Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GMFG 186 64 60 32 0 0 0.721 0.248 0.233 0.124 0.000 0.000 chr19 39323359 39341043
view GMIP 207 64 43 33 0 0 0.802 0.248 0.167 0.128 0.000 0.000 chr19 19624476 19648657
view GML 210 79 46 25 0 0 0.814 0.306 0.178 0.097 0.000 0.000 chr8 142829801 142851851
view GMNC 243 94 12 8 1 1 0.942 0.364 0.047 0.031 0.004 0.004 chr3 190847737 190867694
view GMNN 205 71 50 31 0 0 0.795 0.275 0.194 0.120 0.000 0.000 chr6 24769937 24791099
view GMPPA 190 55 61 43 0 0 0.736 0.213 0.236 0.167 0.000 0.000 chr2 219493891 219511989
view GMPPB 162 52 91 49 1 0 0.628 0.202 0.353 0.190 0.004 0.000 chr3 49714916 49728951
view GMPR2 209 75 48 29 0 0 0.810 0.291 0.186 0.112 0.000 0.000 chr14 24227929 24244242
view GMPR 171 49 68 41 0 0 0.663 0.190 0.264 0.159 0.000 0.000 chr6 16233587 16300549
view GMPS 189 57 65 44 0 0 0.733 0.221 0.252 0.171 0.000 0.000 chr3 155865650 155949020
view GNA11 212 70 40 30 0 0 0.822 0.271 0.155 0.116 0.000 0.000 chr19 3089362 3128999
view GNA12 160 48 68 40 0 0 0.620 0.186 0.264 0.155 0.000 0.000 chr7 2723105 2849308
view GNA13 89 11 133 70 0 0 0.345 0.043 0.516 0.271 0.000 0.000 chr17 65004289 65061740
view GNA14 119 25 79 42 0 0 0.461 0.097 0.306 0.163 0.000 0.000 chr9 77418079 77653322
view GNA15 224 77 27 23 0 0 0.868 0.298 0.105 0.089 0.000 0.000 chr19 3131033 3168749
view GNAI1 155 33 78 58 0 0 0.601 0.128 0.302 0.225 0.000 0.000 chr7 80129831 80231181
view GNAI2 164 50 79 43 1 1 0.636 0.194 0.306 0.167 0.004 0.004 chr3 50231204 50264362
view GNAI3 154 50 82 42 0 0 0.597 0.194 0.318 0.163 0.000 0.000 chr1 109543615 109605195
view GNAL 123 26 76 44 0 0 0.477 0.101 0.295 0.171 0.000 0.000 chr18 11684264 11890685
view GNAL 141 37 74 41 0 0 0.547 0.143 0.287 0.159 0.000 0.000 chr18 11747085 11890685
view GNAO1 148 44 68 39 0 0 0.574 0.171 0.264 0.151 0.000 0.000 chr16 56186489 56362444
view GNAQ 140 42 77 42 0 0 0.543 0.163 0.298 0.163 0.000 0.000 chr9 77711097 78036811
view GNAS 150 34 87 58 0 0 0.581 0.132 0.337 0.225 0.000 0.000 chr20 58834748 58916192
view GNAS 150 36 83 50 0 0 0.581 0.140 0.322 0.194 0.000 0.000 chr20 58847716 58916192
view GNAS 215 79 38 21 0 0 0.833 0.306 0.147 0.081 0.000 0.000 chr20 58886421 58916192
view GNAT1 182 60 70 40 0 0 0.705 0.233 0.271 0.155 0.000 0.000 chr3 50186610 50202696
view GNAT2 171 55 84 49 0 0 0.663 0.213 0.326 0.190 0.000 0.000 chr1 109598091 109624616
view GNAT3 166 48 69 43 0 0 0.643 0.186 0.267 0.167 0.000 0.000 chr7 80453635 80517064
view GNAZ 166 47 75 48 0 0 0.643 0.182 0.291 0.186 0.000 0.000 chr22 23065519 23130032
view GNB1L 162 47 63 34 0 0 0.628 0.182 0.244 0.132 0.000 0.000 chr22 19778223 19859874
view GNB1 167 53 63 37 0 0 0.647 0.205 0.244 0.143 0.000 0.000 chr1 1780286 1896087
view GNB2 186 57 70 46 1 1 0.721 0.221 0.271 0.178 0.004 0.004 chr7 100668740 100684169
view GNB3 210 72 47 32 0 0 0.814 0.279 0.182 0.124 0.000 0.000 chr12 6835925 6852393
view GNB4 199 66 52 33 0 0 0.771 0.256 0.202 0.128 0.000 0.000 chr3 179391088 179456470
view GNB5 182 57 52 32 0 0 0.705 0.221 0.202 0.124 0.000 0.000 chr15 52110100 52196392
view GNE 186 57 59 38 0 0 0.721 0.221 0.229 0.147 0.000 0.000 chr9 36209441 36263448
view GNE 177 52 68 42 0 0 0.686 0.202 0.264 0.163 0.000 0.000 chr9 36209441 36281978
view GNG10 214 70 43 34 0 0 0.829 0.271 0.167 0.132 0.000 0.000 chr9 111656605 111675226
view GNG11 218 75 37 28 1 1 0.845 0.291 0.143 0.109 0.004 0.004 chr7 93916735 93933610
view GNG12 136 42 90 48 0 0 0.527 0.163 0.349 0.186 0.000 0.000 chr1 67696475 67838467
view GNG13 210 70 40 28 2 1 0.814 0.271 0.155 0.109 0.008 0.004 chr16 793041 805734
view GNG14 184 56 61 39 0 0 0.713 0.217 0.236 0.151 0.000 0.000 chr19 12682998 12693422
view GNG2 189 68 39 20 0 0 0.733 0.264 0.151 0.078 0.000 0.000 chr14 51855612 51974795
view GNG3 180 62 74 41 0 0 0.698 0.240 0.287 0.159 0.000 0.000 chr11 62702676 62714201
view GNG4 164 37 61 46 0 0 0.636 0.143 0.236 0.178 0.000 0.000 chr1 235542685 235654784
view GNG5B 52 13 204 90 0 0 0.202 0.050 0.791 0.349 0.000 0.000 chrX 110341454 110351973
view GNG5 182 59 73 44 0 0 0.705 0.229 0.283 0.171 0.000 0.000 chr1 84493325 84511581
view GNG7 102 15 70 29 0 0 0.395 0.058 0.271 0.112 0.000 0.000 chr19 2506219 2707694
view GNG8 218 78 33 20 0 0 0.845 0.302 0.128 0.078 0.000 0.000 chr19 46628953 46641202
view GNGT1 214 74 41 29 0 0 0.829 0.287 0.159 0.112 0.000 0.000 chr7 93901567 93916265