Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
HPF1 159 44 82 47 0 0 0.616 0.171 0.318 0.182 0.000 0.000 chr4 169724470 169762944
HPGDS 155 44 85 51 0 0 0.601 0.171 0.329 0.198 0.000 0.000 chr4 94293535 94347836
HPGD 206 74 44 25 0 0 0.798 0.287 0.171 0.097 0.000 0.000 chr4 174485175 174527488
HPN 191 58 54 39 0 0 0.740 0.225 0.209 0.151 0.000 0.000 chr19 35036721 35071573
HPRT1 74 25 169 72 0 0 0.287 0.097 0.655 0.279 0.000 0.000 chrX 134455165 134505668
HPR 205 74 52 30 0 0 0.795 0.287 0.202 0.116 0.000 0.000 chr16 72058226 72082246
HPS1 216 75 37 25 1 1 0.837 0.291 0.143 0.097 0.004 0.004 chr10 98411198 98451935
HPS3 195 66 47 27 0 0 0.756 0.256 0.182 0.105 0.000 0.000 chr3 149124638 149178732
HPS4 201 74 48 25 0 0 0.779 0.287 0.186 0.097 0.000 0.000 chr22 26445882 26488783
HPS5 185 64 64 34 0 0 0.717 0.248 0.248 0.132 0.000 0.000 chr11 18273676 18327140
HPS6 197 70 61 35 0 0 0.764 0.271 0.236 0.136 0.000 0.000 chr10 102060349 102073036
HPSE2 71 16 103 48 0 0 0.275 0.062 0.399 0.186 0.000 0.000 chr10 98452077 99240852
HPSE 159 38 78 50 0 0 0.616 0.147 0.302 0.194 0.000 0.000 chr4 83287461 83339848
HPX 215 71 39 30 0 0 0.833 0.275 0.151 0.116 0.000 0.000 chr11 6426049 6445987
HP 212 73 42 28 0 0 0.822 0.283 0.163 0.109 0.000 0.000 chr16 72049505 72066055
HRAS 198 65 53 33 0 0 0.767 0.252 0.205 0.128 0.000 0.000 chr11 527242 540576
HRCT1 214 82 43 23 0 0 0.829 0.318 0.167 0.089 0.000 0.000 chr9 35901202 35912136
HRC 202 63 47 35 2 0 0.783 0.244 0.182 0.136 0.008 0.000 chr19 49146198 49160396
HRG 235 88 21 15 0 0 0.911 0.341 0.081 0.058 0.000 0.000 chr3 186661014 186683234
HRH1 175 55 50 31 0 0 0.678 0.213 0.194 0.120 0.000 0.000 chr3 11149493 11268557
HRH2 131 35 102 61 0 0 0.508 0.136 0.395 0.236 0.000 0.000 chr5 175653071 175715756
HRH3 183 49 62 44 0 0 0.709 0.190 0.240 0.171 0.000 0.000 chr20 62209960 62225278
HRH4 211 78 41 22 0 0 0.818 0.302 0.159 0.085 0.000 0.000 chr18 24455637 24484961
HRK 182 65 66 33 0 0 0.705 0.252 0.256 0.128 0.000 0.000 chr12 116851144 116886441
HRNR 208 67 47 35 0 0 0.806 0.260 0.182 0.136 0.000 0.000 chr1 152207076 152229193
HROB 160 57 88 42 1 1 0.620 0.221 0.341 0.163 0.004 0.004 chr17 44136930 44167476
HRURF 203 60 49 39 0 0 0.787 0.233 0.190 0.151 0.000 0.000 chr8 22125458 22136010
HR 203 59 49 41 0 0 0.787 0.229 0.190 0.159 0.000 0.000 chr8 22109419 22136010
HS1BP3 201 64 50 35 0 0 0.779 0.248 0.194 0.136 0.000 0.000 chr2 20612818 20656098
HS2ST1 76 6 144 79 0 0 0.295 0.023 0.558 0.306 0.000 0.000 chr1 86909635 87114982
HS3ST1 219 78 24 17 0 0 0.849 0.302 0.093 0.066 0.000 0.000 chr4 11388150 11433894
HS3ST2 174 46 58 40 0 0 0.674 0.178 0.225 0.155 0.000 0.000 chr16 22809162 22921338
HS3ST3A1 168 50 57 38 0 0 0.651 0.194 0.221 0.147 0.000 0.000 chr17 13489032 13606929
HS3ST3B1 215 73 35 25 0 0 0.833 0.283 0.136 0.097 0.000 0.000 chr17 14296081 14354404
HS3ST4 82 17 70 41 0 0 0.318 0.066 0.271 0.159 0.000 0.000 chr16 25686959 26142685
HS3ST5 102 15 91 58 0 0 0.395 0.058 0.353 0.225 0.000 0.000 chr6 114050596 114348023
HS3ST6 216 77 38 24 1 1 0.837 0.298 0.147 0.093 0.004 0.004 chr16 1906475 1923415
HS6ST1 146 31 87 56 0 0 0.566 0.120 0.337 0.217 0.000 0.000 chr2 128260480 128323868
HS6ST2 39 8 184 77 0 0 0.151 0.031 0.713 0.298 0.000 0.000 chrX 132621015 132963629
HS6ST3 58 10 89 45 0 0 0.225 0.039 0.345 0.174 0.000 0.000 chr13 96085107 96844562
HSBP1L1 205 70 51 33 0 0 0.795 0.271 0.198 0.128 0.000 0.000 chr18 79959643 79975822
HSBP1 233 87 24 17 0 0 0.903 0.337 0.093 0.066 0.000 0.000 chr16 83802978 83824737
HSCB 204 74 49 27 0 0 0.791 0.287 0.190 0.105 0.000 0.000 chr22 28737039 28762510
HSD11B1L 190 52 58 44 0 0 0.736 0.202 0.225 0.171 0.000 0.000 chr19 5676027 5693522
HSD11B1 199 79 51 24 0 0 0.771 0.306 0.198 0.093 0.000 0.000 chr1 209699846 209739929
HSD11B2 144 39 108 62 0 0 0.558 0.151 0.419 0.240 0.000 0.000 chr16 67426121 67442553
HSD17B10 76 25 181 79 0 0 0.295 0.097 0.702 0.306 0.000 0.000 chrX 53426261 53439370
HSD17B11 194 64 51 32 0 0 0.752 0.248 0.198 0.124 0.000 0.000 chr4 87331515 87396188
HSD17B12 139 32 92 58 0 0 0.539 0.124 0.357 0.225 0.000 0.000 chr11 43675738 43861615
HSD17B13 220 80 34 21 0 0 0.853 0.310 0.132 0.081 0.000 0.000 chr4 87298794 87327882