Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
GSDME 204 75 40 20 0 0 0.791 0.291 0.155 0.078 0.000 0.000 chr7 24693355 24762464
GSE1 144 22 64 40 0 0 0.558 0.085 0.248 0.155 0.000 0.000 chr16 85608322 85681200
GSG1L2 236 88 17 13 1 1 0.915 0.341 0.066 0.050 0.004 0.004 chr17 9795608 9827079
GSG1L 119 20 65 47 0 0 0.461 0.078 0.252 0.182 0.000 0.000 chr16 27782528 28068714
GSG1 223 82 29 17 0 0 0.864 0.318 0.112 0.066 0.000 0.000 chr12 13078532 13108667
GSK3A 111 29 130 63 0 0 0.430 0.112 0.504 0.244 0.000 0.000 chr19 42225190 42247602
GSK3B 149 52 80 41 0 0 0.578 0.202 0.310 0.159 0.000 0.000 chr3 119816321 120099447
GSKIP 203 73 52 29 0 0 0.787 0.283 0.202 0.112 0.000 0.000 chr14 96358526 96392288
GSN 160 47 77 47 0 0 0.620 0.182 0.298 0.182 0.000 0.000 chr9 121263162 121337842
GSPT1 185 57 54 35 0 0 0.717 0.221 0.209 0.136 0.000 0.000 chr16 11863128 11920956
GSPT2 92 31 163 72 0 0 0.357 0.120 0.632 0.279 0.000 0.000 chrX 51738442 51751232
GSR 173 52 67 40 0 0 0.671 0.202 0.260 0.155 0.000 0.000 chr8 30673066 30732846
GSS 175 60 70 39 0 0 0.678 0.233 0.271 0.151 0.000 0.000 chr20 34923432 34960806
GSTA1 217 78 36 23 0 0 0.841 0.302 0.140 0.089 0.000 0.000 chr6 52786371 52808816
GSTA2 219 78 37 25 0 0 0.849 0.302 0.143 0.097 0.000 0.000 chr6 52745087 52768475
GSTA3 210 79 47 25 0 0 0.814 0.306 0.182 0.097 0.000 0.000 chr6 52891646 52914698
GSTA4 161 47 94 57 0 0 0.624 0.182 0.364 0.221 0.000 0.000 chr6 52972953 53000284
GSTA5 214 74 41 29 1 1 0.829 0.287 0.159 0.112 0.004 0.004 chr6 52826848 52845813
GSTCD 92 14 143 84 0 0 0.357 0.054 0.554 0.326 0.000 0.000 chr4 105703784 105852725
GSTK1 190 61 63 39 0 0 0.736 0.236 0.244 0.151 0.000 0.000 chr7 143258441 143274115
GSTM1 154 41 85 47 0 0 0.597 0.159 0.329 0.182 0.000 0.000 chr1 109682817 109698745
GSTM2 177 52 71 46 0 0 0.686 0.202 0.275 0.178 0.000 0.000 chr1 109663057 109680286
GSTM3 199 71 56 31 0 0 0.771 0.275 0.217 0.120 0.000 0.000 chr1 109728937 109746038
GSTM4 181 51 69 47 0 0 0.702 0.198 0.267 0.182 0.000 0.000 chr1 109651099 109666700
GSTM5 196 60 59 43 0 0 0.760 0.233 0.229 0.167 0.000 0.000 chr1 109707251 109723268
GSTO1 188 69 66 33 0 0 0.729 0.267 0.256 0.128 0.000 0.000 chr10 104249892 104272455
GSTO2 149 43 93 51 0 0 0.578 0.167 0.360 0.198 0.000 0.000 chr10 104264184 104309950
GSTP1 195 60 62 45 1 0 0.756 0.233 0.240 0.174 0.004 0.000 chr11 67578812 67591653
GSTT2B 59 19 135 52 3 1 0.229 0.074 0.523 0.202 0.012 0.004 chr22 23952414 23966195
GSTT4 80 36 136 55 0 0 0.310 0.140 0.527 0.213 0.000 0.000 chr22 23993401 24010453
GSTZ1 216 79 38 22 0 0 0.837 0.306 0.147 0.085 0.000 0.000 chr14 77316036 77336597
GSX1 220 76 34 26 1 0 0.853 0.295 0.132 0.101 0.004 0.000 chr13 27787483 27799768
GSX2 185 58 71 46 0 0 0.717 0.225 0.275 0.178 0.000 0.000 chr4 54095163 54107498
GTDC1 61 10 121 74 0 0 0.236 0.039 0.469 0.287 0.000 0.000 chr2 143933068 144337512
GTF2A1L 171 46 67 48 0 0 0.663 0.178 0.260 0.186 0.000 0.000 chr2 48612856 48684604
GTF2A1 174 54 70 42 0 0 0.674 0.209 0.271 0.163 0.000 0.000 chr14 81170452 81225959
GTF2A2 217 74 37 27 0 0 0.841 0.287 0.143 0.105 0.000 0.000 chr15 59633062 59662515
GTF2B 185 60 63 38 0 0 0.717 0.233 0.244 0.147 0.000 0.000 chr1 88847633 88896567
GTF2E1 187 64 61 35 0 0 0.725 0.248 0.236 0.136 0.000 0.000 chr3 120737744 120788069
GTF2E2 188 70 58 31 0 0 0.729 0.271 0.225 0.120 0.000 0.000 chr8 30573318 30663236
GTF2F1 188 65 60 31 0 0 0.729 0.252 0.233 0.120 0.000 0.000 chr19 6374572 6398164
GTF2F2 104 23 124 69 0 0 0.403 0.089 0.481 0.267 0.000 0.000 chr13 45115510 45289893
GTF2H1 184 61 59 33 0 0 0.713 0.236 0.229 0.128 0.000 0.000 chr11 18317567 18372045
GTF2H2C 83 16 131 61 1 0 0.322 0.062 0.508 0.236 0.004 0.000 chr5 69555191 69600221
GTF2H2 39 5 106 30 1 0 0.151 0.019 0.411 0.116 0.004 0.000 chr5 71030347 71072676
GTF2H3 135 21 106 71 0 0 0.523 0.081 0.411 0.275 0.000 0.000 chr12 123628829 123667604
GTF2H4 205 71 45 29 1 0 0.795 0.275 0.174 0.112 0.004 0.000 chr6 30903207 30919106
GTF2H5 191 60 57 36 0 0 0.740 0.233 0.221 0.140 0.000 0.000 chr6 158163350 158204344
GTF2IRD1 130 32 76 47 0 0 0.504 0.124 0.295 0.182 0.000 0.000 chr7 74448906 74607605
GTF2IRD2B 84 11 134 73 0 0 0.326 0.043 0.519 0.283 0.000 0.000 chr7 75087590 75154817