Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
GCNT3 213 74 39 26 0 0 0.826 0.287 0.151 0.101 0.000 0.000 chr15 59606783 59627723
GCNT4 190 62 49 29 0 0 0.736 0.240 0.190 0.112 0.000 0.000 chr5 75020346 75057558
GCSAML 205 65 43 31 0 0 0.795 0.252 0.167 0.120 0.000 0.000 chr1 247544134 247582690
GCSAM 210 71 41 28 2 1 0.814 0.275 0.159 0.109 0.008 0.004 chr3 112115839 112138248
GCSH 176 61 76 41 0 0 0.682 0.236 0.295 0.159 0.000 0.000 chr16 81076945 81101395
GC 193 78 51 21 0 0 0.748 0.302 0.198 0.081 0.000 0.000 chr4 71736697 71789079
GDAP1L1 195 72 55 29 0 0 0.756 0.279 0.213 0.112 0.000 0.000 chr20 44242308 44285947
GDAP1 214 82 37 18 1 1 0.829 0.318 0.143 0.070 0.004 0.004 chr8 74345403 74371876
GDAP2 181 62 65 39 0 0 0.702 0.240 0.252 0.151 0.000 0.000 chr1 117858485 117934621
GDA 155 49 76 47 0 0 0.601 0.190 0.295 0.182 0.000 0.000 chr9 72144440 72257224
GDE1 198 71 54 31 1 1 0.767 0.275 0.209 0.120 0.004 0.004 chr16 19496693 19527098
GDF10 198 67 54 32 0 0 0.767 0.260 0.209 0.124 0.000 0.000 chr10 47295197 47318577
GDF11 182 65 68 33 0 0 0.705 0.252 0.264 0.128 0.000 0.000 chr12 55738122 55762264
GDF15 211 73 39 26 0 0 0.818 0.283 0.151 0.101 0.000 0.000 chr19 18381158 18394176
GDF1 189 61 59 36 0 0 0.733 0.236 0.229 0.140 0.000 0.000 chr19 18863545 18901158
GDF2 211 73 41 26 0 0 0.818 0.283 0.159 0.101 0.000 0.000 chr10 47317454 47332588
GDF3 233 88 24 16 0 0 0.903 0.341 0.093 0.062 0.000 0.000 chr12 7684784 7700775
GDF5 179 49 73 52 2 0 0.694 0.190 0.283 0.202 0.008 0.000 chr20 35428347 35443228
GDF6 183 59 65 38 0 0 0.709 0.229 0.252 0.147 0.000 0.000 chr8 96137333 96165806
GDF7 220 77 32 24 0 0 0.853 0.298 0.124 0.093 0.000 0.000 chr2 20662144 20684243
GDF9 231 91 26 13 0 0 0.895 0.353 0.101 0.050 0.000 0.000 chr5 132856185 132871469
GDI1 77 12 179 91 0 0 0.298 0.047 0.694 0.353 0.000 0.000 chrX 154432154 154448467
GDI2 198 76 50 23 0 0 0.767 0.295 0.194 0.089 0.000 0.000 chr10 5760223 5818434
GDNF 214 83 38 17 0 0 0.829 0.322 0.147 0.066 0.000 0.000 chr5 37807677 37845041
GDPD1 155 49 83 44 0 0 0.601 0.190 0.322 0.171 0.000 0.000 chr17 59215511 59280970
GDPD2 93 30 159 71 1 0 0.360 0.116 0.616 0.275 0.004 0.000 chrX 70418314 70438381
GDPD3 194 64 60 39 0 0 0.752 0.248 0.233 0.151 0.000 0.000 chr16 30099810 30118537
GDPD4 174 66 70 32 1 1 0.674 0.256 0.271 0.124 0.004 0.004 chr11 77211558 77306686
GDPD5 160 42 61 44 0 0 0.620 0.163 0.236 0.171 0.000 0.000 chr11 75429640 75530941
GDPGP1 218 78 39 26 0 0 0.845 0.302 0.151 0.101 0.000 0.000 chr15 90229209 90250811
GEMIN2 211 77 44 25 0 0 0.818 0.298 0.171 0.097 0.000 0.000 chr14 39109323 39141973
GEMIN4 216 79 38 24 0 0 0.837 0.306 0.147 0.093 0.000 0.000 chr17 739421 757264
GEMIN5 168 46 74 48 0 0 0.651 0.178 0.287 0.186 0.000 0.000 chr5 154882411 154943211
GEMIN6 205 73 50 31 1 0 0.795 0.283 0.194 0.120 0.004 0.000 chr2 38773210 38790002
GEMIN7 209 68 42 30 0 0 0.810 0.264 0.163 0.116 0.000 0.000 chr19 45074260 45096518
GEMIN8 72 15 178 85 0 0 0.279 0.058 0.690 0.329 0.000 0.000 chrX 14001726 14034892
GEM 205 70 48 32 0 0 0.795 0.271 0.186 0.124 0.000 0.000 chr8 94244253 94267319
GEN1 159 46 82 46 0 0 0.616 0.178 0.318 0.178 0.000 0.000 chr2 17749138 17793946
GET1 168 48 78 49 0 0 0.651 0.186 0.302 0.190 0.000 0.000 chr21 39375326 39402889
GET3 142 30 107 69 0 0 0.550 0.116 0.415 0.267 0.000 0.000 chr19 12732497 12753323
GET4 191 60 51 29 0 0 0.740 0.233 0.198 0.112 0.000 0.000 chr7 871554 901436
GFAP 211 70 40 29 0 0 0.818 0.271 0.155 0.112 0.000 0.000 chr17 44898159 44920500
GFER 212 72 43 30 0 0 0.822 0.279 0.167 0.116 0.000 0.000 chr16 1979193 1992749
GFI1B 237 87 19 16 0 0 0.919 0.337 0.074 0.062 0.000 0.000 chr9 132973694 132996687
GFI1 170 47 82 54 1 0 0.659 0.182 0.318 0.209 0.004 0.000 chr1 92468043 92491925
GFM1 185 65 61 34 0 0 0.717 0.252 0.236 0.132 0.000 0.000 chr3 158639527 158700581
GFM2 185 57 60 38 0 0 0.717 0.221 0.233 0.147 0.000 0.000 chr5 74716206 74772117
GFOD1 114 27 91 52 0 0 0.442 0.105 0.353 0.202 0.000 0.000 chr6 13352830 13492600
GFOD2 92 8 149 87 0 0 0.357 0.031 0.578 0.337 0.000 0.000 chr16 67669536 67724316
GFPT1 182 64 67 37 0 0 0.705 0.248 0.260 0.143 0.000 0.000 chr2 69314780 69392227