Joint Open Genome and Omics Platform (JoGo)

Genic Haplotype Summary

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Chr

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View	Genename	ALL BOTH # of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	JPT BOTH # of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database	ALL SINGLE # of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	ALL BOTH # of samples with two haploids were completely assembled/# of total samples	JPT BOTH # of JPT samples with two haploids were completely assembled/# of total JPT samples	ALL SINGLE # of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	JPT SINGLE # of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database	ALL MULTI # of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database	Chr	Start	End
view	BLK	153	35	73	46	0	0.593	0.136	0.283	0.178	0.000	chr8	11489387	11569599
view	BLMH	148	35	98	64	0	0.574	0.136	0.380	0.248	0.000	chr17	30243203	30296944
view	BLM	139	41	82	47	0	0.539	0.159	0.318	0.182	0.000	chr15	90712346	90821166
view	BLNK	160	48	65	42	0	0.620	0.186	0.252	0.163	0.000	chr10	96184171	96276569
view	BLOC1S1	204	68	50	34	0	0.791	0.264	0.194	0.132	0.000	chr12	55711046	55724703
view	BLOC1S2	188	58	63	42	0	0.729	0.225	0.244	0.163	0.000	chr10	100268293	100291680
view	BLOC1S3	212	72	43	30	0	0.822	0.279	0.167	0.116	0.000	chr19	45173784	45186800
view	BLOC1S4	228	84	28	19	0	0.884	0.326	0.109	0.074	0.000	chr4	6711174	6722664
view	BLOC1S5	181	51	63	44	0	0.702	0.198	0.244	0.171	0.000	chr6	8008567	8069389
view	BLOC1S6	180	59	71	41	0	0.698	0.229	0.275	0.159	0.000	chr15	45582379	45614708
view	BLTP1	167	55	72	38	0	0.647	0.213	0.279	0.147	0.000	chr4	122147331	122367752
view	BLTP2	154	49	89	45	0	0.597	0.190	0.345	0.174	0.000	chr17	28609446	28650158
view	BLTP3A	155	48	73	39	0	0.601	0.186	0.283	0.151	0.000	chr6	34787083	34882514
view	BLTP3B	93	8	136	85	0	0.360	0.031	0.527	0.329	0.000	chr12	100032072	100147874
view	BLVRA	206	74	45	27	0	0.798	0.287	0.174	0.105	0.000	chr7	43753680	43812342
view	BLVRB	180	45	69	52	0	0.698	0.174	0.267	0.202	0.000	chr19	40442768	40470745
view	BLZF1	182	53	66	45	0	0.705	0.205	0.256	0.174	0.000	chr1	169363195	169393305
view	BMAL1	156	48	66	38	0	0.605	0.186	0.256	0.147	0.000	chr11	13272790	13392266
view	BMAL2	154	56	67	34	0	0.597	0.217	0.260	0.132	0.000	chr12	27327836	27430286
view	BMERB1	145	36	69	45	0	0.562	0.140	0.267	0.174	0.000	chr16	15429588	15593259
view	BMF	206	75	48	27	0	0.798	0.291	0.186	0.105	0.000	chr15	40082890	40113879
view	BMI1	122	25	127	74	0	0.473	0.097	0.492	0.287	0.000	chr10	22316099	22336484
view	BMP10	207	76	43	21	0	0.802	0.295	0.167	0.081	0.000	chr2	68855909	68876397
view	BMP15	82	17	174	86	0	0.318	0.066	0.674	0.333	0.000	chrX	50905735	50921641
view	BMP1	208	71	38	23	0	0.806	0.275	0.147	0.089	0.000	chr8	22160372	22206482
view	BMP1	203	66	43	29	0	0.787	0.256	0.167	0.112	0.000	chr8	22160372	22217326
view	BMP2K	101	37	130	61	0	0.391	0.143	0.504	0.236	0.000	chr4	78771350	78921365
view	BMP2	231	88	23	13	0	0.895	0.341	0.089	0.050	0.000	chr20	6762686	6785246
view	BMP3	190	60	59	37	0	0.736	0.233	0.229	0.143	0.000	chr4	81025708	81062627
view	BMP4	226	83	28	18	0	0.876	0.322	0.109	0.070	0.000	chr14	53944736	53961825
view	BMP5	159	45	61	37	0	0.616	0.174	0.236	0.143	0.000	chr6	55748653	55880590
view	BMP6	153	40	65	46	0	0.593	0.155	0.252	0.178	0.000	chr6	7721099	7886728
view	BMP7	135	23	92	64	0	0.523	0.089	0.357	0.248	0.000	chr20	57163753	57271641
view	BMP8A	180	59	58	32	0	0.698	0.229	0.225	0.124	0.000	chr1	39486636	39534869
view	BMP8B	214	81	40	22	1	0.829	0.314	0.155	0.085	0.004	chr1	39752182	39793865
view	BMPER	115	22	82	50	0	0.446	0.085	0.318	0.194	0.000	chr7	33900539	34161427
view	BMPR1A	138	31	84	54	0	0.535	0.120	0.326	0.209	0.000	chr10	86751619	86932969
view	BMPR1B	112	23	75	52	0	0.434	0.089	0.291	0.202	0.000	chr4	94752955	95163448
view	BMPR2	111	17	112	69	0	0.430	0.066	0.434	0.267	0.000	chr2	202371327	202572749
view	BMS1	193	62	58	39	0	0.748	0.240	0.225	0.151	0.000	chr10	42777795	42839937
view	BMT2	102	11	134	82	0	0.395	0.043	0.519	0.318	0.000	chr7	112814147	112944875
view	BMX	44	0	196	97	0	0.171	0.000	0.760	0.376	0.000	chrX	15495807	15561519
view	BNC1	151	39	88	55	0	0.585	0.151	0.341	0.213	0.000	chr15	83250884	83289664
view	BNC2	87	20	86	46	0	0.337	0.078	0.333	0.178	0.000	chr9	16404503	16875670
view	BNIP1	175	48	72	48	0	0.678	0.186	0.279	0.186	0.000	chr5	173139531	173169387
view	BNIP2	205	69	46	32	0	0.795	0.267	0.178	0.124	0.000	chr15	59654146	59694320
view	BNIP3L	202	72	50	30	0	0.783	0.279	0.194	0.116	0.000	chr8	26378054	26418127
view	BNIP3	218	80	34	19	0	0.845	0.310	0.132	0.074	0.000	chr10	131962684	131986923
view	BNIP5	211	71	37	28	0	0.818	0.275	0.143	0.109	0.000	chr6	36310761	36341888
view	BNIPL	180	51	76	52	0	0.698	0.198	0.295	0.202	0.000	chr1	151031586	151052720

Genic Haplotype Summary

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