075.hp1 NA19075.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19083.hp1 NA19088.hp2 NA20752.hp2 NA20905.hp1 NA20905.hp2	a0001 a0004 a0005 others(1): Show a0001 a0004 a0005 a0007	a0001c0001 a0001c0012 a0004c0006 others(2): Show a0001c0001 a0001c0012 a0004c0006 a0005c0013 a0007c0008	a0001c0001t0003 a0001c0001t0004 a0001c0001t0014 others(6): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0014 a0001c0001t0015 a0001c0001t0019 a0001c0012t0004 a0004c0006t0003 a0005c0013t0014 a0007c0008t0004	a0001c0001t0003g0003 a0001c0001t0003g0008 a0001c0001t0003g0017 others(49): Show a0001c0001t0003g0003 a0001c0001t0003g0008 a0001c0001t0003g0017 a0001c0001t0003g0039 a0001c0001t0003g0040 a0001c0001t0003g0044 a0001c0001t0003g0046 a0001c0001t0003g0077 a0001c0001t0003g0079 a0001c0001t0003g0080 a0001c0001t0003g0081 a0001c0001t0003g0082 a0001c0001t0003g0084 a0001c0001t0003g0088 a0001c0001t0003g0089 a0001c0001t0003g0090 a0001c0001t0003g0091 a0001c0001t0003g0092 a0001c0001t0003g0093 a0001c0001t0003g0095 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0105 a0001c0001t0003g0107 a0001c0001t0003g0108 a0001c0001t0004g0012 a0001c0001t0004g0020 a0001c0001t0004g0037 a0001c0001t0004g0041 a0001c0001t0004g0043 a0001c0001t0004g0045 a0001c0001t0004g0078 a0001c0001t0004g0083 a0001c0001t0004g0085 a0001c0001t0004g0086 a0001c0001t0004g0087 a0001c0001t0004g0094 a0001c0001t0004g0096 a0001c0001t0004g0101 a0001c0001t0004g0102 a0001c0001t0004g0103 a0001c0001t0004g0104 a0001c0001t0004g0106 a0001c0001t0014g0042 a0001c0001t0015g0019 a0001c0001t0019g0038 a0001c0012t0004g0109 a0004c0006t0003g0036 a0005c0013t0014g0110 a0007c0008t0004g0076	89	468	0.1902	c.-15 others(4): Show c.-152C>T	MAF	ENSG00000178573.7	transcript	ENST00000326043.5	protein_coding	1/2	chr16	TogoVar
MAF_chr16_79588838_79605737	79600428	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01515.hp2 HG01517.hp1 HG02698.hp1 others(1): Show HG01515.hp2 HG01517.hp1 HG02698.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0040 a0001c0001t0018 a0001c0001t0040	a0001c0001t0018g0070 a0001c0001t0018g0250 a0001c0001t0040g0249 a0001c0001t0018g0070 a0001c0001t0018g0250 a0001c0001t0040g0249	4	468	0.0086	c.-52 others(4): Show c.-526C>T	MAF	ENSG00000178573.7	transcript	ENST00000326043.5	protein_coding	1/2	chr16	TogoVar
MAF_chr16_79588838_79605737	79600726	T T	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	NA18997.hp1 NA18997.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0046 a0006c0007t0046	a0006c0007t0046g0256 a0006c0007t0046g0256	1	468	0.0021	c.-82 others(4): Show c.-824A>T	MAF	ENSG00000178573.7	transcript	ENST00000326043.5	protein_coding	1/2	chr16	TogoVar
MAGEA10_chrX_152128310_152143577	152136908	T T	C C	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0126 a0001c0001t0020g0126	1	282	0.0036	c.-17 others(4): Show c.-177A>G	MAGEA10	ENSG00000124260.12	transcript	ENST00000370323.9	protein_coding	2/4	chrX	TogoVar
MAGEA12_chrX_152728757_152742669	152735215	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02280.hp1 HG02572.hp1 HG02886.hp2 others(2): Show HG02280.hp1 HG02572.hp1 HG02886.hp2 NA19030.hp2 NA20300.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0004c0007 a0001c0002 a0004c0007	a0001c0002t0005 a0004c0007t0005 a0001c0002t0005 a0004c0007t0005	a0001c0002t0005g0004 a0004c0007t0005g0004 a0001c0002t0005g0004 a0004c0007t0005g0004	5	322	0.0155	c.-11 others(4): Show c.-114C>T	MAGEA12	ENSG00000213401.10	transcript	ENST00000393869.8	protein_coding	2/3	chrX	TogoVar
MAGEA12_chrX_152728757_152742669	152736106	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02809.hp1 HG02896.hp1 HG02976.hp1 HG02809.hp1 HG02896.hp1 HG02976.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0006 a0002c0004t0006	a0002c0004t0006g0010 a0002c0004t0006g0010	3	322	0.0093	c.-56 others(3): Show c.-56C>T	MAGEA12	ENSG00000213401.10	transcript	ENST00000393869.8	protein_coding	3/3	chrX	TogoVar
MAGEA1_chrX_153174284_153188880	153182370	C C	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	a0002 a0004 a0002 a0004	a0002c0002 a0004c0006 a0002c0002 a0004c0006	a0002c0002t0002 a0002c0002t0012 a0004c0006t0002 a0002c0002t0002 a0002c0002t0012 a0004c0006t0002	a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 others(7): Show a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0004c0006t0002g0015	95	343	0.2770	c.-20 others(3): Show c.-20C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	chrX	TogoVar
MAGEA2_chrX_152744863_152758842	152753830	G G	A A	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0040 a0001c0001t0014g0040	1	191	0.0052	c.-37 others(4): Show c.-373C>T	MAGEA2	ENSG00000268606.6	transcript	ENST00000684311.1	protein_coding	1/5	chrX	TogoVar
MAGEA3_chrX_152693794_152707347	152700771	A A	T T	5_prime_UTR_premature_start_codon_gain_variant 5_prime_UTR_premature_start_codon_gain_variant	LOW	HG01884.hp2 HG02280.hp1 HG02809.hp1 others(6): Show HG01884.hp2 HG02280.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2 NA19030.hp2 NA19240.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0006 a0004c0004 a0001c0001 a0003c0006 a0004c0004	a0001c0001t0004 a0003c0006t0010 a0004c0004t0008 a0001c0001t0004 a0003c0006t0010 a0004c0004t0008	a0001c0001t0004g0005 a0001c0001t0004g0012 a0001c0001t0004g0016 others(2): Show a0001c0001t0004g0005 a0001c0001t0004g0012 a0001c0001t0004g0016 a0003c0006t0010g0009 a0004c0004t0008g0007	9	192	0.0469	c.-62 others(3): Show c.-62A>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	chrX	TogoVar

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