Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view HSPBP1 156 34 91 61 0 0 0.605 0.132 0.353 0.236 0.000 0.000 chr19 55257223 55285110
view HSPD1 197 73 58 31 0 0 0.764 0.283 0.225 0.120 0.000 0.000 chr2 197481584 197504840
view HSPE1 202 77 55 27 0 0 0.783 0.298 0.213 0.105 0.000 0.000 chr2 197495379 197508449
view HSPG2 154 41 63 39 0 0 0.597 0.159 0.244 0.151 0.000 0.000 chr1 21817244 21942310
view HSPH1 197 65 53 34 0 0 0.764 0.252 0.205 0.132 0.000 0.000 chr13 31129973 31166904
view HTATIP2 209 79 45 22 0 0 0.810 0.306 0.174 0.085 0.000 0.000 chr11 20358714 20388782
view HTATSF1 72 25 184 78 0 0 0.279 0.097 0.713 0.302 0.000 0.000 chrX 136492592 136517346
view HTD2 183 54 66 43 0 0 0.709 0.209 0.256 0.167 0.000 0.000 chr3 58301520 58325193
view HTN1 219 79 38 25 0 0 0.849 0.306 0.147 0.097 0.000 0.000 chr4 70045438 70063848
view HTN3 205 73 49 29 2 1 0.795 0.283 0.190 0.112 0.008 0.004 chr4 70023459 70041538
view HTR1A 217 78 37 23 1 1 0.841 0.302 0.143 0.089 0.004 0.004 chr5 63952874 63967445
view HTR1B 222 85 32 16 0 0 0.860 0.329 0.124 0.062 0.000 0.000 chr6 77455924 77468491
view HTR1D 177 59 71 40 0 0 0.686 0.229 0.275 0.155 0.000 0.000 chr1 23186895 23222502
view HTR1E 149 62 79 32 0 0 0.578 0.240 0.306 0.124 0.000 0.000 chr6 86932528 87021679
view HTR1F 124 38 79 37 0 0 0.481 0.147 0.306 0.143 0.000 0.000 chr3 87787706 87998839
view HTR2A 167 55 60 34 0 0 0.647 0.213 0.233 0.132 0.000 0.000 chr13 46826546 46902053
view HTR2B 207 82 47 20 0 0 0.802 0.318 0.182 0.078 0.000 0.000 chr2 231103230 231130042
view HTR2C 26 2 200 86 0 0 0.101 0.008 0.775 0.333 0.000 0.000 chrX 114579086 114915061
view HTR3A 213 75 44 29 0 0 0.826 0.291 0.171 0.112 0.000 0.000 chr11 113970108 113995313
view HTR3B 208 77 37 19 0 0 0.806 0.298 0.143 0.074 0.000 0.000 chr11 113899796 113954079
view HTR3C 220 73 35 29 0 0 0.853 0.283 0.136 0.112 0.000 0.000 chr3 184048047 184065673
view HTR3D 224 80 32 23 0 0 0.868 0.310 0.124 0.089 0.000 0.000 chr3 184026742 184044369
view HTR3E 210 73 39 26 0 0 0.814 0.283 0.151 0.101 0.000 0.000 chr3 184092064 184111995
view HTR4 154 53 66 33 0 0 0.597 0.205 0.256 0.128 0.000 0.000 chr5 148476547 148659527
view HTR5A 214 76 42 27 0 0 0.829 0.295 0.163 0.105 0.000 0.000 chr7 155065324 155092392
view HTR6 199 68 52 30 0 0 0.771 0.264 0.202 0.116 0.000 0.000 chr1 19659875 19685966
view HTR7 201 76 48 24 0 0 0.779 0.295 0.186 0.093 0.000 0.000 chr10 90735823 90863039
view HTRA1 180 54 64 41 0 0 0.698 0.209 0.248 0.159 0.000 0.000 chr10 122456553 122519907
view HTRA2 195 73 63 32 0 0 0.756 0.283 0.244 0.124 0.000 0.000 chr2 74524933 74538319
view HTRA3 193 58 47 35 0 0 0.748 0.225 0.182 0.136 0.000 0.000 chr4 8264754 8312098
view HTRA4 213 68 39 31 0 0 0.826 0.264 0.151 0.120 0.000 0.000 chr8 38969228 38993663
view HTT 146 45 83 46 0 0 0.566 0.174 0.322 0.178 0.000 0.000 chr4 3069681 3248957
view HUNK 163 50 47 26 0 0 0.632 0.194 0.182 0.101 0.000 0.000 chr21 31868020 32009064
view HUS1B 215 79 40 23 1 1 0.833 0.306 0.155 0.089 0.004 0.004 chr6 650939 662100
view HUS1 204 72 51 30 0 0 0.791 0.279 0.198 0.116 0.000 0.000 chr7 47958288 47984615
view HUWE1 45 8 191 87 0 0 0.174 0.031 0.740 0.337 0.000 0.000 chrX 53527096 53691719
view HVCN1 104 8 128 85 0 0 0.403 0.031 0.496 0.329 0.000 0.000 chr12 110643686 110694115
view HYAL1 191 62 57 35 0 0 0.740 0.240 0.221 0.136 0.000 0.000 chr3 50294893 50308574
view HYAL2 176 55 75 45 0 0 0.682 0.213 0.291 0.174 0.000 0.000 chr3 50312808 50327745
view HYAL3 188 60 62 38 0 0 0.729 0.233 0.240 0.147 0.000 0.000 chr3 50287832 50304405
view HYAL4 196 63 47 29 0 0 0.760 0.244 0.182 0.112 0.000 0.000 chr7 123840169 123882481
view HYCC1 192 72 54 29 0 0 0.744 0.279 0.209 0.112 0.000 0.000 chr7 22929211 23019130
view HYCC2 87 4 142 88 0 0 0.337 0.016 0.550 0.341 0.000 0.000 chr2 200968718 201076671
view HYDIN 86 16 96 56 0 0 0.333 0.062 0.372 0.217 0.000 0.000 chr16 70797084 71235722
view HYI 210 75 47 30 1 0 0.814 0.291 0.182 0.116 0.004 0.000 chr1 43445989 43458931
view HYKK 205 77 45 22 0 0 0.795 0.298 0.174 0.085 0.000 0.000 chr15 78502577 78541645
view HYLS1 217 81 38 22 0 0 0.841 0.314 0.147 0.085 0.000 0.000 chr11 125882668 125905646
view HYOU1 206 72 47 31 0 0 0.798 0.279 0.182 0.120 0.000 0.000 chr11 119039188 119062205
view HYPK 177 56 81 49 0 0 0.686 0.217 0.314 0.190 0.000 0.000 chr15 43795599 43809427
view IAH1 170 43 80 58 1 0 0.659 0.167 0.310 0.225 0.004 0.000 chr2 9469551 9494742