Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
GFPT2 205 70 36 26 0 0 0.795 0.271 0.140 0.101 0.000 0.000 chr5 180295698 180358336
GFRA1 106 26 85 47 0 0 0.411 0.101 0.329 0.182 0.000 0.000 chr10 116051925 116278206
GFRA2 160 45 63 40 0 0 0.620 0.174 0.244 0.155 0.000 0.000 chr8 21685398 21793875
GFRA3 187 63 63 35 0 0 0.725 0.244 0.244 0.136 0.000 0.000 chr5 138247380 138279621
GFRA4 224 82 31 21 2 1 0.868 0.318 0.120 0.081 0.008 0.004 chr20 3654248 3668399
GFRAL 192 66 55 32 0 0 0.744 0.256 0.213 0.124 0.000 0.000 chr6 55322469 55407493
GFUS 207 64 43 34 0 0 0.802 0.248 0.167 0.132 0.000 0.000 chr8 143607618 143622549
GFY 224 80 31 22 0 0 0.868 0.310 0.120 0.085 0.000 0.000 chr19 49420388 49433987
GGA1 184 56 64 41 0 0 0.713 0.217 0.248 0.159 0.000 0.000 chr22 37603834 37638564
GGA2 126 27 115 69 0 0 0.488 0.105 0.446 0.267 0.000 0.000 chr16 23458542 23515494
GGA3 181 45 64 48 0 0 0.702 0.174 0.248 0.186 0.000 0.000 chr17 75231599 75266606
GGACT 187 74 56 22 1 1 0.725 0.287 0.217 0.085 0.004 0.004 chr13 100525180 100593789
GGCT 221 81 35 22 1 1 0.857 0.314 0.136 0.085 0.004 0.004 chr7 30491621 30509829
GGCX 204 69 49 35 0 0 0.791 0.267 0.190 0.136 0.000 0.000 chr2 85539720 85566493
GGH 212 83 44 21 0 0 0.822 0.322 0.171 0.081 0.000 0.000 chr8 63010079 63043806
GGNBP2 178 63 67 36 0 0 0.690 0.244 0.260 0.140 0.000 0.000 chr17 36539919 36594848
GGN 195 70 54 28 1 1 0.756 0.271 0.209 0.109 0.004 0.004 chr19 38379267 38393034
GGPS1 195 66 56 34 1 1 0.756 0.256 0.217 0.132 0.004 0.004 chr1 235323570 235349532
GGT1 212 75 41 26 0 0 0.822 0.291 0.159 0.101 0.000 0.000 chr22 24598193 24633996
GGT5 209 69 42 29 0 0 0.810 0.267 0.163 0.112 0.000 0.000 chr22 24214660 24250082
GGT6 228 82 27 20 0 0 0.884 0.318 0.105 0.078 0.000 0.000 chr17 4551927 4565577
GGT7 176 56 68 38 0 0 0.682 0.217 0.264 0.147 0.000 0.000 chr20 34839720 34877856
GGTA1 168 56 78 41 0 0 0.651 0.217 0.302 0.159 0.000 0.000 chr9 121450040 121504844
GGTLC1 217 75 37 26 0 0 0.841 0.291 0.143 0.101 0.000 0.000 chr20 23980053 23993779
GGTLC2 205 62 45 35 0 0 0.795 0.240 0.174 0.136 0.000 0.000 chr22 22639614 22652898
GGTLC3 17 7 91 34 3 0 0.066 0.027 0.353 0.132 0.012 0.000 chr22 18511344 18523161
GH1 209 68 45 33 0 0 0.810 0.264 0.174 0.128 0.000 0.000 chr17 63912203 63923839
GH2 212 75 44 29 0 0 0.822 0.291 0.171 0.112 0.000 0.000 chr17 63875215 63886944
GHDC 186 58 69 45 0 0 0.721 0.225 0.267 0.174 0.000 0.000 chr17 42184087 42199494
GHITM 224 81 33 23 0 0 0.868 0.314 0.128 0.089 0.000 0.000 chr10 84134509 84158568
GHRHR 210 70 43 31 0 0 0.814 0.271 0.167 0.120 0.000 0.000 chr7 30958953 30984528
GHRH 203 68 47 30 1 1 0.787 0.264 0.182 0.116 0.004 0.004 chr20 37246086 37266814
GHRL 230 86 23 15 1 0 0.891 0.333 0.089 0.058 0.004 0.000 chr3 10280666 10297947
GHR 104 8 100 68 0 0 0.403 0.031 0.388 0.264 0.000 0.000 chr5 42418439 42726878
GHSR 222 80 33 24 3 1 0.860 0.310 0.128 0.093 0.012 0.004 chr3 172438291 172453456
GID4 153 34 87 56 0 0 0.593 0.132 0.337 0.217 0.000 0.000 chr17 18034408 18073405
GID8 221 79 33 23 0 0 0.857 0.306 0.128 0.089 0.000 0.000 chr20 62933147 62953475
GIGYF1 198 67 57 36 2 1 0.767 0.260 0.221 0.140 0.008 0.004 chr7 100674507 100699250
GIGYF2 187 65 54 30 0 0 0.725 0.252 0.209 0.116 0.000 0.000 chr2 232692331 232865605
GIMAP1 216 78 39 25 1 1 0.837 0.302 0.151 0.097 0.004 0.004 chr7 150711613 150729284
GIMAP2 227 91 30 13 0 0 0.880 0.353 0.116 0.050 0.000 0.000 chr7 150680706 150698641
GIMAP4 226 89 27 14 3 0 0.876 0.345 0.105 0.054 0.012 0.000 chr7 150562390 150578953
GIMAP5 210 74 45 28 1 1 0.814 0.287 0.174 0.109 0.004 0.004 chr7 150732418 150748646
GIMAP6 222 81 33 21 1 1 0.860 0.314 0.128 0.081 0.004 0.004 chr7 150620375 150637385
GIMAP7 232 92 25 13 1 0 0.899 0.357 0.097 0.050 0.004 0.000 chr7 150509872 150526073
GIMAP8 185 61 68 40 0 0 0.717 0.236 0.264 0.155 0.000 0.000 chr7 150445630 150484393
GIMD1 225 84 28 17 0 0 0.872 0.326 0.109 0.066 0.000 0.000 chr4 106352392 106373778
GIN1 160 57 82 37 0 0 0.620 0.221 0.318 0.143 0.000 0.000 chr5 103081000 103125138
GINM1 189 57 54 37 0 0 0.733 0.221 0.209 0.143 0.000 0.000 chr6 149561375 149596748
GINS1 179 46 65 47 0 0 0.694 0.178 0.252 0.182 0.000 0.000 chr20 25402673 25453563