Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view C17orf78 220 77 36 26 0 0 0.853 0.298 0.140 0.101 0.000 0.000 chr17 37370985 37397708
view C17orf80 191 59 65 44 0 0 0.740 0.229 0.252 0.171 0.000 0.000 chr17 73227433 73253959
view C17orf98 215 76 35 22 0 0 0.833 0.295 0.136 0.085 0.000 0.000 chr17 38830086 38846438
view C17orf99 222 74 29 24 1 1 0.860 0.287 0.112 0.093 0.004 0.004 chr17 78141385 78171297
view C18orf21 199 66 56 37 1 0 0.771 0.256 0.217 0.143 0.004 0.000 chr18 35967679 35984278
view C18orf32 219 80 37 23 0 0 0.849 0.310 0.143 0.089 0.000 0.000 chr18 49472243 49492234
view C18orf54 167 49 81 47 0 0 0.647 0.190 0.314 0.182 0.000 0.000 chr18 54352906 54387034
view C18orf63 185 67 61 31 0 0 0.717 0.260 0.236 0.120 0.000 0.000 chr18 74310839 74364189
view C19orf12 208 70 42 29 0 0 0.806 0.271 0.163 0.112 0.000 0.000 chr19 29693937 29720261
view C19orf18 203 68 45 29 0 0 0.787 0.264 0.174 0.112 0.000 0.000 chr19 57953437 57979534
view C19orf25 200 57 52 42 0 0 0.775 0.221 0.202 0.163 0.000 0.000 chr19 1468201 1484215
view C19orf33 202 70 53 32 0 0 0.783 0.271 0.205 0.124 0.000 0.000 chr19 38299251 38310006
view C19orf38 191 69 61 33 0 0 0.740 0.267 0.236 0.128 0.000 0.000 chr19 10843415 10874790
view C19orf44 164 37 77 52 0 0 0.636 0.143 0.298 0.202 0.000 0.000 chr19 16491394 16526352
view C19orf47 191 64 56 34 0 0 0.740 0.248 0.217 0.132 0.000 0.000 chr19 40314536 40353397
view C19orf53 216 74 35 26 3 1 0.837 0.287 0.136 0.101 0.012 0.004 chr19 13769456 13783773
view C19orf67 196 59 56 40 0 0 0.760 0.229 0.217 0.155 0.000 0.000 chr19 14076624 14090783
view C19orf73 186 53 69 51 2 0 0.721 0.205 0.267 0.198 0.008 0.000 chr19 49113402 49124143
view C19orf81 207 60 42 36 0 0 0.802 0.233 0.163 0.140 0.000 0.000 chr19 50644445 50664306
view C19orf84 222 71 31 29 0 0 0.860 0.275 0.120 0.112 0.000 0.000 chr19 51383289 51395591
view C19orf85 200 60 47 35 0 0 0.775 0.233 0.182 0.136 0.000 0.000 chr19 55458001 55469751
view C1D 183 53 71 49 0 0 0.709 0.205 0.275 0.190 0.000 0.000 chr2 68036130 68068004
view C1GALT1C1L 197 59 57 43 1 0 0.764 0.229 0.221 0.167 0.004 0.000 chr2 43670151 43681429
view C1GALT1C1 99 38 154 63 1 1 0.384 0.147 0.597 0.244 0.004 0.004 chrX 120620674 120635054
view C1GALT1 195 70 51 28 0 0 0.756 0.271 0.198 0.109 0.000 0.000 chr7 7177544 7253616
view C1QA 215 77 38 26 3 0 0.833 0.298 0.147 0.101 0.012 0.000 chr1 22631628 22644678
view C1QBP 203 64 50 37 0 0 0.787 0.248 0.194 0.143 0.000 0.000 chr17 5427777 5444155
view C1QB 214 79 43 25 1 1 0.829 0.306 0.167 0.097 0.004 0.004 chr1 22648236 22666637
view C1QC 224 80 33 24 0 0 0.868 0.310 0.128 0.093 0.000 0.000 chr1 22638633 22653108
view C1QL1 203 66 44 31 2 0 0.787 0.256 0.171 0.120 0.008 0.000 chr17 44954693 44973303
view C1QL2 205 69 52 35 1 1 0.795 0.267 0.202 0.136 0.004 0.004 chr2 119151243 119163751
view C1QL3 229 86 27 17 0 0 0.888 0.333 0.105 0.066 0.000 0.000 chr10 16508734 16526879
view C1QL4 149 34 103 65 0 0 0.578 0.132 0.399 0.252 0.000 0.000 chr12 49327409 49342188
view C1QTNF12 163 47 72 37 0 0 0.632 0.182 0.279 0.143 0.000 0.000 chr1 1237453 1251722
view C1QTNF1 195 69 55 30 0 0 0.756 0.267 0.213 0.116 0.000 0.000 chr17 79019169 79054788
view C1QTNF2 225 83 28 18 1 1 0.872 0.322 0.109 0.070 0.004 0.004 chr5 160342754 160375626
view C1QTNF3 206 77 48 24 0 0 0.798 0.298 0.186 0.093 0.000 0.000 chr5 34012858 34048213
view C1QTNF4 203 72 54 32 0 0 0.787 0.279 0.209 0.124 0.000 0.000 chr11 47584667 47599411
view C1QTNF5 193 59 55 38 0 0 0.748 0.229 0.213 0.147 0.000 0.000 chr11 119333942 119345883
view C1QTNF6 222 75 34 28 1 1 0.860 0.291 0.132 0.109 0.004 0.004 chr22 37175166 37193247
view C1QTNF7 221 82 36 22 0 0 0.857 0.318 0.140 0.085 0.000 0.000 chr4 15423033 15451167
view C1QTNF8 197 60 48 33 0 0 0.764 0.233 0.186 0.128 0.000 0.000 chr16 1083226 1101244
view C1QTNF9B 211 68 42 33 0 0 0.818 0.264 0.163 0.128 0.000 0.000 chr13 23886099 23902502
view C1QTNF9 232 88 23 14 0 0 0.899 0.341 0.089 0.054 0.000 0.000 chr13 24304580 24327531
view C1RL 218 80 36 22 1 0 0.845 0.310 0.140 0.085 0.004 0.000 chr12 7089554 7114214
view C1R 160 57 79 37 0 0 0.620 0.221 0.306 0.143 0.000 0.000 chr12 7075219 7097445
view C1S 184 57 70 45 0 0 0.713 0.221 0.271 0.174 0.000 0.000 chr12 7055718 7076032
view C1orf100 225 79 14 11 0 0 0.872 0.306 0.054 0.043 0.000 0.000 chr1 244347635 244394663
view C1orf105 159 41 78 53 0 0 0.616 0.159 0.302 0.205 0.000 0.000 chr1 172415685 172473829
view C1orf109 215 76 40 26 0 0 0.833 0.295 0.155 0.101 0.000 0.000 chr1 37676570 37695529