Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view HABP4 152 41 77 47 0 0 0.589 0.159 0.298 0.182 0.000 0.000 chr9 96445169 96496336
view HACD1 204 70 44 26 0 0 0.791 0.271 0.171 0.101 0.000 0.000 chr10 17584032 17622374
view HACD2 174 60 64 33 0 0 0.674 0.233 0.248 0.128 0.000 0.000 chr3 123486554 123590053
view HACD3 163 47 87 53 0 0 0.632 0.182 0.337 0.205 0.000 0.000 chr15 65525463 65583349
view HACD4 216 85 35 16 0 0 0.837 0.329 0.136 0.062 0.000 0.000 chr9 20994509 21036640
view HACE1 172 56 66 37 0 0 0.667 0.217 0.256 0.143 0.000 0.000 chr6 104723094 104864919
view HACL1 213 76 35 23 0 0 0.826 0.295 0.136 0.089 0.000 0.000 chr3 15555699 15606569
view HADHA 136 37 105 58 0 0 0.527 0.143 0.407 0.225 0.000 0.000 chr2 26185635 26249632
view HADHB 144 36 102 62 0 0 0.558 0.140 0.395 0.240 0.000 0.000 chr2 26239939 26295465
view HADH 151 34 93 60 0 0 0.585 0.132 0.360 0.233 0.000 0.000 chr4 107984889 108040171
view HAGHL 198 57 54 42 0 0 0.767 0.221 0.209 0.163 0.000 0.000 chr16 722106 734715
view HAGH 217 78 37 24 1 0 0.841 0.302 0.143 0.093 0.004 0.000 chr16 1802629 1831825
view HAL 208 73 43 26 0 0 0.806 0.283 0.167 0.101 0.000 0.000 chr12 95967662 96001344
view HAMP 223 78 32 24 1 1 0.864 0.302 0.124 0.093 0.004 0.004 chr19 35277528 35290143
view HAND1 222 80 34 23 1 1 0.860 0.310 0.132 0.089 0.004 0.004 chr5 154469972 154483227
view HAND2 229 85 28 19 1 1 0.888 0.329 0.109 0.074 0.004 0.004 chr4 173521091 173535229
view HAO1 173 47 64 44 0 0 0.671 0.182 0.248 0.171 0.000 0.000 chr20 7877985 7945458
view HAO2 213 74 39 26 1 1 0.826 0.287 0.151 0.101 0.004 0.004 chr1 119363785 119399130
view HAP1 186 52 62 43 1 1 0.721 0.202 0.240 0.167 0.004 0.004 chr17 41717640 41739643
view HAPLN1 185 66 60 32 0 0 0.717 0.256 0.233 0.124 0.000 0.000 chr5 83632805 83725855
view HAPLN2 208 68 47 34 0 0 0.806 0.264 0.182 0.132 0.000 0.000 chr1 156614415 156630725
view HAPLN3 217 78 36 22 0 0 0.841 0.302 0.140 0.085 0.000 0.000 chr15 88872294 88900544
view HAPLN4 199 62 53 37 0 0 0.771 0.240 0.205 0.143 0.000 0.000 chr19 19249756 19267804
view HAPSTR1 198 70 53 31 0 0 0.767 0.271 0.205 0.120 0.000 0.000 chr16 9086644 9126635
view HAPSTR2 93 27 161 77 0 0 0.360 0.105 0.624 0.298 0.000 0.000 chrX 140086678 140097911
view HARBI1 128 28 123 73 0 0 0.496 0.109 0.477 0.283 0.000 0.000 chr11 46597861 46622227
view HARS1 191 68 60 32 0 0 0.740 0.264 0.233 0.124 0.000 0.000 chr5 140668905 140696370
view HARS2 191 67 64 35 0 0 0.740 0.260 0.248 0.136 0.000 0.000 chr5 140686455 140704305
view HAS1 231 84 25 20 1 0 0.895 0.326 0.097 0.078 0.004 0.000 chr19 51708112 51728991
view HAS2 187 63 60 35 0 0 0.725 0.244 0.233 0.136 0.000 0.000 chr8 121607116 121646440
view HAS3 204 68 49 32 0 0 0.791 0.264 0.190 0.124 0.000 0.000 chr16 69100653 69122660
view HASPIN 206 69 47 32 0 0 0.798 0.267 0.182 0.124 0.000 0.000 chr17 3718903 3731699
view HAT1 162 55 82 45 0 0 0.628 0.213 0.318 0.174 0.000 0.000 chr2 171917461 171988686
view HAUS1 185 60 59 34 0 0 0.717 0.233 0.229 0.132 0.000 0.000 chr18 46099385 46133333
view HAUS2 174 43 70 48 0 0 0.674 0.167 0.271 0.186 0.000 0.000 chr15 42543838 42574994
view HAUS3 164 55 88 46 0 0 0.636 0.213 0.341 0.178 0.000 0.000 chr4 2223349 2247121
view HAUS4 158 36 94 63 0 0 0.612 0.140 0.364 0.244 0.000 0.000 chr14 22941228 22962090
view HAUS5 214 74 41 30 0 0 0.829 0.287 0.159 0.116 0.000 0.000 chr19 35607735 35630355
view HAUS6 202 70 52 33 0 0 0.783 0.271 0.202 0.128 0.000 0.000 chr9 19048141 19107904
view HAUS7 97 31 153 67 0 0 0.376 0.120 0.593 0.260 0.000 0.000 chrX 153442668 153475576
view HAUS8 199 68 46 29 0 0 0.771 0.264 0.178 0.112 0.000 0.000 chr19 17044729 17080452
view HAVCR1 175 48 62 41 1 1 0.678 0.186 0.240 0.159 0.004 0.004 chr5 157024413 157064116
view HAVCR2 189 66 60 33 0 0 0.733 0.256 0.233 0.128 0.000 0.000 chr5 157080832 157114044
view HAX1 195 65 57 36 1 1 0.756 0.252 0.221 0.140 0.004 0.004 chr1 154267629 154280875
view HBA1 198 69 53 32 0 0 0.767 0.267 0.205 0.124 0.000 0.000 chr16 171680 182522
view HBA2 192 68 53 30 0 0 0.744 0.264 0.205 0.116 0.000 0.000 chr16 167876 178710
view HBB 243 92 15 13 0 0 0.942 0.357 0.058 0.050 0.000 0.000 chr11 5220464 5232071
view HBD 229 81 28 23 0 0 0.888 0.314 0.109 0.089 0.000 0.000 chr11 5227838 5239483
view HBE1 207 69 50 36 1 0 0.802 0.267 0.194 0.140 0.004 0.000 chr11 5263345 5274945
view HBEGF 213 75 43 28 1 1 0.826 0.291 0.167 0.109 0.004 0.004 chr5 140327843 140351603