Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
BTG2 217 81 33 19 3 0 0.841 0.314 0.128 0.074 0.012 0.000 chr1 203300519 203314602
BTG3 200 69 55 34 0 0 0.775 0.267 0.213 0.132 0.000 0.000 chr21 17588653 17617901
BTG4 176 62 73 36 2 0 0.682 0.240 0.283 0.140 0.008 0.000 chr11 111489815 111517386
BTK 88 22 163 76 0 0 0.341 0.085 0.632 0.295 0.000 0.000 chrX 101344450 101391191
BTLA 171 58 74 38 0 0 0.663 0.225 0.287 0.147 0.000 0.000 chr3 112458966 112504472
BTN1A1 206 67 52 38 0 0 0.798 0.260 0.202 0.147 0.000 0.000 chr6 26495303 26515425
BTN2A1 209 82 46 21 0 0 0.810 0.318 0.178 0.081 0.000 0.000 chr6 26452955 26474637
BTN2A2 194 64 59 38 1 1 0.752 0.248 0.229 0.147 0.004 0.004 chr6 26378108 26399874
BTN3A1 196 63 60 40 0 0 0.760 0.244 0.233 0.155 0.000 0.000 chr6 26397275 26420208
BTN3A2 190 61 62 39 0 0 0.736 0.236 0.240 0.151 0.000 0.000 chr6 26360198 26383312
BTN3A3 204 73 49 28 0 0 0.791 0.283 0.190 0.109 0.000 0.000 chr6 26435504 26458415
BTNL2 226 86 28 15 1 1 0.876 0.333 0.109 0.058 0.004 0.004 chr6 32388339 32412181
BTNL3 102 18 128 74 0 0 0.395 0.070 0.496 0.287 0.000 0.000 chr5 180983846 181011727
BTNL8 94 19 130 70 0 0 0.364 0.074 0.504 0.271 0.000 0.000 chr5 180894159 180955906
BTNL9 194 70 50 23 0 0 0.752 0.271 0.194 0.089 0.000 0.000 chr5 181035266 181066521
BTRC 132 37 94 52 0 0 0.512 0.143 0.364 0.202 0.000 0.000 chr10 101349165 101562313
BUB1B 175 59 61 34 0 0 0.678 0.229 0.236 0.132 0.000 0.000 chr15 40156069 40226123
BUB1 90 17 136 70 0 0 0.349 0.066 0.527 0.271 0.000 0.000 chr2 110632528 110683063
BUB3 208 79 38 21 0 0 0.806 0.306 0.147 0.081 0.000 0.000 chr10 123149402 123175467
BUD13 219 81 36 21 0 0 0.849 0.314 0.140 0.081 0.000 0.000 chr11 116743173 116777987
BUD23 186 59 67 43 1 1 0.721 0.229 0.260 0.167 0.004 0.004 chr7 73678597 73703212
BUD31 179 62 69 37 0 0 0.694 0.240 0.267 0.143 0.000 0.000 chr7 99403969 99424616
BVES 115 29 127 67 0 0 0.446 0.112 0.492 0.260 0.000 0.000 chr6 105091822 105142157
BYSL 231 83 26 21 0 0 0.895 0.322 0.101 0.081 0.000 0.000 chr6 41916499 41938046
BZW1 193 62 61 39 0 0 0.748 0.240 0.236 0.151 0.000 0.000 chr2 200806910 200832338
BZW2 208 68 34 24 0 0 0.806 0.264 0.132 0.093 0.000 0.000 chr7 16641181 16711517
C10orf105 215 74 38 27 0 0 0.833 0.287 0.147 0.105 0.000 0.000 chr10 71706701 71724778
C10orf120 222 82 34 21 2 2 0.860 0.318 0.132 0.081 0.008 0.008 chr10 122692709 122704846
C10orf143 196 64 53 33 0 0 0.760 0.248 0.205 0.128 0.000 0.000 chr10 130058896 130115830
C10orf53 212 79 44 25 1 1 0.822 0.306 0.171 0.097 0.004 0.004 chr10 49674651 49702532
C10orf62 215 74 42 31 0 0 0.833 0.287 0.163 0.120 0.000 0.000 chr10 97584721 97595934
C10orf67 162 46 70 42 0 0 0.628 0.178 0.271 0.163 0.000 0.000 chr10 23197696 23349797
C10orf71 211 82 42 20 0 0 0.818 0.318 0.163 0.078 0.000 0.000 chr10 49294170 49332492
C10orf82 232 88 24 15 0 0 0.899 0.341 0.093 0.058 0.000 0.000 chr10 116658696 116674966
C10orf88 200 67 50 34 0 0 0.775 0.260 0.194 0.132 0.000 0.000 chr10 122925901 122959227
C10orf90 108 27 67 39 0 0 0.419 0.105 0.260 0.151 0.000 0.000 chr10 126419997 126675693
C10orf95 225 84 31 19 0 0 0.872 0.326 0.120 0.074 0.000 0.000 chr10 102444837 102456543
C11orf16 204 72 50 30 0 0 0.791 0.279 0.194 0.116 0.000 0.000 chr11 8915076 8937947
C11orf21 212 68 40 31 0 0 0.822 0.264 0.155 0.120 0.000 0.000 chr11 2290628 2306918
C11orf24 199 70 59 35 0 0 0.771 0.271 0.229 0.136 0.000 0.000 chr11 68256338 68276973
C11orf42 219 79 38 25 0 0 0.849 0.306 0.147 0.097 0.000 0.000 chr11 6200557 6216135
C11orf52 177 57 77 45 1 0 0.686 0.221 0.298 0.174 0.004 0.000 chr11 111913913 111931871
C11orf54 181 57 70 42 0 0 0.702 0.221 0.271 0.163 0.000 0.000 chr11 93736672 93769749
C11orf58 191 63 61 38 0 0 0.740 0.244 0.236 0.147 0.000 0.000 chr11 16733647 16763340
C11orf65 164 56 78 41 0 0 0.636 0.217 0.302 0.159 0.000 0.000 chr11 108377755 108472529
C11orf68 202 67 53 35 0 0 0.783 0.260 0.205 0.136 0.000 0.000 chr11 65911810 65924062
C11orf71 210 72 46 31 0 0 0.814 0.279 0.178 0.120 0.000 0.000 chr11 114393532 114405511
C11orf80 123 46 106 45 0 0 0.477 0.178 0.411 0.174 0.000 0.000 chr11 66739769 66848516
C11orf86 165 46 85 51 0 0 0.640 0.178 0.329 0.198 0.000 0.000 chr11 66970304 66982009
C11orf87 194 68 63 36 0 0 0.752 0.264 0.244 0.140 0.000 0.000 chr11 109417190 109434167