Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view HK1 139 36 73 46 0 0 0.539 0.140 0.283 0.178 0.000 0.000 chr10 69273496 69406882
view HK1 147 33 79 52 0 0 0.570 0.128 0.306 0.202 0.000 0.000 chr10 69313847 69406882
view HK2 196 67 43 25 0 0 0.760 0.260 0.167 0.097 0.000 0.000 chr2 74829127 74898359
view HK3 203 68 50 33 0 0 0.787 0.264 0.194 0.128 0.000 0.000 chr5 176875869 176904346
view HKDC1 189 64 54 30 0 0 0.733 0.248 0.209 0.116 0.000 0.000 chr10 69215332 69272552
view HLA-A 208 67 40 29 0 0 0.806 0.260 0.155 0.112 0.000 0.000 chr6 29937532 29950870
view HLA-B 233 89 24 16 1 0 0.903 0.345 0.093 0.062 0.004 0.000 chr6 31348875 31362179
view HLA-C 224 83 31 20 2 1 0.868 0.322 0.120 0.078 0.008 0.004 chr6 31263749 31277092
view HLA-DMA 223 85 28 16 4 1 0.864 0.329 0.109 0.062 0.016 0.004 chr6 32943618 32958097
view HLA-DMB 226 87 24 15 6 2 0.876 0.337 0.093 0.058 0.023 0.008 chr6 32929636 32946028
view HLA-DOA 235 92 22 12 1 1 0.911 0.357 0.085 0.047 0.004 0.004 chr6 32999182 33014591
view HLA-DOB 229 89 29 16 0 0 0.888 0.345 0.112 0.062 0.000 0.000 chr6 32807763 32822002
view HLA-DPA1 52 12 124 50 0 0 0.202 0.047 0.481 0.194 0.000 0.000 chr6 33059569 33078649
view HLA-DPB1 227 83 30 21 0 0 0.880 0.322 0.116 0.081 0.000 0.000 chr6 33070990 33094696
view HLA-DQA1 42 16 129 59 0 0 0.163 0.062 0.500 0.229 0.000 0.000 chr6 32632406 32648684
view HLA-DQA2 227 89 29 15 2 1 0.880 0.345 0.112 0.058 0.008 0.004 chr6 32736391 32752198
view HLA-DQB1 200 86 49 16 3 2 0.775 0.333 0.190 0.062 0.012 0.008 chr6 32654467 32671657
view HLA-DQB2 227 89 31 16 0 0 0.880 0.345 0.120 0.062 0.000 0.000 chr6 32751098 32768532
view HLA-DRA 229 92 28 12 0 0 0.888 0.357 0.109 0.047 0.000 0.000 chr6 32434887 32450046
view HLA-DRB1 104 34 119 55 1 0 0.403 0.132 0.461 0.213 0.004 0.000 chr6 32573775 32594848
view HLA-DRB5 9 4 69 34 0 0 0.035 0.016 0.267 0.132 0.000 0.000 chr6 32512353 32535287
view HLA-E 228 89 28 15 0 0 0.884 0.345 0.109 0.058 0.000 0.000 chr6 30484509 30499194
view HLA-F 221 83 35 20 0 0 0.857 0.322 0.136 0.078 0.000 0.000 chr6 29718434 29732296
view HLA-G 239 95 18 10 1 0 0.926 0.368 0.070 0.039 0.004 0.000 chr6 29822825 29836021
view HLCS 128 30 73 45 0 0 0.496 0.116 0.283 0.174 0.000 0.000 chr21 36743626 36971669
view HLF 203 66 45 32 0 0 0.787 0.256 0.174 0.124 0.000 0.000 chr17 55259960 55330187
view HLTF 201 74 48 27 1 1 0.779 0.287 0.186 0.105 0.004 0.004 chr3 149025127 149091533
view HLX 218 79 37 24 1 0 0.845 0.306 0.143 0.093 0.004 0.000 chr1 220874443 220890059
view HM13 100 13 127 72 0 0 0.388 0.050 0.492 0.279 0.000 0.000 chr20 31509442 31574543
view HMBOX1 171 61 73 40 0 0 0.663 0.236 0.283 0.155 0.000 0.000 chr8 28885395 29058262
view HMBS 221 78 33 25 2 0 0.857 0.302 0.128 0.097 0.008 0.000 chr11 119079881 119098549
view HMCES 169 46 79 50 0 0 0.655 0.178 0.306 0.194 0.000 0.000 chr3 129273870 129311186
view HMCN1 45 2 133 71 0 0 0.174 0.008 0.516 0.275 0.000 0.000 chr1 185729391 186195949
view HMCN2 128 18 57 37 0 0 0.496 0.070 0.221 0.143 0.000 0.000 chr9 130260760 130439123
view HMG20A 182 68 65 33 0 0 0.705 0.264 0.252 0.128 0.000 0.000 chr15 77415888 77490603
view HMG20B 202 59 45 35 0 0 0.783 0.229 0.174 0.136 0.000 0.000 chr19 3567944 3584083
view HMGA1 160 40 90 58 0 0 0.620 0.155 0.349 0.225 0.000 0.000 chr6 34231873 34251231
view HMGA2 117 35 100 52 0 0 0.453 0.136 0.388 0.202 0.000 0.000 chr12 65819483 65971291
view HMGB1 191 54 58 43 0 0 0.740 0.209 0.225 0.167 0.000 0.000 chr13 30451704 30470936
view HMGB2 184 55 71 47 0 0 0.713 0.213 0.275 0.182 0.000 0.000 chr4 173326376 173339358
view HMGB3 100 32 154 69 0 0 0.388 0.124 0.597 0.267 0.000 0.000 chrX 150978335 150995771
view HMGB4 200 66 56 38 1 0 0.775 0.256 0.217 0.147 0.004 0.000 chr1 33859079 33869791
view HMGCLL1 166 61 68 33 0 0 0.643 0.236 0.264 0.128 0.000 0.000 chr6 55429373 55584192
view HMGCL 185 65 60 34 0 0 0.717 0.252 0.233 0.132 0.000 0.000 chr1 23796885 23830429
view HMGCR 194 70 54 29 0 0 0.752 0.271 0.209 0.112 0.000 0.000 chr5 75332220 75367101
view HMGCS1 155 44 97 58 0 0 0.601 0.171 0.376 0.225 0.000 0.000 chr5 43282470 43318412
view HMGCS2 216 79 33 19 0 0 0.837 0.306 0.128 0.074 0.000 0.000 chr1 119743002 119773905
view HMGN1 206 67 50 36 0 0 0.798 0.260 0.194 0.140 0.000 0.000 chr21 39337315 39354088
view HMGN2 194 57 58 42 0 0 0.752 0.221 0.225 0.163 0.000 0.000 chr1 26467440 26481642
view HMGN3 160 42 85 55 0 0 0.620 0.163 0.329 0.213 0.000 0.000 chr6 79196245 79239682