Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
GLI2 80 7 104 60 0 0 0.310 0.027 0.403 0.233 0.000 0.000 chr2 120730868 120997653
GLI3 78 8 97 56 0 0 0.302 0.031 0.376 0.217 0.000 0.000 chr7 41955949 42242209
GLI4 196 61 57 39 0 0 0.760 0.236 0.221 0.151 0.000 0.000 chr8 143262445 143281931
GLIPR1L1 184 61 66 38 0 0 0.713 0.236 0.256 0.147 0.000 0.000 chr12 75329670 75375560
GLIPR1L2 179 59 75 42 0 0 0.694 0.229 0.291 0.163 0.000 0.000 chr12 75386089 75437688
GLIPR1 180 58 71 44 0 0 0.698 0.225 0.275 0.171 0.000 0.000 chr12 75475755 75508863
GLIPR2 209 70 42 31 0 0 0.810 0.271 0.163 0.120 0.000 0.000 chr9 36131733 36168906
GLIS1 117 33 91 41 0 0 0.453 0.128 0.353 0.159 0.000 0.000 chr1 53501239 53744164
GLIS2 197 58 50 39 0 0 0.764 0.225 0.194 0.151 0.000 0.000 chr16 4311067 4344595
GLIS3 94 17 60 32 0 0 0.364 0.066 0.233 0.124 0.000 0.000 chr9 3819127 4305068
GLMN 99 11 141 85 0 0 0.384 0.043 0.547 0.329 0.000 0.000 chr1 92241402 92303987
GLMP 197 68 54 36 4 0 0.764 0.264 0.209 0.140 0.016 0.000 chr1 156287688 156300679
GLO1 204 69 46 30 0 0 0.791 0.267 0.178 0.116 0.000 0.000 chr6 38670925 38708145
GLOD4 209 74 46 28 0 0 0.810 0.287 0.178 0.109 0.000 0.000 chr17 754330 787280
GLOD5 71 19 177 78 0 0 0.275 0.074 0.686 0.302 0.000 0.000 chrX 48756747 48778648
GLP1R 218 77 31 19 0 0 0.845 0.298 0.120 0.074 0.000 0.000 chr6 39043781 39096303
GLP2R 189 50 46 37 0 0 0.733 0.194 0.178 0.143 0.000 0.000 chr17 9820924 9897099
GLRA1 141 38 84 50 0 0 0.547 0.147 0.326 0.194 0.000 0.000 chr5 151817513 151929851
GLRA2 51 3 191 96 0 0 0.198 0.012 0.740 0.372 0.000 0.000 chrX 14524536 14736812
GLRA3 147 37 69 49 0 0 0.570 0.143 0.267 0.190 0.000 0.000 chr4 174631920 174834247
GLRB 152 52 87 44 0 0 0.589 0.202 0.337 0.171 0.000 0.000 chr4 157071150 157177090
GLRX2 192 70 62 33 1 0 0.744 0.271 0.240 0.128 0.004 0.000 chr1 193091470 193110414
GLRX3 211 75 40 25 0 0 0.818 0.291 0.155 0.097 0.000 0.000 chr10 130131391 130184672
GLRX5 229 86 27 17 1 1 0.888 0.333 0.105 0.066 0.004 0.004 chr14 95530050 95549714
GLRX 209 66 47 37 0 0 0.810 0.256 0.182 0.143 0.000 0.000 chr5 95808849 95827726
GLS2 180 63 75 42 0 0 0.698 0.244 0.291 0.163 0.000 0.000 chr12 56465952 56493161
GLS 189 72 56 26 0 0 0.733 0.279 0.217 0.101 0.000 0.000 chr2 190875821 190970552
GLT1D1 159 41 56 35 0 0 0.616 0.159 0.217 0.136 0.000 0.000 chr12 128848478 128989968
GLT6D1 217 77 31 19 0 0 0.841 0.298 0.120 0.074 0.000 0.000 chr9 135618648 135644540
GLT8D1 196 64 60 39 0 0 0.760 0.248 0.233 0.151 0.000 0.000 chr3 52689486 52710791
GLT8D2 207 70 43 30 0 0 0.802 0.271 0.167 0.116 0.000 0.000 chr12 103983987 104055187
GLTPD2 229 85 26 18 2 1 0.888 0.329 0.101 0.070 0.008 0.004 chr17 4783964 4795589
GLTP 160 50 79 43 0 0 0.620 0.194 0.306 0.167 0.000 0.000 chr12 109845945 109885541
GLUD1 166 49 77 43 0 0 0.643 0.190 0.298 0.167 0.000 0.000 chr10 87045202 87099843
GLUD2 95 29 157 73 2 0 0.368 0.112 0.609 0.283 0.008 0.000 chrX 121042610 121055094
GLUL 199 67 52 32 1 1 0.771 0.260 0.202 0.124 0.004 0.004 chr1 182373098 182396790
GLYATL1B 217 82 29 20 12 3 0.841 0.318 0.112 0.078 0.047 0.012 chr11 59081307 59099786
GLYATL1 211 78 42 24 0 0 0.818 0.302 0.163 0.093 0.000 0.000 chr11 58934488 58961406
GLYATL2 189 66 61 32 1 1 0.733 0.256 0.236 0.124 0.004 0.004 chr11 58829065 58849704
GLYATL3 189 63 59 33 0 0 0.733 0.244 0.229 0.128 0.000 0.000 chr6 49494923 49533078
GLYAT 181 62 69 37 0 0 0.702 0.240 0.267 0.143 0.000 0.000 chr11 58703757 58736943
GLYCTK 182 57 73 47 1 0 0.705 0.221 0.283 0.182 0.004 0.000 chr3 52282828 52300257
GLYR1 175 48 71 47 0 0 0.678 0.186 0.275 0.182 0.000 0.000 chr16 4798203 4852288
GM2A 205 75 52 29 0 0 0.795 0.291 0.202 0.112 0.000 0.000 chr5 151248185 151275440
GMCL1 194 71 55 26 0 0 0.752 0.275 0.213 0.101 0.000 0.000 chr2 69824660 69886384
GMCL2 225 77 30 25 0 0 0.872 0.298 0.116 0.097 0.000 0.000 chr5 178179505 178192371
GMDS 82 18 73 37 0 0 0.318 0.070 0.283 0.143 0.000 0.000 chr6 1618806 2250605
GMEB1 144 31 98 62 0 0 0.558 0.120 0.380 0.240 0.000 0.000 chr1 28663784 28724353
GMEB2 164 43 80 52 0 0 0.636 0.167 0.310 0.202 0.000 0.000 chr20 63582605 63632101
GMFB 176 64 74 35 0 0 0.682 0.248 0.287 0.136 0.000 0.000 chr14 54469485 54493980