Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
IFI6 177 48 76 52 1 1 0.686 0.186 0.295 0.202 0.004 0.004 chr1 27661064 27677192
IFIH1 109 26 131 70 0 0 0.422 0.101 0.508 0.271 0.000 0.000 chr2 162262074 162323684
IFIT1B 219 83 37 22 1 0 0.849 0.322 0.143 0.085 0.004 0.000 chr10 89373056 89390205
IFIT1 214 77 40 24 1 1 0.829 0.298 0.155 0.093 0.004 0.004 chr10 89387623 89411487
IFIT2 215 80 41 23 0 0 0.833 0.310 0.159 0.089 0.000 0.000 chr10 89297046 89314271
IFIT3 200 72 55 30 0 0 0.775 0.279 0.213 0.116 0.000 0.000 chr10 89322997 89345968
IFIT5 210 81 44 22 2 1 0.814 0.314 0.171 0.085 0.008 0.004 chr10 89409568 89425997
IFITM10 202 68 54 36 1 0 0.783 0.264 0.209 0.140 0.004 0.000 chr11 1727406 1755595
IFITM1 16 0 46 12 0 0 0.062 0.000 0.178 0.047 0.000 0.000 chr11 309040 320272
IFITM2 16 0 43 6 0 0 0.062 0.000 0.167 0.023 0.000 0.000 chr11 302816 314395
IFITM3 15 0 41 6 0 0 0.058 0.000 0.159 0.023 0.000 0.000 chr11 314676 325860
IFITM5 216 72 35 27 2 1 0.837 0.279 0.136 0.105 0.008 0.004 chr11 293200 304526
IFNA10 228 84 30 21 0 0 0.884 0.326 0.116 0.081 0.000 0.000 chr9 21201181 21212143
IFNA13 232 87 25 17 0 0 0.899 0.337 0.097 0.066 0.000 0.000 chr9 21362372 21373057
IFNA14 224 79 32 24 0 0 0.868 0.306 0.124 0.093 0.000 0.000 chr9 21234002 21245005
IFNA16 231 87 24 17 0 0 0.895 0.337 0.093 0.066 0.000 0.000 chr9 21211373 21222311
IFNA17 228 79 27 23 1 1 0.884 0.306 0.105 0.089 0.004 0.004 chr9 21222243 21233222
IFNA1 224 80 30 22 0 0 0.868 0.310 0.116 0.085 0.000 0.000 chr9 21435439 21446316
IFNA21 231 87 26 17 1 1 0.895 0.337 0.101 0.066 0.004 0.004 chr9 21160637 21171660
IFNA2 238 92 20 13 0 0 0.922 0.357 0.078 0.050 0.000 0.000 chr9 21379255 21390398
IFNA4 213 75 39 25 2 1 0.826 0.291 0.151 0.097 0.008 0.004 chr9 21181618 21192587
IFNA5 226 82 31 22 1 1 0.876 0.318 0.120 0.085 0.004 0.004 chr9 21299326 21310313
IFNA6 210 74 46 30 0 0 0.814 0.287 0.178 0.116 0.000 0.000 chr9 21345318 21355887
IFNA7 227 80 29 23 0 0 0.880 0.310 0.112 0.089 0.000 0.000 chr9 21196469 21207205
IFNA8 228 87 29 17 1 1 0.884 0.337 0.112 0.066 0.004 0.004 chr9 21404117 21415185
IFNAR1 161 53 71 35 0 0 0.624 0.205 0.275 0.136 0.000 0.000 chr21 33319970 33364864
IFNAR2 211 79 41 21 0 0 0.818 0.306 0.159 0.081 0.000 0.000 chr21 33224938 33270664
IFNB1 228 92 28 11 1 1 0.884 0.357 0.109 0.043 0.004 0.004 chr9 21072104 21082942
IFNE 224 79 33 25 0 0 0.868 0.306 0.128 0.097 0.000 0.000 chr9 21475839 21487313
IFNGR1 194 65 53 30 0 0 0.752 0.252 0.205 0.116 0.000 0.000 chr6 137192485 137224385
IFNGR2 192 61 55 37 0 0 0.744 0.236 0.213 0.143 0.000 0.000 chr21 33398413 33442516
IFNG 210 75 44 28 1 0 0.814 0.291 0.171 0.109 0.004 0.000 chr12 68149768 68164740
IFNK 223 79 33 24 1 1 0.864 0.306 0.128 0.093 0.004 0.004 chr9 27519290 27531498
IFNL1 150 39 99 58 1 0 0.581 0.151 0.384 0.225 0.004 0.000 chr19 39291407 39303673
IFNL2 210 74 44 29 2 1 0.814 0.287 0.171 0.112 0.008 0.004 chr19 39263396 39275188
IFNL3 194 59 55 38 0 0 0.752 0.229 0.213 0.147 0.000 0.000 chr19 39238553 39250006
IFNLR1 197 63 50 34 0 0 0.764 0.244 0.194 0.132 0.000 0.000 chr1 24149168 24192289
IFNW1 239 88 17 15 1 1 0.926 0.341 0.066 0.058 0.004 0.004 chr9 21135632 21146832
IFRD1 186 53 65 48 0 0 0.721 0.205 0.252 0.186 0.000 0.000 chr7 112445460 112482203
IFRD2 181 59 70 40 0 0 0.702 0.229 0.271 0.155 0.000 0.000 chr3 50282732 50297429
IFT122 177 57 66 39 0 0 0.686 0.221 0.256 0.151 0.000 0.000 chr3 129435224 129525507
IFT140 166 47 57 38 0 0 0.643 0.182 0.221 0.147 0.000 0.000 chr16 1505427 1617072
IFT172 111 18 125 71 0 0 0.430 0.070 0.484 0.275 0.000 0.000 chr2 27439377 27494743
IFT20 179 55 75 49 0 0 0.694 0.213 0.291 0.190 0.000 0.000 chr17 28323326 28340472
IFT22 204 74 46 24 1 1 0.791 0.287 0.178 0.093 0.004 0.004 chr7 101305914 101326812
IFT25 140 40 103 55 0 0 0.543 0.155 0.399 0.213 0.000 0.000 chr1 53916561 53950699
IFT27 148 31 100 69 0 0 0.574 0.120 0.388 0.267 0.000 0.000 chr22 36753211 36781119
IFT43 197 67 46 27 0 0 0.764 0.260 0.178 0.105 0.000 0.000 chr14 75980763 76088742
IFT46 189 70 56 27 0 0 0.733 0.271 0.217 0.105 0.000 0.000 chr11 118539543 118570931
IFT52 149 40 81 50 0 0 0.578 0.155 0.314 0.194 0.000 0.000 chr20 43585937 43652299