Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
FAM89A 224 87 33 17 0 0 0.868 0.337 0.128 0.066 0.000 0.000 chr1 231013958 231045254
FAM89B 183 55 70 47 0 0 0.709 0.213 0.271 0.182 0.000 0.000 chr11 65567538 65579190
FAM8A1 186 64 62 35 1 0 0.721 0.248 0.240 0.136 0.004 0.000 chr6 17595302 17616715
FAM90A10 63 16 80 42 72 11 0.244 0.062 0.310 0.163 0.279 0.043 chr8 7763977 7776988
FAM90A14 3 0 31 3 1 0 0.012 0.000 0.120 0.012 0.004 0.000 chr8 7710443 7723453
FAM90A16 35 1 66 21 32 0 0.136 0.004 0.256 0.081 0.124 0.000 chr8 7725739 7738749
FAM90A17 54 19 72 37 72 5 0.209 0.074 0.279 0.143 0.279 0.019 chr8 7741034 7754044
FAM90A18 22 0 40 4 15 0 0.085 0.000 0.155 0.016 0.058 0.000 chr8 7718091 7731101
FAM90A19 58 24 65 31 82 11 0.225 0.093 0.252 0.120 0.318 0.043 chr8 7748682 7761692
FAM90A1 232 86 22 17 4 2 0.899 0.333 0.085 0.066 0.016 0.008 chr12 8216260 8232618
FAM90A22 44 14 79 31 17 8 0.171 0.054 0.306 0.120 0.066 0.031 chr8 7566995 7580006
FAM90A23 71 21 97 41 34 9 0.275 0.081 0.376 0.159 0.132 0.035 chr8 7574644 7587653
FAM90A26 0 0 49 17 0 0 0.000 0.000 0.190 0.066 0.000 0.000 chr4 9165409 9181730
FAM90A7 9 2 48 15 2 1 0.035 0.008 0.186 0.058 0.008 0.004 chr8 7551700 7564712
FAM90A8 54 11 77 34 48 2 0.209 0.043 0.298 0.132 0.186 0.008 chr8 7733387 7746396
FAM90A9 46 14 62 35 93 9 0.178 0.054 0.240 0.136 0.360 0.035 chr8 7756330 7769340
FAM91A1 168 54 74 40 0 0 0.651 0.209 0.287 0.155 0.000 0.000 chr8 123763439 123820452
FAM98A 202 72 53 32 0 0 0.783 0.279 0.205 0.124 0.000 0.000 chr2 33578660 33604299
FAM98B 199 68 50 33 0 0 0.771 0.264 0.194 0.128 0.000 0.000 chr15 38449127 38492710
FAM98C 189 74 62 25 0 0 0.733 0.287 0.240 0.097 0.000 0.000 chr19 38398093 38414084
FAM9A 90 27 161 73 0 0 0.349 0.105 0.624 0.283 0.000 0.000 chrX 8785795 8806383
FAM9B 67 19 173 75 0 0 0.260 0.074 0.671 0.291 0.000 0.000 chrX 9019232 9039127
FAM9C 93 31 165 74 0 0 0.360 0.120 0.640 0.287 0.000 0.000 chrX 13030617 13049620
FAN1 151 37 93 59 0 0 0.585 0.143 0.360 0.229 0.000 0.000 chr15 30898915 30948108
FANCA 166 37 74 55 0 0 0.643 0.143 0.287 0.213 0.000 0.000 chr16 89732549 89821647
FANCB 74 11 175 88 0 0 0.287 0.043 0.678 0.341 0.000 0.000 chrX 14838405 14878069
FANCC 138 34 89 55 0 0 0.535 0.132 0.345 0.213 0.000 0.000 chr9 95094054 95322709
FANCD2OS 172 53 81 50 2 0 0.667 0.205 0.314 0.194 0.008 0.000 chr3 10098937 10113255
FANCD2 120 22 107 61 0 0 0.465 0.085 0.415 0.236 0.000 0.000 chr3 10021437 10106932
FANCE 200 73 57 31 0 0 0.775 0.283 0.221 0.120 0.000 0.000 chr6 35447338 35472102
FANCF 209 76 48 28 0 0 0.810 0.295 0.186 0.109 0.000 0.000 chr11 22617533 22630823
FANCG 212 74 46 31 0 0 0.822 0.287 0.178 0.120 0.000 0.000 chr9 35068839 35084942
FANCI 172 54 74 46 0 0 0.667 0.209 0.287 0.178 0.000 0.000 chr15 89238979 89322131
FANCL 194 71 53 26 0 0 0.752 0.275 0.205 0.101 0.000 0.000 chr2 58154247 58246325
FANCM 118 29 114 64 0 0 0.457 0.112 0.442 0.248 0.000 0.000 chr14 45130930 45205890
FANK1 184 64 48 31 0 0 0.713 0.248 0.186 0.120 0.000 0.000 chr10 125891564 126014592
FAP 116 33 112 53 0 0 0.450 0.128 0.434 0.205 0.000 0.000 chr2 162165684 162248445
FAR1 175 54 61 36 0 0 0.678 0.209 0.236 0.140 0.000 0.000 chr11 13663668 13737346
FAR2 162 52 67 38 0 0 0.628 0.202 0.260 0.147 0.000 0.000 chr12 29144278 29340616
FARP1 108 15 61 33 0 0 0.419 0.058 0.236 0.128 0.000 0.000 chr13 98138094 98460176
FARP2 188 62 51 32 0 0 0.729 0.240 0.198 0.124 0.000 0.000 chr2 241351285 241499841
FARS2 84 11 86 46 0 0 0.326 0.043 0.333 0.178 0.000 0.000 chr6 5256513 5776583
FARSA 172 47 77 52 0 0 0.667 0.182 0.298 0.202 0.000 0.000 chr19 12917479 12938711
FARSB 171 57 76 42 0 0 0.663 0.221 0.295 0.163 0.000 0.000 chr2 222561899 222661092
FASLG 212 72 45 32 0 0 0.822 0.279 0.174 0.124 0.000 0.000 chr1 172654103 172671876
FASN 209 62 38 32 0 0 0.810 0.240 0.147 0.124 0.000 0.000 chr17 82073338 82103236
FASTKD1 195 70 58 32 0 0 0.756 0.271 0.225 0.124 0.000 0.000 chr2 169523508 169578865
FASTKD2 196 67 57 35 0 0 0.760 0.260 0.221 0.136 0.000 0.000 chr2 206760606 206801189
FASTKD3 230 89 24 13 0 0 0.891 0.345 0.093 0.050 0.000 0.000 chr5 7854159 7874031
FASTKD5 206 67 41 28 0 0 0.798 0.260 0.159 0.109 0.000 0.000 chr20 3141519 3164865