Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
GABRD 181 48 62 42 0 0 0.702 0.186 0.240 0.163 0.000 0.000 chr1 2014345 2035758
GABRE 99 33 150 66 0 0 0.384 0.128 0.581 0.256 0.000 0.000 chrX 151948124 151979676
GABRG1 153 46 74 44 0 0 0.593 0.178 0.287 0.171 0.000 0.000 chr4 46030769 46129054
GABRG2 163 59 68 32 0 0 0.632 0.229 0.264 0.124 0.000 0.000 chr5 162062773 162160526
GABRG3 46 0 96 55 0 0 0.178 0.000 0.372 0.213 0.000 0.000 chr15 26966181 27546984
GABRP 180 49 67 47 0 0 0.698 0.190 0.260 0.182 0.000 0.000 chr5 170778725 170819047
GABRQ 83 23 167 76 0 0 0.322 0.089 0.647 0.295 0.000 0.000 chrX 152632895 152662542
GABRR1 12 4 123 68 0 0 0.047 0.016 0.477 0.264 0.000 0.000 chr6 89172504 89222358
GABRR2 182 53 56 39 0 0 0.705 0.205 0.217 0.151 0.000 0.000 chr6 89249464 89320299
GABRR3 190 62 44 27 0 0 0.736 0.240 0.171 0.105 0.000 0.000 chr3 97980102 98040315
GAD1 205 74 48 29 0 0 0.795 0.287 0.186 0.112 0.000 0.000 chr2 170811887 170866151
GAD2 146 40 90 50 0 0 0.566 0.155 0.349 0.194 0.000 0.000 chr10 26211774 26309558
GADD45A 201 70 56 34 1 1 0.779 0.271 0.217 0.132 0.004 0.004 chr1 67680201 67693334
GADD45B 229 81 27 22 0 0 0.888 0.314 0.105 0.085 0.000 0.000 chr19 2471127 2483257
GADD45GIP1 185 58 70 45 0 0 0.717 0.225 0.271 0.174 0.000 0.000 chr19 12948119 12962223
GADD45G 225 84 31 19 0 0 0.872 0.326 0.120 0.074 0.000 0.000 chr9 89600012 89611555
GADL1 140 50 73 33 0 0 0.543 0.194 0.283 0.128 0.000 0.000 chr3 30721197 30899661
GAGE10 88 28 164 76 1 0 0.341 0.109 0.636 0.295 0.004 0.000 chrX 49298646 49324841
GAGE12C 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chrX 49527177 49544538
GAGE12D 80 29 68 36 85 23 0.310 0.112 0.264 0.140 0.329 0.089 chrX 49536733 49554094
GAGE12E 71 22 70 29 107 44 0.275 0.085 0.271 0.112 0.415 0.171 chrX 49546289 49563645
GAGE12F 78 27 66 25 108 47 0.302 0.105 0.256 0.097 0.419 0.182 chrX 49555842 49573205
GAGE12G 83 25 72 39 95 33 0.322 0.097 0.279 0.151 0.368 0.128 chrX 49565400 49582754
GAGE12H 77 22 89 41 47 8 0.298 0.085 0.345 0.159 0.182 0.031 chrX 49574949 49592301
GAGE12J 54 18 143 63 2 1 0.209 0.070 0.554 0.244 0.008 0.004 chrX 49317037 49334384
GAGE13 26 6 96 31 2 1 0.101 0.023 0.372 0.120 0.008 0.004 chrX 49326582 49343949
GAGE1 94 25 152 69 1 0 0.364 0.097 0.589 0.267 0.004 0.000 chrX 49594020 49613538
GAGE2A 55 12 122 44 8 1 0.213 0.047 0.473 0.171 0.031 0.004 chrX 49584496 49601824
GAK 194 63 42 25 0 0 0.752 0.244 0.163 0.097 0.000 0.000 chr4 844277 937316
GAL3ST1 225 78 30 24 0 0 0.872 0.302 0.116 0.093 0.000 0.000 chr22 30549635 30579665
GAL3ST2 156 39 82 50 0 0 0.605 0.151 0.318 0.194 0.000 0.000 chr2 241771822 241809287
GAL3ST3 196 70 58 33 1 1 0.760 0.271 0.225 0.128 0.004 0.004 chr11 66035765 66054161
GAL3ST4 200 70 51 29 0 0 0.775 0.271 0.198 0.112 0.000 0.000 chr7 100154244 100173617
GALC 184 57 60 39 0 0 0.713 0.221 0.233 0.151 0.000 0.000 chr14 87928014 87998182
GALE 204 67 50 34 0 0 0.791 0.260 0.194 0.132 0.000 0.000 chr1 23790599 23805754
GALK1 225 79 28 21 1 1 0.872 0.306 0.109 0.081 0.004 0.004 chr17 75752894 75770192
GALK2 173 54 71 43 0 0 0.671 0.209 0.275 0.167 0.000 0.000 chr15 49165247 49336882
GALM 163 44 66 42 0 0 0.632 0.171 0.256 0.163 0.000 0.000 chr2 38661114 38739765
GALNS 201 58 35 26 0 0 0.779 0.225 0.136 0.101 0.000 0.000 chr16 88808734 88861947
GALNT10 117 21 86 61 0 0 0.453 0.081 0.333 0.236 0.000 0.000 chr5 154185733 154425984
GALNT11 141 38 84 46 0 0 0.547 0.147 0.326 0.178 0.000 0.000 chr7 152020674 152127340
GALNT12 187 57 53 36 0 0 0.725 0.221 0.205 0.140 0.000 0.000 chr9 98802670 98855081
GALNT13 106 20 81 54 0 0 0.411 0.078 0.314 0.209 0.000 0.000 chr2 153866922 154458979
GALNT14 112 23 77 47 0 0 0.434 0.089 0.298 0.182 0.000 0.000 chr2 30905467 31143440
GALNT15 193 62 49 31 0 0 0.748 0.240 0.190 0.120 0.000 0.000 chr3 16169680 16235165
GALNT16 152 37 68 44 0 0 0.589 0.143 0.264 0.171 0.000 0.000 chr14 69255158 69359466
GALNT17 38 3 106 53 0 0 0.147 0.012 0.411 0.205 0.000 0.000 chr7 71127144 71718599
GALNT18 129 30 55 34 0 0 0.500 0.116 0.213 0.132 0.000 0.000 chr11 11265877 11627005
GALNT1 154 42 84 51 0 0 0.597 0.163 0.326 0.198 0.000 0.000 chr18 35576740 35716834
GALNT2 161 45 49 35 0 0 0.624 0.174 0.190 0.136 0.000 0.000 chr1 230062238 230287122