Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GALNT3 192 65 56 33 0 0 0.744 0.252 0.217 0.128 0.000 0.000 chr2 165742588 165799247
view GALNT4 215 79 42 25 1 1 0.833 0.306 0.163 0.097 0.004 0.004 chr12 89514412 89529796
view GALNT5 140 43 84 44 0 0 0.543 0.167 0.326 0.171 0.000 0.000 chr2 157252705 157323491
view GALNT6 213 73 34 25 0 0 0.826 0.283 0.132 0.097 0.000 0.000 chr12 51346252 51396406
view GALNT7 132 30 99 59 0 0 0.512 0.116 0.384 0.229 0.000 0.000 chr4 173163811 173328967
view GALNT8 168 56 77 43 0 0 0.651 0.217 0.298 0.167 0.000 0.000 chr12 4715400 4777726
view GALNT9 91 24 103 42 0 0 0.353 0.093 0.399 0.163 0.000 0.000 chr12 132191372 132334589
view GALNTL5 191 56 50 38 0 0 0.740 0.217 0.194 0.147 0.000 0.000 chr7 151951446 152024929
view GALNTL6 20 0 115 51 0 0 0.078 0.000 0.446 0.198 0.000 0.000 chr4 171808404 173046559
view GALP 221 79 33 22 0 0 0.857 0.306 0.128 0.085 0.000 0.000 chr19 56171008 56190775
view GALR1 182 59 62 36 0 0 0.705 0.229 0.240 0.140 0.000 0.000 chr18 77244848 77282900
view GALR2 202 72 55 32 0 0 0.783 0.279 0.213 0.124 0.000 0.000 chr17 76069781 76082537
view GALR3 200 73 56 30 0 0 0.775 0.283 0.217 0.116 0.000 0.000 chr22 37818382 37830485
view GALT 207 72 47 30 0 0 0.802 0.279 0.182 0.116 0.000 0.000 chr9 34641675 34656035
view GAL 196 62 58 39 0 0 0.760 0.240 0.225 0.151 0.000 0.000 chr11 68679544 68696175
view GAMT 200 63 52 37 1 1 0.775 0.244 0.202 0.143 0.004 0.004 chr19 1392026 1406542
view GANAB 153 32 86 55 0 0 0.593 0.124 0.333 0.213 0.000 0.000 chr11 62619829 62651613
view GANC 130 29 112 67 0 0 0.504 0.112 0.434 0.260 0.000 0.000 chr15 42268201 42358666
view GAN 191 70 49 25 0 0 0.740 0.271 0.190 0.097 0.000 0.000 chr16 81309962 81395809
view GAP43 175 53 51 35 0 0 0.678 0.205 0.198 0.136 0.000 0.000 chr3 115618510 115726483
view GAPDHS 213 78 40 22 0 0 0.826 0.302 0.155 0.085 0.000 0.000 chr19 35528456 35550319
view GAPDH 228 81 25 20 2 1 0.884 0.314 0.097 0.078 0.008 0.004 chr12 6529517 6543371
view GAPT 188 57 65 44 1 0 0.729 0.221 0.252 0.171 0.004 0.000 chr5 58486435 58502090
view GAPVD1 169 65 65 28 0 0 0.655 0.252 0.252 0.109 0.000 0.000 chr9 125256826 125372207
view GAR1 212 78 44 25 1 1 0.822 0.302 0.171 0.097 0.004 0.004 chr4 109810762 109829737
view GAREM1 95 22 107 53 0 0 0.368 0.085 0.415 0.205 0.000 0.000 chr18 32258522 32475882
view GAREM2 152 37 96 59 0 0 0.589 0.143 0.372 0.229 0.000 0.000 chr2 26168088 26194663
view GARIN1A 213 74 39 27 1 1 0.826 0.287 0.151 0.105 0.004 0.004 chr7 128667292 128692877
view GARIN1B 225 83 27 18 1 1 0.872 0.322 0.105 0.070 0.004 0.004 chr7 128710391 128736743
view GARIN2 165 53 78 44 0 0 0.640 0.205 0.302 0.171 0.000 0.000 chr14 67184440 67228940
view GARIN3 197 70 59 33 0 0 0.764 0.271 0.229 0.128 0.000 0.000 chr5 157156846 157171264
view GARIN4 234 89 23 15 0 0 0.907 0.345 0.089 0.058 0.000 0.000 chr1 212619474 212631775
view GARIN5A 206 65 45 34 0 0 0.798 0.252 0.174 0.132 0.000 0.000 chr19 50461788 50481848
view GARIN5B 177 49 71 47 0 0 0.686 0.190 0.275 0.182 0.000 0.000 chr19 55349908 55368260
view GARIN6 227 84 29 19 0 0 0.880 0.326 0.112 0.074 0.000 0.000 chr12 99642753 99655114
view GARNL3 149 49 83 45 0 0 0.578 0.190 0.322 0.174 0.000 0.000 chr9 127259774 127398660
view GARRE1 162 46 77 44 0 0 0.628 0.178 0.298 0.171 0.000 0.000 chr19 34249554 34360566
view GARS1 200 70 47 28 0 0 0.775 0.271 0.182 0.109 0.000 0.000 chr7 30589878 30639033
view GART 191 62 53 31 0 0 0.740 0.240 0.205 0.120 0.000 0.000 chr21 33498933 33547117
view GAS1 219 85 39 20 0 0 0.849 0.329 0.151 0.078 0.000 0.000 chr9 86939362 86952506
view GAS2L1 211 75 45 28 0 0 0.818 0.291 0.174 0.109 0.000 0.000 chr22 29301650 29317787
view GAS2L2 217 75 37 26 0 0 0.841 0.291 0.143 0.101 0.000 0.000 chr17 35739511 35758239
view GAS2L3 200 74 51 30 0 0 0.775 0.287 0.198 0.116 0.000 0.000 chr12 100568684 100633288
view GAS2 135 38 59 32 0 0 0.523 0.147 0.229 0.124 0.000 0.000 chr11 22661611 22818001
view GAS6 71 11 105 42 0 0 0.275 0.043 0.407 0.163 0.000 0.000 chr13 113815549 113869076
view GAS7 108 14 60 42 0 0 0.419 0.054 0.233 0.163 0.000 0.000 chr17 9905606 10203606
view GAS8 194 60 46 32 0 0 0.752 0.233 0.178 0.124 0.000 0.000 chr16 90017680 90049960
view GASK1A 170 47 66 42 0 0 0.659 0.182 0.256 0.163 0.000 0.000 chr3 42974311 43062715
view GASK1B 145 42 97 52 0 0 0.562 0.163 0.376 0.202 0.000 0.000 chr4 158119474 158178025
view GAST 197 67 57 35 0 0 0.764 0.260 0.221 0.136 0.000 0.000 chr17 41707331 41720969