Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
IAPP 210 77 46 27 1 0 0.814 0.298 0.178 0.105 0.004 0.000 chr12 21367902 21384980
IARS1 168 56 66 35 0 0 0.651 0.217 0.256 0.136 0.000 0.000 chr9 92205207 92298697
IARS2 182 61 58 34 0 0 0.705 0.236 0.225 0.132 0.000 0.000 chr1 220089132 220153041
IBA57 207 71 40 26 1 1 0.802 0.275 0.155 0.101 0.004 0.004 chr1 228160804 228187257
IBSP 226 87 30 16 0 0 0.876 0.337 0.116 0.062 0.000 0.000 chr4 87794554 87817435
IBTK 147 43 90 49 0 0 0.570 0.167 0.349 0.190 0.000 0.000 chr6 82164987 82252744
ICA1L 164 55 80 43 0 0 0.636 0.213 0.310 0.167 0.000 0.000 chr2 202768176 202876766
ICA1 136 37 65 35 0 0 0.527 0.143 0.252 0.136 0.000 0.000 chr7 8108184 8267167
ICAM1 225 77 29 24 0 0 0.872 0.298 0.112 0.093 0.000 0.000 chr19 10266120 10291615
ICAM2 195 67 54 30 0 0 0.756 0.260 0.209 0.116 0.000 0.000 chr17 63997595 64025633
ICAM3 219 77 33 25 2 0 0.849 0.298 0.128 0.097 0.008 0.000 chr19 10328776 10344624
ICAM4 214 73 39 27 0 0 0.829 0.283 0.151 0.105 0.000 0.000 chr19 10281955 10293520
ICAM5 215 71 37 29 0 0 0.833 0.275 0.143 0.112 0.000 0.000 chr19 10284952 10301778
ICE1 181 68 70 32 0 0 0.702 0.264 0.271 0.124 0.000 0.000 chr5 5417677 5495220
ICE2 134 26 98 64 0 0 0.519 0.101 0.380 0.248 0.000 0.000 chr15 60414609 60484142
ICMT 175 48 74 49 0 0 0.678 0.186 0.287 0.190 0.000 0.000 chr1 6216193 6240964
ICOSLG 20 4 111 44 0 0 0.078 0.016 0.430 0.171 0.000 0.000 chr21 44217991 44245943
ICOS 214 74 36 25 0 0 0.829 0.287 0.140 0.097 0.000 0.000 chr2 203931763 203966577
ID1 148 30 102 68 0 0 0.574 0.116 0.395 0.264 0.000 0.000 chr20 31600289 31611510
ID2 196 60 55 38 0 0 0.760 0.233 0.213 0.147 0.000 0.000 chr2 8677056 8689461
ID3 216 74 42 31 0 0 0.837 0.287 0.163 0.120 0.000 0.000 chr1 23552926 23564501
ID4 234 87 23 17 0 0 0.907 0.337 0.089 0.066 0.000 0.000 chr6 19832370 19847197
IDE 156 46 85 53 0 0 0.605 0.178 0.329 0.205 0.000 0.000 chr10 92446684 92579093
IDH1 178 58 72 42 0 0 0.690 0.225 0.279 0.163 0.000 0.000 chr2 208231229 208260071
IDH2 219 73 36 29 1 1 0.849 0.283 0.140 0.112 0.004 0.004 chr15 90078045 90107468
IDH3A 192 71 58 29 0 0 0.744 0.275 0.225 0.112 0.000 0.000 chr15 78144362 78176945
IDH3B 219 78 37 25 1 1 0.849 0.302 0.143 0.097 0.004 0.004 chr20 2653395 2669216
IDH3G 87 22 163 75 0 0 0.337 0.085 0.632 0.291 0.000 0.000 chrX 153780768 153799375
IDI1 218 78 39 26 0 0 0.845 0.302 0.151 0.101 0.000 0.000 chr10 1034419 1054119
IDI2 216 72 40 31 0 0 0.837 0.279 0.155 0.120 0.000 0.000 chr10 1013910 1030859
IDNK 165 45 84 54 0 0 0.640 0.174 0.326 0.209 0.000 0.000 chr9 83618143 83649123
IDO1 210 73 46 31 0 0 0.814 0.283 0.178 0.120 0.000 0.000 chr8 39908891 39933790
IDO2 179 55 57 36 0 0 0.694 0.213 0.221 0.140 0.000 0.000 chr8 39929651 40021392
IDS 86 22 168 82 0 0 0.333 0.085 0.651 0.318 0.000 0.000 chrX 149471988 149510306
IDUA 213 67 35 29 0 0 0.826 0.260 0.136 0.112 0.000 0.000 chr4 982044 1009564
IER2 164 33 88 66 0 0 0.636 0.128 0.341 0.256 0.000 0.000 chr19 13145411 13159911
IER3IP1 188 64 59 35 0 0 0.729 0.248 0.229 0.136 0.000 0.000 chr18 47147834 47181364
IER3 224 78 33 26 0 0 0.868 0.302 0.128 0.101 0.000 0.000 chr6 30738199 30749547
IER5L 212 72 43 30 1 1 0.822 0.279 0.167 0.116 0.004 0.004 chr9 129170552 129183261
IER5 186 49 70 54 0 0 0.721 0.190 0.271 0.209 0.000 0.000 chr1 181083700 181097900
IFFO1 218 76 36 26 0 0 0.845 0.295 0.140 0.101 0.000 0.000 chr12 6534539 6561042
IFFO2 187 55 54 38 0 0 0.725 0.213 0.209 0.147 0.000 0.000 chr1 18899280 18961676
IFI16 159 50 87 48 0 0 0.616 0.194 0.337 0.186 0.000 0.000 chr1 159004907 159060151
IFI27L1 223 77 29 23 1 1 0.864 0.298 0.112 0.089 0.004 0.004 chr14 94076310 94107709
IFI27L2 216 81 39 22 1 0 0.837 0.314 0.151 0.085 0.004 0.000 chr14 94122781 94134604
IFI27 233 89 23 14 0 0 0.903 0.345 0.089 0.054 0.000 0.000 chr14 94105736 94121690
IFI30 174 42 79 58 1 1 0.674 0.163 0.306 0.225 0.004 0.004 chr19 18168813 18183117
IFI35 169 45 78 51 1 0 0.655 0.174 0.302 0.198 0.004 0.000 chr17 43001784 43019456
IFI44L 214 80 34 20 0 0 0.829 0.310 0.132 0.078 0.000 0.000 chr1 78615448 78651145
IFI44 223 81 30 20 2 1 0.864 0.314 0.116 0.078 0.008 0.004 chr1 78644831 78669073