Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GATA1 70 13 184 89 1 0 0.271 0.050 0.713 0.345 0.004 0.000 chrX 48781590 48799311
view GATA2 216 73 36 29 4 1 0.837 0.283 0.140 0.112 0.016 0.004 chr3 128474427 128493530
view GATA2 214 73 38 28 1 0 0.829 0.283 0.147 0.109 0.004 0.000 chr3 128474427 128498201
view GATA3 184 58 62 37 0 0 0.713 0.225 0.240 0.143 0.000 0.000 chr10 8049688 8080198
view GATA4 169 42 59 40 0 0 0.655 0.163 0.229 0.155 0.000 0.000 chr8 11699202 11765002
view GATA5 190 51 59 45 0 0 0.736 0.198 0.229 0.174 0.000 0.000 chr20 62458497 62480995
view GATA6 142 35 98 60 0 0 0.550 0.136 0.380 0.233 0.000 0.000 chr18 22164589 22207528
view GATAD1 164 53 89 48 0 0 0.636 0.205 0.345 0.186 0.000 0.000 chr7 92442482 92465075
view GATAD2A 148 37 92 60 0 0 0.574 0.143 0.357 0.233 0.000 0.000 chr19 19400675 19513932
view GATAD2B 174 56 71 39 0 0 0.674 0.217 0.275 0.151 0.000 0.000 chr1 153799725 153927972
view GATB 159 52 78 38 0 0 0.616 0.202 0.302 0.147 0.000 0.000 chr4 151665504 151766007
view GATC 203 67 47 33 1 1 0.787 0.260 0.182 0.128 0.004 0.004 chr12 120441444 120468749
view GATD1 214 73 38 27 1 1 0.829 0.283 0.147 0.105 0.004 0.004 chr11 762222 782487
view GATD3 27 2 107 37 0 0 0.105 0.008 0.415 0.143 0.000 0.000 chr21 44128683 44150711
view GATM 147 31 107 71 0 0 0.570 0.120 0.415 0.275 0.000 0.000 chr15 45356124 45383544
view GBA1 196 62 60 41 0 0 0.760 0.240 0.233 0.159 0.000 0.000 chr1 155229452 155246249
view GBA2 209 80 47 23 0 0 0.810 0.310 0.182 0.089 0.000 0.000 chr9 35731866 35754228
view GBE1 151 50 75 44 1 1 0.585 0.194 0.291 0.171 0.004 0.004 chr3 81484703 81766645
view GBF1 164 53 65 33 0 0 0.636 0.205 0.252 0.128 0.000 0.000 chr10 102240532 102387896
view GBGT1 222 75 26 21 0 0 0.860 0.291 0.101 0.081 0.000 0.000 chr9 133147948 133168914
view GBP1 214 82 42 21 0 0 0.829 0.318 0.163 0.081 0.000 0.000 chr1 89047319 89070208
view GBP2 206 73 43 25 0 0 0.798 0.283 0.167 0.097 0.000 0.000 chr1 89101132 89131114
view GBP3 217 79 36 23 0 0 0.841 0.306 0.140 0.089 0.000 0.000 chr1 89001680 89027866
view GBP4 200 66 56 37 0 0 0.775 0.256 0.217 0.143 0.000 0.000 chr1 89176144 89203942
view GBP5 215 79 36 21 0 0 0.833 0.306 0.140 0.081 0.000 0.000 chr1 89251189 89277860
view GBP6 225 87 30 15 0 0 0.872 0.337 0.116 0.058 0.000 0.000 chr1 89359059 89393160
view GBP7 187 63 62 35 0 0 0.725 0.244 0.240 0.136 0.000 0.000 chr1 89126742 89181003
view GBX1 199 71 52 30 0 0 0.771 0.275 0.202 0.116 0.000 0.000 chr7 151143009 151172694
view GBX2 170 47 85 56 0 0 0.659 0.182 0.329 0.217 0.000 0.000 chr2 236160236 236173386
view GCAT 194 70 62 33 1 1 0.752 0.271 0.240 0.128 0.004 0.004 chr22 37802934 37821897
view GCA 182 59 65 36 0 0 0.705 0.229 0.252 0.140 0.000 0.000 chr2 162339132 162368123
view GCC1 192 58 63 44 0 0 0.744 0.225 0.244 0.171 0.000 0.000 chr7 127575628 127590596
view GCC2 137 36 105 63 0 0 0.531 0.140 0.407 0.244 0.000 0.000 chr2 108444206 108514415
view GCDH 186 54 71 51 0 0 0.721 0.209 0.275 0.198 0.000 0.000 chr19 12886160 12904999
view GCFC2 201 76 50 26 0 0 0.779 0.295 0.194 0.101 0.000 0.000 chr2 75657705 75715915
view GCGR 203 64 45 32 0 0 0.787 0.248 0.174 0.124 0.000 0.000 chr17 81799150 81819008
view GCG 217 81 38 23 2 0 0.841 0.314 0.147 0.089 0.008 0.000 chr2 162137882 162157247
view GCH1 172 49 59 39 0 0 0.667 0.190 0.229 0.151 0.000 0.000 chr14 54837017 54907826
view GCHFR 207 72 47 30 0 0 0.802 0.279 0.182 0.116 0.000 0.000 chr15 40759068 40772708
view GCKR 161 43 81 52 1 1 0.624 0.167 0.314 0.202 0.004 0.004 chr2 27491839 27528684
view GCK 195 73 44 24 0 0 0.756 0.283 0.171 0.093 0.000 0.000 chr7 44139275 44194439
view GCLC 212 80 36 23 0 0 0.822 0.310 0.140 0.089 0.000 0.000 chr6 53492341 53550101
view GCLM 190 60 63 41 0 0 0.736 0.233 0.244 0.159 0.000 0.000 chr1 93880199 93914430
view GCM1 205 75 48 26 1 1 0.795 0.291 0.186 0.101 0.004 0.004 chr6 53121961 53153841
view GCM2 212 77 43 25 0 0 0.822 0.298 0.167 0.097 0.000 0.000 chr6 10868223 10887041
view GCN1 155 48 85 49 0 0 0.601 0.186 0.329 0.190 0.000 0.000 chr12 120122202 120199715
view GCNA 69 17 176 77 0 0 0.267 0.066 0.682 0.298 0.000 0.000 chrX 71573437 71618583
view GCNT1 184 51 54 38 0 0 0.713 0.198 0.209 0.147 0.000 0.000 chr9 76454182 76512416
view GCNT2 161 49 52 33 0 0 0.624 0.190 0.202 0.128 0.000 0.000 chr6 10516351 10634368
view GCNT2 171 55 55 32 0 0 0.663 0.213 0.213 0.124 0.000 0.000 chr6 10550809 10634368