Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GINS2 234 84 21 18 0 0 0.907 0.326 0.081 0.070 0.000 0.000 chr16 85671198 85693954
view GINS3 216 75 37 26 0 0 0.837 0.291 0.143 0.101 0.000 0.000 chr16 58387471 58411147
view GINS4 212 75 42 27 1 0 0.822 0.291 0.163 0.105 0.004 0.000 chr8 41524261 41550030
view GIPC1 221 77 31 23 0 0 0.857 0.298 0.120 0.089 0.000 0.000 chr19 14472762 14501127
view GIPC2 165 48 75 46 0 0 0.640 0.186 0.291 0.178 0.000 0.000 chr1 78040966 78143444
view GIPC3 214 71 40 30 0 0 0.829 0.275 0.155 0.116 0.000 0.000 chr19 3580478 3598541
view GIPR 207 71 40 25 1 1 0.802 0.275 0.155 0.097 0.004 0.004 chr19 45663221 45688722
view GIP 202 63 46 34 0 0 0.783 0.244 0.178 0.132 0.000 0.000 chr17 48953554 48973596
view GIT1 199 59 51 39 2 1 0.771 0.229 0.198 0.151 0.008 0.004 chr17 29568475 29594648
view GIT2 120 28 118 66 0 0 0.465 0.109 0.457 0.256 0.000 0.000 chr12 109924804 110001368
view GJA10 192 58 65 46 1 1 0.744 0.225 0.252 0.178 0.004 0.004 chr6 89889469 89901120
view GJA1 207 72 43 28 1 0 0.802 0.279 0.167 0.109 0.004 0.000 chr6 121430646 121454727
view GJA3 195 52 49 40 1 1 0.756 0.202 0.190 0.155 0.004 0.004 chr13 20133255 20166052
view GJA4 207 74 48 28 0 0 0.802 0.287 0.186 0.109 0.000 0.000 chr1 34787999 34800747
view GJA5 224 85 33 20 1 0 0.868 0.329 0.128 0.078 0.004 0.000 chr1 147751199 147765602
view GJA8 235 88 22 16 0 0 0.911 0.341 0.085 0.062 0.000 0.000 chr1 147897795 147914269
view GJA9 221 78 35 25 1 1 0.857 0.302 0.136 0.097 0.004 0.004 chr1 38869069 38886587
view GJB1 104 30 148 70 0 0 0.403 0.116 0.574 0.271 0.000 0.000 chrX 71218224 71230516
view GJB2 209 75 48 29 0 0 0.810 0.291 0.186 0.112 0.000 0.000 chr13 20182470 20197938
view GJB3 221 83 33 18 0 0 0.857 0.322 0.128 0.070 0.000 0.000 chr1 34776214 34791364
view GJB4 230 86 27 18 0 0 0.891 0.333 0.105 0.070 0.000 0.000 chr1 34754740 34767327
view GJB5 233 93 23 11 0 0 0.903 0.360 0.089 0.043 0.000 0.000 chr1 34750047 34763512
view GJB6 229 81 26 22 1 0 0.888 0.314 0.101 0.085 0.004 0.000 chr13 20216962 20237319
view GJB7 190 64 60 37 0 0 0.736 0.248 0.233 0.143 0.000 0.000 chr6 87277980 87334278
view GJC1 189 61 52 32 0 0 0.733 0.236 0.202 0.124 0.000 0.000 chr17 44793448 44835287
view GJC2 206 69 47 32 0 0 0.798 0.267 0.182 0.124 0.000 0.000 chr1 228144930 228164826
view GJC3 195 64 61 41 1 0 0.756 0.248 0.236 0.159 0.004 0.000 chr7 99918266 99934620
view GJD2 222 83 32 20 2 1 0.860 0.322 0.124 0.078 0.008 0.004 chr15 34746032 34759998
view GJD3 184 53 68 48 1 0 0.713 0.205 0.264 0.186 0.004 0.000 chr17 40355652 40369737
view GJD4 219 80 34 21 0 0 0.849 0.310 0.132 0.081 0.000 0.000 chr10 35600341 35613935
view GJE1 201 67 56 37 0 0 0.779 0.260 0.217 0.143 0.000 0.000 chr6 142127925 142140358
view GK2 200 66 56 38 0 0 0.775 0.256 0.217 0.147 0.000 0.000 chr4 79401361 79413228
view GK3 191 63 62 40 1 1 0.740 0.244 0.240 0.155 0.004 0.004 chr4 165272807 165284704
view GK5 135 23 90 64 0 0 0.523 0.089 0.349 0.248 0.000 0.000 chr3 142152527 142230585
view GKAP1 167 58 77 41 0 0 0.647 0.225 0.298 0.159 0.000 0.000 chr9 83734425 83822769
view GKN1 231 88 26 16 0 0 0.895 0.341 0.101 0.062 0.000 0.000 chr2 68969636 68985976
view GKN2 232 92 25 13 0 0 0.899 0.357 0.097 0.050 0.000 0.000 chr2 68940232 68957893
view GK 78 18 171 79 0 0 0.302 0.070 0.663 0.306 0.000 0.000 chrX 30648423 30736462
view GLA 94 28 162 75 0 0 0.364 0.109 0.628 0.291 0.000 0.000 chrX 101392803 101412925
view GLB1L2 206 66 36 25 0 0 0.798 0.256 0.140 0.097 0.000 0.000 chr11 134326988 134381324
view GLB1L3 210 71 36 25 0 0 0.814 0.275 0.140 0.097 0.000 0.000 chr11 134271379 134324564
view GLB1L 204 60 46 37 0 0 0.791 0.233 0.178 0.143 0.000 0.000 chr2 219231598 219250444
view GLB1 196 68 44 24 0 0 0.760 0.264 0.171 0.093 0.000 0.000 chr3 32991617 33102146
view GLCCI1 207 75 41 25 0 0 0.802 0.291 0.159 0.097 0.000 0.000 chr7 7963796 8094080
view GLCE 170 64 67 31 0 0 0.659 0.248 0.260 0.120 0.000 0.000 chr15 69155635 69277207
view GLDC 170 55 41 23 0 0 0.659 0.213 0.159 0.089 0.000 0.000 chr9 6527467 6650729
view GLDN 205 70 34 24 0 0 0.795 0.271 0.132 0.093 0.000 0.000 chr15 51336655 51413000
view GLE1 179 68 67 32 0 0 0.694 0.264 0.260 0.124 0.000 0.000 chr9 128499719 128547288
view GLG1 170 51 63 41 0 0 0.659 0.198 0.244 0.159 0.000 0.000 chr16 74442440 74612114
view GLI1 206 72 49 30 0 0 0.798 0.279 0.190 0.116 0.000 0.000 chr12 57454785 57477268