Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view AP2A2 133 33 80 38 0 0 0.516 0.128 0.310 0.147 0.000 0.000 chr11 920870 1017240
view AP2B1 185 68 60 32 0 0 0.717 0.264 0.233 0.124 0.000 0.000 chr17 35582322 35731413
view AP2M1 210 76 45 26 0 0 0.814 0.295 0.174 0.101 0.000 0.000 chr3 184169855 184189091
view AP2S1 211 69 41 30 0 0 0.818 0.267 0.159 0.116 0.000 0.000 chr19 46833167 46855846
view AP3B1 112 32 101 54 0 0 0.434 0.124 0.391 0.209 0.000 0.000 chr5 77997326 78299698
view AP3B2 183 62 67 40 0 0 0.709 0.240 0.260 0.155 0.000 0.000 chr15 82654281 82714875
view AP3D1 202 65 31 19 0 0 0.783 0.252 0.120 0.074 0.000 0.000 chr19 2095988 2156566
view AP3M1 166 57 77 40 0 0 0.643 0.221 0.298 0.155 0.000 0.000 chr10 74115255 74155828
view AP3M2 195 67 57 32 1 1 0.756 0.260 0.221 0.124 0.004 0.004 chr8 42148063 42176183
view AP3S1 188 62 56 34 0 0 0.729 0.240 0.217 0.132 0.000 0.000 chr5 115836935 115919081
view AP3S2 155 42 72 43 0 0 0.601 0.163 0.279 0.167 0.000 0.000 chr15 89825599 89898994
view AP4B1 216 78 39 25 0 0 0.837 0.302 0.151 0.097 0.000 0.000 chr1 113889194 113909799
view AP4E1 195 69 56 31 0 0 0.756 0.267 0.217 0.120 0.000 0.000 chr15 50903683 51010895
view AP4M1 207 73 47 29 1 0 0.802 0.283 0.182 0.112 0.004 0.000 chr7 100096643 100114039
view AP4S1 172 54 62 33 0 0 0.667 0.209 0.240 0.128 0.000 0.000 chr14 31020649 31101450
view AP5B1 211 77 46 27 0 0 0.818 0.298 0.178 0.105 0.000 0.000 chr11 65768898 65785976
view AP5M1 139 39 104 62 0 0 0.539 0.151 0.403 0.240 0.000 0.000 chr14 57263971 57303742
view AP5S1 205 66 47 34 0 0 0.795 0.256 0.182 0.132 0.000 0.000 chr20 3815547 3833838
view AP5Z1 169 45 67 44 0 0 0.655 0.174 0.260 0.171 0.000 0.000 chr7 4770623 4799397
view APAF1 182 61 63 37 1 1 0.705 0.236 0.244 0.143 0.004 0.004 chr12 98640290 98740433
view APBA1 104 17 100 60 0 0 0.403 0.066 0.388 0.233 0.000 0.000 chr9 69422532 69677371
view APBA2 101 21 86 51 0 0 0.391 0.081 0.333 0.198 0.000 0.000 chr15 28880974 29123315
view APBA3 224 78 29 22 0 0 0.868 0.302 0.112 0.085 0.000 0.000 chr19 3745772 3766692
view APBB1IP 178 58 51 30 0 0 0.690 0.225 0.198 0.116 0.000 0.000 chr10 26433341 26572803
view APBB1 207 62 36 31 0 0 0.802 0.240 0.140 0.120 0.000 0.000 chr11 6390125 6424094
view APBB2 95 16 82 48 0 0 0.368 0.062 0.318 0.186 0.000 0.000 chr4 40805027 41219542
view APBB3 205 70 52 34 0 0 0.795 0.271 0.202 0.132 0.000 0.000 chr5 140553268 140569598
view APC2 174 43 64 46 0 0 0.674 0.167 0.248 0.178 0.000 0.000 chr19 1445121 1478244
view APCDD1L 187 61 53 33 0 0 0.725 0.236 0.205 0.128 0.000 0.000 chr20 58454101 58520399
view APCDD1 210 73 39 26 0 0 0.814 0.283 0.151 0.101 0.000 0.000 chr18 10449635 10494949
view APCS 210 76 45 27 2 1 0.814 0.295 0.174 0.105 0.008 0.004 chr1 159582826 159593865
view APC 146 44 95 53 0 0 0.566 0.171 0.368 0.205 0.000 0.000 chr5 112732885 112851239
view APEH 158 46 94 56 0 0 0.612 0.178 0.364 0.217 0.000 0.000 chr3 49669351 49688971
view APELA 216 74 38 29 0 0 0.837 0.287 0.147 0.112 0.000 0.000 chr4 164872178 164902527
view APEX1 234 93 24 12 0 0 0.907 0.360 0.093 0.047 0.000 0.000 chr14 20450226 20462767
view APEX2 87 21 170 83 0 0 0.337 0.081 0.659 0.322 0.000 0.000 chrX 54995363 55014057
view APH1A 219 81 38 24 1 0 0.849 0.314 0.147 0.093 0.004 0.000 chr1 150260404 150274016
view APH1B 210 76 42 24 1 1 0.814 0.295 0.163 0.093 0.004 0.004 chr15 63272605 63314126
view API5 191 64 45 26 0 0 0.740 0.248 0.174 0.101 0.000 0.000 chr11 43306996 43349529
view APIP 177 55 73 48 1 1 0.686 0.213 0.283 0.186 0.004 0.004 chr11 34877295 34921379
view APLF 87 12 141 81 0 0 0.337 0.047 0.547 0.314 0.000 0.000 chr2 68462585 68585162
view APLNR 214 72 43 33 0 0 0.829 0.279 0.167 0.128 0.000 0.000 chr11 57228591 57242250
view APLN 95 31 156 71 1 0 0.368 0.120 0.605 0.275 0.004 0.000 chrX 129640259 129659956
view APLP1 127 30 119 68 0 0 0.492 0.116 0.461 0.264 0.000 0.000 chr19 35863574 35884792
view APLP2 136 45 88 41 0 0 0.527 0.174 0.341 0.159 0.000 0.000 chr11 130064894 130149805
view APMAP 144 34 94 62 0 0 0.558 0.132 0.364 0.240 0.000 0.000 chr20 24957925 24997751
view APOA1 223 80 33 23 0 0 0.864 0.310 0.128 0.089 0.000 0.000 chr11 116830751 116842622
view APOA2 214 79 43 25 1 1 0.829 0.306 0.167 0.097 0.004 0.004 chr1 161217292 161228628
view APOA4 230 83 22 16 0 0 0.891 0.322 0.085 0.062 0.000 0.000 chr11 116815700 116828304
view APOA5 237 89 19 14 0 0 0.919 0.345 0.074 0.054 0.000 0.000 chr11 116784367 116796879