Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view HBG1 216 79 37 23 2 1 0.837 0.306 0.143 0.089 0.008 0.004 chr11 5243269 5254857
view HBG2 214 77 42 26 0 0 0.829 0.298 0.163 0.101 0.000 0.000 chr11 5248188 5259781
view HBM 184 63 65 34 0 0 0.713 0.244 0.252 0.132 0.000 0.000 chr16 160978 171764
view HBP1 183 60 59 36 0 0 0.709 0.233 0.229 0.140 0.000 0.000 chr7 107164003 107207522
view HBQ1 191 64 58 34 0 0 0.740 0.248 0.225 0.132 0.000 0.000 chr16 175459 186179
view HBS1L 173 58 71 40 0 0 0.671 0.225 0.275 0.155 0.000 0.000 chr6 134955378 135059822
view HBZ 216 77 36 22 1 1 0.837 0.298 0.140 0.085 0.004 0.004 chr16 147644 159503
view HCAR1 217 80 39 23 0 0 0.841 0.310 0.151 0.089 0.000 0.000 chr12 122721076 122735844
view HCAR2 213 75 42 27 1 1 0.826 0.291 0.163 0.105 0.004 0.004 chr12 122696293 122708357
view HCAR3 211 77 42 25 0 0 0.818 0.298 0.163 0.097 0.000 0.000 chr12 122709756 122721811
view HCCS 53 11 194 88 1 0 0.205 0.043 0.752 0.341 0.004 0.000 chrX 11106332 11128086
view HCFC1R1 205 70 49 31 0 0 0.795 0.271 0.190 0.120 0.000 0.000 chr16 3017625 3028942
view HCFC1 72 19 171 73 0 0 0.279 0.074 0.663 0.283 0.000 0.000 chrX 153942557 153976818
view HCFC2 190 66 60 33 0 0 0.736 0.256 0.233 0.128 0.000 0.000 chr12 104059531 104111524
view HCK 144 33 93 62 0 0 0.558 0.128 0.360 0.240 0.000 0.000 chr20 32047242 32106856
view HCLS1 194 66 53 31 0 0 0.752 0.256 0.205 0.120 0.000 0.000 chr3 121626399 121665903
view HCN1 112 33 103 56 0 0 0.434 0.128 0.399 0.217 0.000 0.000 chr5 45249948 45701380
view HCN2 203 58 34 28 0 0 0.787 0.225 0.132 0.109 0.000 0.000 chr19 584881 622159
view HCN3 169 50 79 47 0 0 0.655 0.194 0.306 0.182 0.000 0.000 chr1 155272463 155294848
view HCN4 171 43 63 44 0 0 0.663 0.167 0.244 0.171 0.000 0.000 chr15 73314859 73373958
view HCRTR1 166 54 85 49 0 0 0.643 0.209 0.329 0.190 0.000 0.000 chr1 31612689 31632613
view HCRTR2 183 57 45 28 0 0 0.709 0.221 0.174 0.109 0.000 0.000 chr6 55169515 55287617
view HCRT 188 61 64 40 1 0 0.729 0.236 0.248 0.155 0.004 0.000 chr17 42179060 42190452
view HCST 203 61 49 38 0 0 0.787 0.236 0.190 0.147 0.000 0.000 chr19 35897529 35909377
view HDAC10 223 81 32 21 0 0 0.864 0.314 0.124 0.081 0.000 0.000 chr22 50240183 50256265
view HDAC11 209 74 44 26 0 0 0.810 0.287 0.171 0.101 0.000 0.000 chr3 13475306 13511416
view HDAC1 72 6 158 83 0 0 0.279 0.023 0.612 0.322 0.000 0.000 chr1 32287083 32338626
view HDAC2 200 76 56 29 0 0 0.775 0.295 0.217 0.112 0.000 0.000 chr6 113928028 113976148
view HDAC3 193 60 54 36 0 0 0.748 0.233 0.209 0.140 0.000 0.000 chr5 141615881 141641849
view HDAC4 120 15 66 45 0 0 0.465 0.058 0.256 0.174 0.000 0.000 chr2 239043168 239406020
view HDAC5 147 42 88 48 0 0 0.570 0.163 0.341 0.186 0.000 0.000 chr17 44071753 44128641
view HDAC6 71 11 178 87 0 0 0.275 0.043 0.690 0.337 0.000 0.000 chrX 48797067 48829976
view HDAC7 189 51 59 45 0 0 0.733 0.198 0.229 0.174 0.000 0.000 chr12 47777722 47824903
view HDAC8 42 5 181 82 0 0 0.163 0.019 0.702 0.318 0.000 0.000 chrX 72324516 72577843
view HDAC9 77 12 94 54 0 0 0.298 0.047 0.364 0.209 0.000 0.000 chr7 18490749 19007416
view HDC 208 67 43 32 0 0 0.806 0.260 0.167 0.124 0.000 0.000 chr15 50236947 50270726
view HDDC2 186 65 61 33 0 0 0.721 0.252 0.236 0.128 0.000 0.000 chr6 125270350 125306967
view HDDC3 199 67 59 38 0 0 0.771 0.260 0.229 0.147 0.000 0.000 chr15 90924968 90937549
view HDGFL1 215 78 39 25 3 2 0.833 0.302 0.151 0.097 0.012 0.008 chr6 22564566 22576666
view HDGFL2 178 44 58 44 0 0 0.690 0.171 0.225 0.171 0.000 0.000 chr19 4467297 4507207
view HDGFL3 122 26 110 63 0 0 0.473 0.101 0.426 0.244 0.000 0.000 chr15 83122753 83212823
view HDGF 170 38 74 54 0 0 0.659 0.147 0.287 0.209 0.000 0.000 chr1 156737109 156756675
view HDHD2 182 63 64 35 0 0 0.705 0.244 0.248 0.136 0.000 0.000 chr18 47102410 47155500
view HDHD3 231 87 24 15 0 0 0.895 0.337 0.093 0.058 0.000 0.000 chr9 113368422 113381986
view HDHD5 210 74 40 26 0 0 0.814 0.287 0.155 0.101 0.000 0.000 chr22 17132520 17164277
view HDLBP 176 51 61 37 0 0 0.682 0.198 0.236 0.143 0.000 0.000 chr2 241222291 241320672
view HDX 72 27 160 64 0 0 0.279 0.105 0.620 0.248 0.000 0.000 chrX 84312878 84507453
view HEATR1 193 75 53 23 1 1 0.748 0.291 0.205 0.089 0.004 0.004 chr1 236544005 236609516
view HEATR3 156 45 85 50 0 0 0.605 0.174 0.329 0.194 0.000 0.000 chr16 50060970 50112272
view HEATR4 183 54 53 35 0 0 0.709 0.209 0.205 0.136 0.000 0.000 chr14 73473484 73563947