Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
C11orf91 239 90 16 13 2 1 0.926 0.349 0.062 0.050 0.008 0.004 chr11 33693261 33705826
C11orf96 218 81 38 23 1 0 0.845 0.314 0.147 0.089 0.004 0.000 chr11 43937637 43948878
C11orf97 216 76 39 27 0 0 0.837 0.295 0.151 0.105 0.000 0.000 chr11 94507461 94537123
C11orf98 190 57 66 46 0 0 0.736 0.221 0.256 0.178 0.000 0.000 chr11 62657817 62670210
C12orf40 179 60 57 30 0 0 0.694 0.233 0.221 0.116 0.000 0.000 chr12 39621183 39726914
C12orf42 130 42 76 36 0 0 0.504 0.163 0.295 0.140 0.000 0.000 chr12 103296955 103500968
C12orf43 208 77 47 26 1 1 0.806 0.298 0.182 0.101 0.004 0.004 chr12 120995486 121021487
C12orf4 109 23 125 69 0 0 0.422 0.089 0.484 0.267 0.000 0.000 chr12 4482735 4543469
C12orf50 135 37 105 57 0 0 0.523 0.143 0.407 0.221 0.000 0.000 chr12 87975035 88034401
C12orf54 217 79 39 25 1 1 0.841 0.306 0.151 0.097 0.004 0.004 chr12 48477498 48501524
C12orf56 155 47 63 37 0 0 0.601 0.182 0.244 0.143 0.000 0.000 chr12 64259762 64395758
C12orf57 213 74 41 28 1 0 0.826 0.287 0.159 0.109 0.004 0.000 chr12 6939022 6951002
C12orf60 193 61 58 39 0 0 0.748 0.236 0.225 0.151 0.000 0.000 chr12 14798670 14829415
C12orf71 211 77 45 27 0 0 0.818 0.298 0.174 0.105 0.000 0.000 chr12 27076057 27087578
C12orf75 203 73 46 26 0 0 0.787 0.283 0.178 0.101 0.000 0.000 chr12 105325691 105376518
C12orf76 177 55 74 45 0 0 0.686 0.213 0.287 0.174 0.000 0.000 chr12 110036177 110053522
C13orf42 225 82 26 19 0 0 0.872 0.318 0.101 0.074 0.000 0.000 chr13 51077119 51116274
C13orf46 206 63 41 32 0 0 0.798 0.244 0.159 0.124 0.000 0.000 chr13 113948705 113979076
C14orf119 221 82 34 21 1 1 0.857 0.318 0.132 0.081 0.004 0.004 chr14 23090505 23105456
C14orf132 185 58 56 36 0 0 0.717 0.225 0.217 0.140 0.000 0.000 chr14 96034362 96098971
C14orf180 216 74 36 25 0 0 0.837 0.287 0.140 0.097 0.000 0.000 chr14 104574764 104595515
C14orf28 168 56 78 38 0 0 0.651 0.217 0.302 0.147 0.000 0.000 chr14 44892275 44912257
C14orf39 146 59 88 32 0 0 0.566 0.229 0.341 0.124 0.000 0.000 chr14 60430956 60491063
C14orf93 171 39 63 46 0 0 0.663 0.151 0.244 0.178 0.000 0.000 chr14 22980894 23015143
C15orf39 172 57 79 45 0 0 0.667 0.221 0.306 0.174 0.000 0.000 chr15 75196882 75217169
C15orf40 202 63 46 35 0 0 0.783 0.244 0.178 0.136 0.000 0.000 chr15 82989817 83016639
C15orf48 209 73 46 30 0 0 0.810 0.283 0.178 0.116 0.000 0.000 chr15 45425610 45438340
C15orf61 207 81 49 22 0 0 0.802 0.314 0.190 0.085 0.000 0.000 chr15 67516131 67535146
C15orf62 199 63 57 41 1 0 0.771 0.244 0.221 0.159 0.004 0.000 chr15 40764980 40777449
C16orf46 202 75 53 27 0 0 0.783 0.291 0.205 0.105 0.000 0.000 chr16 81055980 81082238
C16orf54 154 38 99 64 0 0 0.597 0.147 0.384 0.248 0.000 0.000 chr16 29737463 29750990
C16orf74 204 66 48 34 0 0 0.791 0.256 0.186 0.132 0.000 0.000 chr16 85702517 85756096
C16orf78 177 55 70 42 0 0 0.686 0.213 0.271 0.163 0.000 0.000 chr16 49368804 49404431
C16orf82 220 85 34 19 0 0 0.853 0.329 0.132 0.074 0.000 0.000 chr16 27061927 27074166
C16orf86 137 25 114 75 0 0 0.531 0.097 0.442 0.291 0.000 0.000 chr16 67661814 67673755
C16orf87 131 25 101 62 0 0 0.508 0.097 0.391 0.240 0.000 0.000 chr16 46791603 46836180
C16orf89 215 71 35 26 0 0 0.833 0.275 0.136 0.101 0.000 0.000 chr16 5039122 5070956
C16orf90 222 82 32 20 0 0 0.860 0.318 0.124 0.078 0.000 0.000 chr16 3488484 3500489
C16orf92 175 51 82 53 0 0 0.678 0.198 0.318 0.205 0.000 0.000 chr16 30018198 30029704
C16orf95 228 83 26 19 0 0 0.884 0.322 0.101 0.074 0.000 0.000 chr16 87297814 87322392
C16orf96 138 29 95 58 0 0 0.535 0.112 0.368 0.225 0.000 0.000 chr16 4551340 4605758
C17orf100 216 81 40 22 1 1 0.837 0.314 0.155 0.085 0.004 0.004 chr17 6646762 6658476
C17orf107 220 80 35 22 0 0 0.853 0.310 0.136 0.085 0.000 0.000 chr17 4894536 4907934
C17orf113 149 41 100 58 0 0 0.578 0.159 0.388 0.225 0.000 0.000 chr17 42033232 42055601
C17orf114 212 76 42 26 0 0 0.822 0.295 0.163 0.101 0.000 0.000 chr17 4796159 4807328
C17orf49 190 61 64 40 0 0 0.736 0.236 0.248 0.155 0.000 0.000 chr17 7009782 7022520
C17orf50 203 64 51 37 1 1 0.787 0.248 0.198 0.143 0.004 0.004 chr17 35755887 35770079
C17orf58 205 66 48 36 0 0 0.795 0.256 0.186 0.140 0.000 0.000 chr17 67986099 68001469
C17orf67 145 37 102 60 0 0 0.562 0.143 0.395 0.233 0.000 0.000 chr17 56786913 56838920
C17orf75 182 55 72 47 0 0 0.705 0.213 0.279 0.182 0.000 0.000 chr17 32323441 32347173