Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view BOC 192 62 43 31 0 0 0.744 0.240 0.167 0.120 0.000 0.000 chr3 113206557 113292459
view BOD1L1 128 26 97 65 0 0 0.496 0.101 0.376 0.252 0.000 0.000 chr4 13563738 13632725
view BOD1L2 233 94 24 10 0 0 0.903 0.364 0.093 0.039 0.000 0.000 chr18 57142087 57155410
view BOD1 207 71 48 31 1 1 0.802 0.275 0.186 0.120 0.004 0.004 chr5 173602145 173621650
view BOK 216 73 34 24 0 0 0.837 0.283 0.132 0.093 0.000 0.000 chr2 241553745 241579131
view BOLA1 179 44 73 56 0 0 0.694 0.171 0.283 0.217 0.000 0.000 chr1 149894568 149905795
view BOLA2B 127 40 106 54 1 0 0.492 0.155 0.411 0.209 0.004 0.000 chr16 30187932 30198666
view BOLA2 87 47 40 30 128 26 0.337 0.182 0.155 0.116 0.496 0.101 chr16 29448593 29459351
view BOLA3 217 75 39 29 0 0 0.841 0.291 0.151 0.112 0.000 0.000 chr2 74130400 74152912
view BOLL 163 61 86 39 0 0 0.632 0.236 0.333 0.151 0.000 0.000 chr2 197721890 197790319
view BOP1 198 55 44 37 0 0 0.767 0.213 0.171 0.143 0.000 0.000 chr8 144257045 144296438
view BORA 193 63 57 35 0 0 0.748 0.244 0.221 0.136 0.000 0.000 chr13 72722923 72761196
view BORCS5 0 0 1 0 0 0 0.000 0.000 0.004 0.000 0.000 0.000 chr12 12352078 12476233
view BORCS6 207 71 46 30 0 0 0.802 0.275 0.178 0.116 0.000 0.000 chr17 8183345 8195180
view BORCS7 226 87 29 15 0 0 0.876 0.337 0.112 0.058 0.000 0.000 chr10 102849259 102869961
view BORCS8 213 70 41 31 0 0 0.826 0.271 0.159 0.120 0.000 0.000 chr19 19171906 19197152
view BPGM 180 63 66 38 0 0 0.698 0.244 0.256 0.147 0.000 0.000 chr7 134641853 134684816
view BPHL 174 55 66 34 0 0 0.674 0.213 0.256 0.132 0.000 0.000 chr6 3113711 3158578
view BPIFA1 190 63 62 36 0 0 0.736 0.244 0.240 0.140 0.000 0.000 chr20 33230996 33248306
view BPIFA2 188 61 59 36 0 0 0.729 0.236 0.229 0.140 0.000 0.000 chr20 33163159 33186412
view BPIFA3 207 71 50 33 0 0 0.802 0.275 0.194 0.128 0.000 0.000 chr20 33212352 33232806
view BPIFB1 193 55 58 45 0 0 0.748 0.213 0.225 0.174 0.000 0.000 chr20 33278214 33314871
view BPIFB2 193 57 50 34 0 0 0.748 0.221 0.194 0.132 0.000 0.000 chr20 33002704 33028703
view BPIFB3 186 53 60 42 0 0 0.721 0.205 0.233 0.163 0.000 0.000 chr20 33048903 33078847
view BPIFB4 171 48 70 49 0 0 0.663 0.186 0.271 0.190 0.000 0.000 chr20 33074643 33116751
view BPIFB6 191 58 62 42 0 0 0.740 0.225 0.240 0.163 0.000 0.000 chr20 33026648 33049047
view BPIFC 210 70 32 20 0 0 0.814 0.271 0.124 0.078 0.000 0.000 chr22 32408845 32469446
view BPI 212 75 35 25 0 0 0.822 0.291 0.136 0.097 0.000 0.000 chr20 38299156 38342505
view BPNT1 211 73 39 25 0 0 0.818 0.283 0.151 0.097 0.000 0.000 chr1 220052482 220094788
view BPNT2 177 67 64 24 0 0 0.686 0.260 0.248 0.093 0.000 0.000 chr8 56952931 56998867
view BPTF 136 41 89 46 0 0 0.527 0.159 0.345 0.178 0.000 0.000 chr17 67820503 67989378
view BPY2B 14 4 82 30 0 0 0.054 0.016 0.318 0.116 0.000 0.000 chrY 24613004 24644207
view BPY2C 10 0 66 22 0 0 0.039 0.000 0.256 0.085 0.000 0.000 chrY 25025901 25057104
view BPY2 0 0 53 10 0 0 0.000 0.000 0.205 0.039 0.000 0.000 chrY 22979263 23010465
view BRAF 94 15 129 71 0 0 0.364 0.058 0.500 0.275 0.000 0.000 chr7 140714337 140929929
view BRAF 97 15 124 69 0 0 0.376 0.058 0.481 0.267 0.000 0.000 chr7 140725665 140929929
view BRAP 181 66 64 30 0 0 0.702 0.256 0.248 0.116 0.000 0.000 chr12 111637146 111690956
view BRAT1 211 74 40 24 0 0 0.818 0.287 0.155 0.093 0.000 0.000 chr7 2532810 2560524
view BRCA1 137 34 103 58 0 0 0.531 0.132 0.399 0.225 0.000 0.000 chr17 43039295 43130364
view BRCA2 198 70 45 32 0 0 0.767 0.271 0.174 0.124 0.000 0.000 chr13 32310508 32405268
view BRCC3 63 14 182 82 0 0 0.244 0.054 0.705 0.318 0.000 0.000 chrX 155066508 155128077
view BRD1 128 35 97 51 0 0 0.496 0.136 0.376 0.198 0.000 0.000 chr22 49768283 49832873
view BRD2 234 93 21 9 1 1 0.907 0.360 0.081 0.035 0.004 0.004 chr6 32963594 32986501
view BRD3OS 166 42 79 51 0 0 0.643 0.163 0.306 0.198 0.000 0.000 chr9 134020481 134036587
view BRD3 166 45 75 47 0 0 0.643 0.174 0.291 0.182 0.000 0.000 chr9 134025305 134073026
view BRD4 103 16 112 66 0 0 0.399 0.062 0.434 0.256 0.000 0.000 chr19 15230519 15337539
view BRD7 200 72 43 26 1 1 0.775 0.279 0.167 0.101 0.004 0.004 chr16 50310957 50373988
view BRD8 188 62 62 36 0 0 0.729 0.240 0.240 0.140 0.000 0.000 chr5 138134770 138183630
view BRD9 181 51 61 42 0 0 0.702 0.198 0.236 0.163 0.000 0.000 chr5 858741 897801
view BRDT 158 49 85 51 0 0 0.612 0.190 0.329 0.198 0.000 0.000 chr1 91944401 92019421