Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
HMGN4 197 66 58 37 1 0 0.764 0.256 0.225 0.143 0.004 0.000 chr6 26533366 26551933
HMGN5 46 6 187 88 0 0 0.178 0.023 0.725 0.341 0.000 0.000 chrX 81108699 81206913
HMGXB3 189 62 58 36 0 0 0.733 0.240 0.225 0.140 0.000 0.000 chr5 149995739 150058128
HMGXB4 170 64 82 38 0 0 0.659 0.248 0.318 0.147 0.000 0.000 chr22 35252493 35300807
HMHB1 228 90 29 14 0 0 0.884 0.349 0.112 0.054 0.000 0.000 chr5 143807161 143825716
HMMR 202 68 46 28 0 0 0.783 0.264 0.178 0.109 0.000 0.000 chr5 163455632 163496941
HMOX1 191 71 57 27 0 0 0.740 0.275 0.221 0.105 0.000 0.000 chr22 35376096 35399207
HMOX2 156 45 84 49 0 0 0.605 0.174 0.326 0.190 0.000 0.000 chr16 4471398 4515347
HMSD 201 74 52 27 0 0 0.779 0.287 0.202 0.105 0.000 0.000 chr18 63944301 63966835
HMX1 214 67 40 34 0 0 0.829 0.260 0.155 0.132 0.000 0.000 chr4 8862048 8876839
HMX2 223 82 33 21 0 0 0.864 0.318 0.128 0.081 0.000 0.000 chr10 123143136 123155672
HMX3 231 83 25 20 0 0 0.895 0.322 0.097 0.078 0.000 0.000 chr10 123130970 123144423
HNF1A 204 72 43 25 0 0 0.791 0.279 0.167 0.097 0.000 0.000 chr12 120973543 121007512
HNF1B 204 69 39 24 0 0 0.791 0.267 0.151 0.093 0.000 0.000 chr17 37681431 37750059
HNF4A 160 42 58 37 0 0 0.620 0.163 0.225 0.143 0.000 0.000 chr20 44350699 44437845
HNF4G 196 73 54 27 0 0 0.760 0.283 0.209 0.105 0.000 0.000 chr8 75534869 75571834
HNMT 165 45 70 47 0 0 0.640 0.174 0.271 0.182 0.000 0.000 chr2 137959473 138021364
HNRNPA0 183 53 72 49 0 0 0.709 0.205 0.279 0.190 0.000 0.000 chr5 137740651 137759363
HNRNPA1L2 217 77 38 25 1 1 0.841 0.298 0.147 0.097 0.004 0.004 chr13 52637431 52648773
HNRNPA1L3 210 77 44 27 3 0 0.814 0.298 0.171 0.105 0.012 0.000 chr16 51640757 51652079
HNRNPA1 187 58 71 47 0 0 0.725 0.225 0.275 0.182 0.000 0.000 chr12 54275726 54292087
HNRNPA2B1 215 79 40 23 1 1 0.833 0.306 0.155 0.089 0.004 0.004 chr7 26184927 26205746
HNRNPA3 166 51 85 48 0 0 0.643 0.198 0.329 0.186 0.000 0.000 chr2 177207794 177228959
HNRNPAB 230 83 24 19 1 0 0.891 0.322 0.093 0.074 0.004 0.000 chr5 178199533 178216163
HNRNPCL1 176 61 45 26 35 17 0.682 0.236 0.174 0.101 0.136 0.066 chr1 12842377 12853720
HNRNPCL2 212 81 42 23 3 0 0.822 0.314 0.163 0.089 0.012 0.000 chr1 13110488 13121854
HNRNPCL3 58 23 125 61 2 2 0.225 0.089 0.484 0.236 0.008 0.008 chr1 13055769 13067878
HNRNPCL4 107 42 74 43 59 7 0.415 0.163 0.287 0.167 0.229 0.027 chr1 13158914 13170631
HNRNPC 193 63 47 30 0 0 0.748 0.244 0.182 0.116 0.000 0.000 chr14 21204147 21274442
HNRNPDL 173 53 77 45 1 1 0.671 0.205 0.298 0.174 0.004 0.004 chr4 82417569 82435462
HNRNPD 165 58 84 42 1 0 0.640 0.225 0.326 0.163 0.004 0.000 chr4 82347498 82378991
HNRNPF 181 54 65 42 0 0 0.702 0.209 0.252 0.163 0.000 0.000 chr10 43380618 43414186
HNRNPH1 214 75 42 29 0 0 0.829 0.291 0.163 0.112 0.000 0.000 chr5 179609178 179628671
HNRNPH2 89 26 166 76 0 0 0.345 0.101 0.643 0.295 0.000 0.000 chrX 101403222 101419133
HNRNPH3 201 71 50 30 0 0 0.779 0.275 0.194 0.116 0.000 0.000 chr10 68327064 68348193
HNRNPK 206 72 52 33 0 0 0.798 0.279 0.202 0.128 0.000 0.000 chr9 83963083 83985215
HNRNPLL 168 52 76 46 0 0 0.651 0.202 0.295 0.178 0.000 0.000 chr2 38556969 38607928
HNRNPL 195 60 57 39 0 0 0.756 0.233 0.221 0.151 0.000 0.000 chr19 38831370 38854986
HNRNPM 179 54 64 42 0 0 0.694 0.209 0.248 0.163 0.000 0.000 chr19 8439975 8494114
HNRNPR 176 63 69 33 0 0 0.682 0.244 0.267 0.128 0.000 0.000 chr1 23299688 23349284
HNRNPUL1 144 35 100 65 0 0 0.558 0.136 0.388 0.252 0.000 0.000 chr19 41259372 41312787
HNRNPUL2 175 57 80 46 0 0 0.678 0.221 0.310 0.178 0.000 0.000 chr11 62707630 62732457
HNRNPU 172 54 70 42 1 0 0.667 0.209 0.271 0.163 0.004 0.000 chr1 244845297 244869543
HOATZ 155 38 94 61 0 0 0.601 0.147 0.364 0.236 0.000 0.000 chr11 111509778 111542043
HOGA1 210 68 38 30 0 0 0.814 0.264 0.147 0.116 0.000 0.000 chr10 97579389 97617802
HOMER1 144 44 73 41 0 0 0.558 0.171 0.283 0.159 0.000 0.000 chr5 79367636 79519134
HOMER2 173 50 63 46 0 0 0.671 0.194 0.244 0.178 0.000 0.000 chr15 82843983 82957720
HOMER3 205 62 43 35 1 0 0.795 0.240 0.167 0.136 0.004 0.000 chr19 18924203 18946217
HOMEZ 196 71 53 28 0 0 0.760 0.275 0.205 0.109 0.000 0.000 chr14 23267422 23291132
HOOK1 125 43 116 57 0 0 0.484 0.167 0.450 0.221 0.000 0.000 chr1 59809949 59881322