Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GTF2IRD2 3 0 24 1 0 0 0.012 0.000 0.093 0.004 0.000 0.000 chr7 74791151 74856605
view GTF2I 86 12 131 69 0 0 0.333 0.047 0.508 0.267 0.000 0.000 chr7 74652718 74765692
view GTF3A 209 73 47 30 0 0 0.810 0.283 0.182 0.116 0.000 0.000 chr13 27419619 27440823
view GTF3C1 109 26 119 69 0 0 0.422 0.101 0.461 0.267 0.000 0.000 chr16 27455613 27554913
view GTF3C2 142 35 100 59 0 0 0.550 0.136 0.388 0.229 0.000 0.000 chr2 27320854 27361764
view GTF3C3 125 26 111 69 0 0 0.484 0.101 0.430 0.267 0.000 0.000 chr2 196758035 196804683
view GTF3C4 213 76 43 27 0 0 0.826 0.295 0.167 0.105 0.000 0.000 chr9 132665464 132699953
view GTF3C5 189 59 57 37 0 0 0.733 0.229 0.221 0.143 0.000 0.000 chr9 133025997 133063503
view GTF3C6 172 48 76 48 0 0 0.667 0.186 0.295 0.186 0.000 0.000 chr6 110953706 110972872
view GTPBP10 194 59 50 34 0 0 0.752 0.229 0.194 0.132 0.000 0.000 chr7 90341716 90396453
view GTPBP1 190 69 60 32 0 0 0.736 0.267 0.233 0.124 0.000 0.000 chr22 38700944 38738587
view GTPBP2 190 62 63 41 1 0 0.736 0.240 0.244 0.159 0.004 0.000 chr6 43615494 43634264
view GTPBP3 203 63 52 39 0 0 0.787 0.244 0.202 0.151 0.000 0.000 chr19 17332553 17347731
view GTPBP4 184 57 66 41 0 0 0.713 0.221 0.256 0.159 0.000 0.000 chr10 983434 1024932
view GTPBP6 113 46 112 42 0 0 0.438 0.178 0.434 0.163 0.000 0.000 chrX 299759 323796
view GTPBP8 225 90 33 15 0 0 0.872 0.349 0.128 0.058 0.000 0.000 chr3 112985984 113006969
view GTSE1 99 14 137 75 0 0 0.384 0.054 0.531 0.291 0.000 0.000 chr22 46291870 46335810
view GTSF1L 210 77 43 24 1 0 0.814 0.298 0.167 0.093 0.004 0.000 chr20 43721164 43732002
view GTSF1 179 53 74 49 0 0 0.694 0.205 0.287 0.190 0.000 0.000 chr12 54450957 54478602
view GUCA1ANB 224 73 32 30 0 0 0.868 0.283 0.124 0.116 0.000 0.000 chr6 42150406 42168418
view GUCA1A 205 70 43 25 0 0 0.795 0.271 0.167 0.097 0.000 0.000 chr6 42168364 42185056
view GUCA1B 208 73 47 30 0 0 0.806 0.283 0.182 0.116 0.000 0.000 chr6 42178284 42199956
view GUCA1C 186 53 60 42 0 0 0.721 0.205 0.233 0.163 0.000 0.000 chr3 108902792 108958879
view GUCA2A 217 77 40 27 0 0 0.841 0.298 0.155 0.105 0.000 0.000 chr1 42157690 42169745
view GUCA2B 220 83 37 21 1 1 0.853 0.322 0.143 0.081 0.004 0.004 chr1 42148410 42160820
view GUCD1 206 70 46 30 0 0 0.798 0.271 0.178 0.116 0.000 0.000 chr22 24535438 24560138
view GUCY1A1 164 42 68 45 0 0 0.636 0.163 0.264 0.174 0.000 0.000 chr4 155661848 155742059
view GUCY1A2 127 27 66 43 0 0 0.492 0.105 0.256 0.167 0.000 0.000 chr11 106669019 107023476
view GUCY1B1 181 50 62 42 0 0 0.702 0.194 0.240 0.163 0.000 0.000 chr4 155754021 155812811
view GUCY2C 117 25 107 64 0 0 0.453 0.097 0.415 0.248 0.000 0.000 chr12 14607632 14701599
view GUCY2D 215 77 36 21 0 0 0.833 0.298 0.140 0.081 0.000 0.000 chr17 7997615 8025342
view GUCY2F 44 6 195 93 0 0 0.171 0.023 0.756 0.360 0.000 0.000 chrX 109367906 109487086
view GUF1 194 69 60 33 0 0 0.752 0.267 0.233 0.128 0.000 0.000 chr4 44673420 44705928
view GUK1 210 71 45 31 0 0 0.814 0.275 0.174 0.120 0.000 0.000 chr1 228135279 228153951
view GULP1 80 10 134 75 0 0 0.310 0.039 0.519 0.291 0.000 0.000 chr2 188286874 188600926
view GUSB 208 77 46 25 0 0 0.806 0.298 0.178 0.097 0.000 0.000 chr7 65955684 65987213
view GVQW3 190 72 61 29 0 0 0.736 0.279 0.236 0.112 0.000 0.000 chr11 76376323 76413132
view GXYLT1 198 73 51 25 0 0 0.767 0.283 0.198 0.097 0.000 0.000 chr12 42076845 42149874
view GXYLT2 147 30 76 49 0 0 0.570 0.116 0.295 0.190 0.000 0.000 chr3 72883046 72981915
view GYG1 206 71 45 30 0 0 0.798 0.275 0.174 0.116 0.000 0.000 chr3 148986540 149036775
view GYG2 98 29 143 62 0 0 0.380 0.112 0.554 0.240 0.000 0.000 chrX 2823930 2887818
view GYPA 215 74 32 22 1 1 0.833 0.287 0.124 0.085 0.004 0.004 chr4 144104303 144145718
view GYPB 216 80 33 20 0 0 0.837 0.310 0.128 0.078 0.000 0.000 chr4 143991104 144024380
view GYPC 207 66 38 26 0 0 0.802 0.256 0.147 0.101 0.000 0.000 chr2 126651158 126701667
view GYPE 198 64 48 31 0 0 0.767 0.248 0.186 0.120 0.000 0.000 chr4 143865864 143910559
view GYS1 194 58 52 37 0 0 0.752 0.225 0.202 0.143 0.000 0.000 chr19 48963130 48998309
view GYS2 155 42 74 49 0 0 0.601 0.163 0.287 0.190 0.000 0.000 chr12 21531107 21609847
view GZF1 213 86 40 17 0 0 0.826 0.333 0.155 0.066 0.000 0.000 chr20 23357182 23378062
view GZMA 194 74 60 28 0 0 0.752 0.287 0.233 0.109 0.000 0.000 chr5 55097646 55115252
view GZMB 224 85 34 20 0 0 0.868 0.329 0.132 0.078 0.000 0.000 chr14 24625954 24639190