Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
AARD_chr8_116933207_116949487	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	JPT	EAS	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	NA18976	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0002	JPT	EAS	AARD	chr8	116933207	116949487
ABT1_chr6_26591953_26605739	NA18976	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	JPT	EAS	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	NA18976	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0003	JPT	EAS	ABT1	chr6	26591953	26605739
ACAD8_chr11_134248568_134270855	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0076	JPT	EAS	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ACAD8	chr11	134248568	134270855
ACTL10_chr20_33661943_33673525	NA18976	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0000	JPT	EAS	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	JPT	EAS	ACTL10	chr20	33661943	33673525
ACTL7B_chr9_108849588_108860986	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	JPT	EAS	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	NA18976	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0000	JPT	EAS	ACTL7B	chr9	108849588	108860986
ACYP1_chr14_75048243_75069024	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0077	JPT	EAS	ACYP1	chr14	75048243	75069024
ACYP1_chr14_75048243_75069024	NA18976	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	JPT	EAS	ACYP1	chr14	75048243	75069024
ADAM30_chr1_119888533_119901515	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	JPT	EAS	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	JPT	EAS	ADAM30	chr1	119888533	119901515
AGTR2_chrX_116165744_116179974	NA18976	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0003	JPT	EAS	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	NA18976	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0001	JPT	EAS	AGTR2	chrX	116165744	116179974
AIPL1_chr17_6418738_6440121	NA18976	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0298	JPT	EAS	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	NA18976	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0121	JPT	EAS	AIPL1	chr17	6418738	6440121
ALG10B_chr12_38311774_38334721	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	NA18976	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0003	JPT	EAS	ALG10B	chr12	38311774	38334721
ALPI_chr2_232451153_232465753	NA18976	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0004	JPT	EAS	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ALPI	chr2	232451153	232465753
ALYREF_chr17_81882835_81896586	NA18976	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0011	JPT	EAS	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ALYREF	chr17	81882835	81896586
AMIGO2_chr12_47071447_47084959	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	JPT	EAS	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	NA18976	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0013	JPT	EAS	AMIGO2	chr12	47071447	47084959
ANAPC11_chr17_81886723_81905255	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0022	JPT	EAS	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0101	JPT	EAS	ANAPC11	chr17	81886723	81905255
ANKRD34A_chr1_145954441_145969575	NA18976	hp1	a0001	a0001c0001	a0001c0001t0013	a0001c0001t0013g0005	JPT	EAS	ANKRD34A	chr1	145954441	145969575
ANKRD34A_chr1_145954441_145969575	NA18976	hp2	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0018	JPT	EAS	ANKRD34A	chr1	145954441	145969575
ANKZF1_chr2_219224806_219241679	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0010	JPT	EAS	ANKZF1	chr2	219224806	219241679
ANP32D_chr12_48467559_48478622	NA18976	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0000	JPT	EAS	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	JPT	EAS	ANP32D	chr12	48467559	48478622
APOA5_chr11_116784367_116796879	NA18976	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0014	JPT	EAS	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	APOA5	chr11	116784367	116796879
APOL5_chr22_35712872_35734483	NA18976	hp1	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0105	JPT	EAS	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	NA18976	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0001	JPT	EAS	APOL5	chr22	35712872	35734483
ARF5_chr7_127583411_127596700	NA18976	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0024	JPT	EAS	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ARF5	chr7	127583411	127596700
ARHGEF25_chr12_57606435_57622245	NA18976	hp1	a0001	a0001c0001	a0001c0001t0012	a0001c0001t0012g0001	JPT	EAS	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	NA18976	hp2	a0003	a0003c0003	a0003c0003t0002	a0003c0003t0002g0003	JPT	EAS	ARHGEF25	chr12	57606435	57622245
ARMCX4_chrX_101480456_101500807	NA18976	hp1	a0055	a0055c0032	a0055c0032t0002	a0055c0032t0002g0035	JPT	EAS	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	NA18976	hp2	a0031	a0031c0052	a0031c0052t0001	a0031c0052t0001g0002	JPT	EAS	ARMCX4	chrX	101480456	101500807
ARMH2_chr6_24792335_24803917	NA18976	hp1	a0000	a0000c0004	a0000c0004t0001	a0000c0004t0001g0006	JPT	EAS	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	JPT	EAS	ARMH2	chr6	24792335	24803917
ASB17_chr1_75913873_75937404	NA18976	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0083	JPT	EAS	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	NA18976	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0119	JPT	EAS	ASB17	chr1	75913873	75937404
ASB6_chr9_129629605_129647151	NA18976	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0003	JPT	EAS	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	NA18976	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	JPT	EAS	ASB6	chr9	129629605	129647151