Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GZMH 210 71 46 32 1 1 0.814 0.275 0.178 0.124 0.004 0.004 chr14 24601480 24614685
view GZMK 231 91 26 13 1 1 0.895 0.353 0.101 0.050 0.004 0.004 chr5 55019256 55039570
view GZMM 198 69 50 29 0 0 0.767 0.267 0.194 0.112 0.000 0.000 chr19 539053 554922
view H1-0 179 61 75 41 1 1 0.694 0.236 0.291 0.159 0.004 0.004 chr22 37800229 37812432
view H1-10 199 66 54 36 1 0 0.771 0.256 0.209 0.140 0.004 0.000 chr3 129309771 129321286
view H1-1 197 58 58 44 1 1 0.764 0.225 0.225 0.171 0.004 0.004 chr6 26012032 26022787
view H1-2 210 78 44 26 2 0 0.814 0.302 0.171 0.101 0.008 0.000 chr6 26050740 26061470
view H1-3 169 42 86 61 1 0 0.655 0.163 0.333 0.236 0.004 0.000 chr6 26229212 26239987
view H1-4 193 55 61 48 3 1 0.748 0.213 0.236 0.186 0.012 0.004 chr6 26151329 26162115
view H1-5 194 70 61 32 0 0 0.752 0.271 0.236 0.124 0.000 0.000 chr6 27861792 27872588
view H1-6 203 60 51 43 2 1 0.787 0.233 0.198 0.167 0.008 0.004 chr6 26102412 26113135
view H1-7 211 70 46 34 1 1 0.818 0.271 0.178 0.132 0.004 0.004 chr12 48323980 48335279
view H1-8 210 71 43 29 0 0 0.814 0.275 0.167 0.112 0.000 0.000 chr3 129538175 129556467
view H2AB1 97 28 160 76 0 0 0.376 0.109 0.620 0.295 0.000 0.000 chrX 154879972 154890558
view H2AB2 65 13 150 59 0 0 0.252 0.050 0.581 0.229 0.000 0.000 chrX 155375709 155386299
view H2AB3 81 22 140 63 17 3 0.314 0.085 0.543 0.244 0.066 0.012 chrX 155454415 155465005
view H2AC11 202 69 55 35 0 0 0.783 0.267 0.213 0.136 0.000 0.000 chr6 27128043 27138535
view H2AC12 190 65 65 38 1 0 0.736 0.252 0.252 0.147 0.004 0.000 chr6 27142106 27152562
view H2AC13 204 78 48 25 3 0 0.791 0.302 0.186 0.097 0.012 0.000 chr6 27803173 27813667
view H2AC14 192 68 57 33 3 0 0.744 0.264 0.221 0.128 0.012 0.000 chr6 27809302 27819777
view H2AC15 203 73 50 28 0 0 0.787 0.283 0.194 0.109 0.000 0.000 chr6 27832880 27843375
view H2AC16 186 65 71 39 0 0 0.721 0.252 0.275 0.151 0.000 0.000 chr6 27860317 27870798
view H2AC17 203 71 55 34 0 0 0.787 0.275 0.213 0.132 0.000 0.000 chr6 27887699 27898185
view H2AC18 160 35 83 59 1 0 0.620 0.136 0.322 0.229 0.004 0.000 chr1 149837218 149847750
view H2AC19 164 50 86 49 1 0 0.636 0.194 0.333 0.190 0.004 0.000 chr1 149846061 149856594
view H2AC1 206 70 49 33 1 0 0.798 0.271 0.190 0.128 0.004 0.000 chr6 25721063 25731562
view H2AC20 183 63 73 41 0 0 0.709 0.244 0.283 0.159 0.000 0.000 chr1 149881918 149892411
view H2AC21 180 61 76 43 0 0 0.698 0.236 0.295 0.167 0.000 0.000 chr1 149882469 149892965
view H2AC25 220 85 33 16 1 1 0.853 0.329 0.128 0.062 0.004 0.004 chr1 228452364 228462873
view H2AC4 202 58 54 47 1 0 0.783 0.225 0.209 0.182 0.004 0.000 chr6 26028092 26038618
view H2AC6 197 57 58 46 1 0 0.764 0.221 0.225 0.178 0.004 0.000 chr6 26119172 26129690
view H2AC7 200 64 52 37 1 0 0.775 0.248 0.202 0.143 0.004 0.000 chr6 26193784 26204293
view H2AC8 180 55 75 47 0 0 0.698 0.213 0.291 0.182 0.000 0.000 chr6 26211921 26222437
view H2AJ 225 85 31 19 1 0 0.872 0.329 0.120 0.074 0.004 0.000 chr12 14769405 14780024
view H2AL3 105 35 145 64 1 0 0.407 0.136 0.562 0.248 0.004 0.000 chrX 37989272 37999904
view H2AP 110 36 142 64 0 0 0.426 0.140 0.550 0.248 0.000 0.000 chrX 37985779 37996314
view H2AX 214 74 39 27 1 0 0.829 0.287 0.151 0.105 0.004 0.000 chr11 119088874 119100465
view H2AZ1 204 74 51 29 0 0 0.791 0.287 0.198 0.112 0.000 0.000 chr4 99943088 99955275
view H2AZ2 202 64 46 32 0 0 0.783 0.248 0.178 0.124 0.000 0.000 chr7 44826978 44853087
view H2BC10 197 62 57 39 0 0 0.764 0.240 0.221 0.151 0.000 0.000 chr6 26267931 26278412
view H2BC11 197 67 58 36 0 0 0.764 0.260 0.225 0.140 0.000 0.000 chr6 27127316 27137795
view H2BC12L 204 69 48 31 0 0 0.791 0.267 0.186 0.120 0.000 0.000 chr21 43560182 43570648
view H2BC12 191 65 64 38 1 0 0.740 0.252 0.248 0.147 0.004 0.000 chr6 27141361 27151855
view H2BC13 205 76 49 28 3 0 0.795 0.295 0.190 0.109 0.012 0.000 chr6 27802479 27812929
view H2BC14 189 65 60 36 3 0 0.733 0.252 0.233 0.140 0.012 0.000 chr6 27810022 27820489
view H2BC15 207 78 45 22 0 0 0.802 0.302 0.174 0.085 0.000 0.000 chr6 27833569 27844110
view H2BC17 205 72 53 33 0 0 0.795 0.279 0.205 0.128 0.000 0.000 chr6 27888425 27898891
view H2BC18 182 55 73 48 1 0 0.705 0.213 0.283 0.186 0.004 0.000 chr1 149806879 149817370
view H2BC1 208 71 47 31 0 0 0.806 0.275 0.182 0.120 0.000 0.000 chr6 25721777 25732345
view H2BC21 182 62 75 42 0 0 0.705 0.240 0.291 0.163 0.000 0.000 chr1 149879459 149891682