Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
H2BC26 223 85 31 17 1 1 0.864 0.329 0.120 0.066 0.004 0.004 chr1 228453103 228463558
H2BC3 209 70 43 32 2 1 0.810 0.271 0.167 0.124 0.008 0.004 chr6 26038227 26048713
H2BC4 200 60 54 42 1 0 0.775 0.233 0.209 0.163 0.004 0.000 chr6 26118467 26128926
H2BC5 189 51 64 51 2 0 0.733 0.198 0.248 0.198 0.008 0.000 chr6 26153122 26163607
H2BC6 193 66 63 38 1 0 0.748 0.256 0.244 0.147 0.004 0.000 chr6 26178761 26189230
H2BC7 199 64 54 38 1 0 0.771 0.248 0.209 0.147 0.004 0.000 chr6 26194516 26204988
H2BC8 182 54 76 51 0 0 0.705 0.209 0.295 0.198 0.000 0.000 chr6 26211200 26221688
H2BC9 188 56 66 47 1 0 0.729 0.217 0.256 0.182 0.004 0.000 chr6 26246614 26257075
H2BK1 204 64 49 36 0 0 0.791 0.248 0.190 0.140 0.000 0.000 chr7 151202837 151215488
H2BN1 212 73 45 31 0 0 0.822 0.283 0.174 0.120 0.000 0.000 chr17 32890433 32911586
H2BW1 100 35 155 67 1 1 0.388 0.136 0.601 0.260 0.004 0.004 chrX 104006147 104018708
H2BW2 102 35 153 68 0 0 0.395 0.136 0.593 0.264 0.000 0.000 chrX 104034956 104047454
H3-3A 217 79 41 26 0 0 0.841 0.306 0.159 0.101 0.000 0.000 chr1 226057716 226077019
H3-3B 215 81 42 23 0 0 0.833 0.314 0.163 0.089 0.000 0.000 chr17 75771434 75784779
H3-4 206 71 51 34 0 0 0.798 0.275 0.198 0.132 0.000 0.000 chr1 228419845 228430360
H3-5 221 83 33 19 0 0 0.857 0.322 0.128 0.074 0.000 0.000 chr12 31786185 31797298
H3-7 150 48 99 51 4 3 0.581 0.186 0.384 0.198 0.016 0.012 chr1 143900510 143910977
H3C10 195 72 57 31 3 0 0.756 0.279 0.221 0.120 0.012 0.000 chr6 27805051 27815536
H3C11 186 61 72 44 0 0 0.721 0.236 0.279 0.171 0.000 0.000 chr6 27866845 27877346
H3C12 200 67 58 38 0 0 0.775 0.260 0.225 0.147 0.000 0.000 chr6 27885315 27895826
H3C13 187 55 67 46 0 0 0.725 0.213 0.260 0.178 0.000 0.000 chr1 149808225 149818693
H3C14 151 35 88 54 1 0 0.585 0.136 0.341 0.209 0.004 0.000 chr1 149835687 149846208
H3C15 166 43 85 55 0 0 0.643 0.167 0.329 0.213 0.000 0.000 chr1 149847608 149858125
H3C1 197 60 57 42 2 1 0.764 0.233 0.221 0.163 0.008 0.004 chr6 26015451 26025958
H3C2 197 54 59 51 1 0 0.764 0.209 0.229 0.198 0.004 0.000 chr6 26026589 26037099
H3C3 210 73 45 30 2 1 0.814 0.283 0.174 0.116 0.008 0.004 chr6 26040384 26050869
H3C4 197 61 56 40 1 0 0.764 0.236 0.217 0.155 0.004 0.000 chr6 26191784 26202286
H3C6 176 48 78 53 0 0 0.682 0.186 0.302 0.205 0.000 0.000 chr6 26220135 26230616
H3C7 186 54 70 51 2 0 0.721 0.209 0.271 0.198 0.008 0.000 chr6 26245142 26255635
H3C8 198 65 56 36 0 0 0.767 0.252 0.217 0.140 0.000 0.000 chr6 26265918 26276413
H3Y1 187 57 68 46 0 0 0.725 0.221 0.264 0.178 0.000 0.000 chr5 17649868 17660849
H3Y2 199 71 57 33 1 0 0.771 0.275 0.221 0.128 0.004 0.000 chr5 17485967 17497076
H4C11 198 61 53 38 0 0 0.767 0.236 0.205 0.147 0.000 0.000 chr6 27819092 27829480
H4C12 209 66 40 31 0 0 0.810 0.256 0.155 0.120 0.000 0.000 chr6 27826174 27836560
H4C13 191 64 66 41 0 0 0.740 0.248 0.256 0.159 0.000 0.000 chr6 27868148 27878534
H4C14 118 17 111 66 1 0 0.457 0.066 0.430 0.256 0.004 0.000 chr1 149827657 149838052
H4C15 103 31 131 62 8 1 0.399 0.120 0.508 0.240 0.031 0.004 chr1 149855764 149866159
H4C16 218 82 36 20 1 0 0.845 0.318 0.140 0.078 0.004 0.000 chr12 14765720 14776131
H4C1 198 62 58 42 1 0 0.767 0.240 0.225 0.163 0.004 0.000 chr6 26016649 26027050
H4C2 199 57 57 48 1 0 0.771 0.221 0.221 0.186 0.004 0.000 chr6 26021896 26032283
H4C3 203 64 54 40 1 1 0.787 0.248 0.209 0.155 0.004 0.004 chr6 26098933 26109337
H4C4 185 58 69 45 1 0 0.717 0.225 0.267 0.174 0.004 0.000 chr6 26183710 26194112
H4C5 203 69 50 32 1 0 0.787 0.267 0.194 0.124 0.004 0.000 chr6 26199610 26210021
H4C6 179 51 79 54 0 0 0.694 0.198 0.306 0.209 0.000 0.000 chr6 26235393 26245793
H4C7 182 55 69 46 3 0 0.705 0.213 0.267 0.178 0.012 0.000 chr6 26241611 26251996
H4C8 202 67 54 37 1 0 0.783 0.260 0.209 0.143 0.004 0.000 chr6 26280126 26290534
H4C9 195 64 60 40 2 0 0.756 0.248 0.233 0.155 0.008 0.000 chr6 27134282 27144678
H6PD 201 65 43 30 0 0 0.779 0.252 0.167 0.116 0.000 0.000 chr1 9229774 9276337
HAAO 204 62 41 31 0 0 0.791 0.240 0.159 0.120 0.000 0.000 chr2 42762089 42797583
HABP2 222 79 27 18 0 0 0.860 0.306 0.105 0.070 0.000 0.000 chr10 113548053 113594602