Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
HOOK2 179 51 72 47 0 0 0.694 0.198 0.279 0.182 0.000 0.000 chr19 12758003 12780552
HOOK3 80 6 141 81 0 0 0.310 0.023 0.547 0.314 0.000 0.000 chr8 42891978 43035535
HOPX 187 64 53 28 0 0 0.725 0.248 0.205 0.109 0.000 0.000 chr4 56642998 56686296
HORMAD1 195 72 57 29 0 0 0.756 0.279 0.221 0.112 0.000 0.000 chr1 150693060 150725895
HORMAD2 174 51 71 45 0 0 0.674 0.198 0.275 0.174 0.000 0.000 chr22 30075464 30182075
HOXA10 217 77 35 22 0 0 0.841 0.298 0.136 0.085 0.000 0.000 chr7 27165605 27179320
HOXA11 215 73 40 29 0 0 0.833 0.283 0.155 0.112 0.000 0.000 chr7 27176157 27190232
HOXA13 207 69 47 34 0 0 0.802 0.267 0.182 0.132 0.000 0.000 chr7 27189364 27205091
HOXA1 206 66 48 36 1 0 0.798 0.256 0.186 0.140 0.004 0.000 chr7 27087993 27101000
HOXA2 201 62 51 38 0 0 0.779 0.240 0.198 0.147 0.000 0.000 chr7 27095354 27107683
HOXA3 162 46 76 44 0 0 0.628 0.178 0.295 0.171 0.000 0.000 chr7 27102010 27157583
HOXA4 202 67 50 34 1 0 0.783 0.260 0.194 0.132 0.004 0.000 chr7 27123525 27135757
HOXA5 198 68 52 30 0 0 0.767 0.264 0.202 0.116 0.000 0.000 chr7 27136052 27148681
HOXA6 192 65 62 37 1 0 0.744 0.252 0.240 0.143 0.004 0.000 chr7 27140396 27152774
HOXA7 197 64 57 38 0 0 0.764 0.248 0.221 0.147 0.000 0.000 chr7 27148716 27161675
HOXA9 215 74 41 29 0 0 0.833 0.287 0.159 0.112 0.000 0.000 chr7 27157438 27170537
HOXB13 212 77 43 25 0 0 0.822 0.298 0.167 0.097 0.000 0.000 chr17 48719763 48733750
HOXB1 212 72 45 32 0 0 0.822 0.279 0.174 0.124 0.000 0.000 chr17 48523526 48536011
HOXB2 212 72 45 32 0 0 0.822 0.279 0.174 0.124 0.000 0.000 chr17 48537655 48550109
HOXB3 186 62 56 35 0 0 0.721 0.240 0.217 0.136 0.000 0.000 chr17 48543870 48595241
HOXB4 203 71 53 32 0 0 0.787 0.275 0.205 0.124 0.000 0.000 chr17 48570507 48583350
HOXB5 206 74 52 31 0 0 0.798 0.287 0.202 0.120 0.000 0.000 chr17 48586257 48598779
HOXB6 196 65 61 39 0 0 0.760 0.252 0.236 0.151 0.000 0.000 chr17 48590751 48609986
HOXB7 206 69 46 31 1 1 0.798 0.267 0.178 0.120 0.004 0.004 chr17 48602232 48616017
HOXB8 210 73 45 29 0 0 0.814 0.283 0.174 0.112 0.000 0.000 chr17 48607346 48620292
HOXB9 210 75 47 29 0 0 0.814 0.291 0.182 0.112 0.000 0.000 chr17 48616156 48631358
HOXC10 186 54 68 47 0 0 0.721 0.209 0.264 0.182 0.000 0.000 chr12 53980146 53995279
HOXC11 197 64 59 40 0 0 0.764 0.248 0.229 0.155 0.000 0.000 chr12 53968126 53982643
HOXC12 211 67 42 34 0 0 0.818 0.260 0.163 0.132 0.000 0.000 chr12 53949903 53963956
HOXC13 200 63 53 37 0 0 0.775 0.244 0.205 0.143 0.000 0.000 chr12 53933831 53951544
HOXC4 199 76 54 24 0 0 0.771 0.295 0.209 0.093 0.000 0.000 chr12 54048835 54061030
HOXC5 206 70 50 34 0 0 0.798 0.271 0.194 0.132 0.000 0.000 chr12 54028050 54040361
HOXC6 201 63 51 36 0 0 0.779 0.244 0.198 0.140 0.000 0.000 chr12 54023440 54035823
HOXC8 152 46 94 49 0 0 0.589 0.178 0.364 0.190 0.000 0.000 chr12 54003985 54017769
HOXC9 170 51 80 49 0 0 0.659 0.198 0.310 0.190 0.000 0.000 chr12 53995161 54008337
HOXD10 213 74 40 27 0 0 0.826 0.287 0.155 0.105 0.000 0.000 chr2 176111778 176124937
HOXD11 214 74 39 27 0 0 0.829 0.287 0.151 0.105 0.000 0.000 chr2 176102280 176114754
HOXD12 201 64 53 37 0 0 0.779 0.248 0.205 0.143 0.000 0.000 chr2 176094795 176107489
HOXD13 206 71 43 26 0 0 0.798 0.275 0.167 0.101 0.000 0.000 chr2 176087721 176100944
HOXD1 178 55 73 44 2 1 0.690 0.213 0.283 0.171 0.008 0.004 chr2 176183668 176195907
HOXD3 165 57 80 40 0 0 0.640 0.221 0.310 0.155 0.000 0.000 chr2 176152307 176178098
HOXD4 175 55 80 47 0 0 0.678 0.213 0.310 0.182 0.000 0.000 chr2 176146550 176158226
HOXD8 199 68 57 35 0 0 0.771 0.264 0.221 0.136 0.000 0.000 chr2 176124705 176137695
HOXD9 201 73 54 29 0 0 0.779 0.283 0.209 0.112 0.000 0.000 chr2 176117719 176129937
HP1BP3 188 63 56 30 0 0 0.729 0.244 0.217 0.116 0.000 0.000 chr1 20735266 20792307
HPCAL1 156 44 53 35 0 0 0.605 0.171 0.205 0.136 0.000 0.000 chr2 10297904 10432604
HPCAL4 209 73 43 27 1 1 0.810 0.283 0.167 0.105 0.004 0.004 chr1 39673648 39696433
HPCA 193 62 61 39 0 0 0.748 0.240 0.236 0.151 0.000 0.000 chr1 32881491 32899646
HPDL 204 66 50 35 0 0 0.791 0.256 0.194 0.136 0.000 0.000 chr1 45321895 45333710
HPD 202 66 50 33 0 0 0.783 0.256 0.194 0.128 0.000 0.000 chr12 121834527 121863859